BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477942
Length=860
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06390.1 | Symbols: | Uncharacterised protein family (UPF04... 1066 0.0
> AT3G06390.1 | Symbols: | Uncharacterised protein family (UPF0497)
| chr3:1938732-1939779 REVERSE LENGTH=853
Length=853
Score = 1066 bits (577), Expect = 0.0
Identities = 773/860 (90%), Gaps = 44/860 (5%)
Strand=Plus/Plus
Query 1 GCGGCCAAATTCATAACTCACAGTCCAAA--GAA--ACAA-C-AACCCACAAAAGAGTTA 54
|||||||| |||||||||||||||||||| || |||| | || ||||||||||||||
Sbjct 1 GCGGCCAACTTCATAACTCACAGTCCAAACTTAACCACAACCTAATCCACAAAAGAGTTA 60
Query 55 TATAATCATCTGATGGCATCTACCGAGAACCCTGACCCAGAAACTGGCAAATCTGAACCG 114
|| |||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||
Sbjct 61 TAGAATCATCTGATGGCGTCTACTGAGAACCCTGACCCTGAAACTGGCAAATCTGAACCG 120
Query 115 ATTCCCGCATCGGCTACAACACCA-CCTCCCTCAGCCGCTAGTTTCCTAGATTGTCGTAA 173
|||||||| ||||||||| ||||| ||| | |||||||| ||||||||||||||||||||
Sbjct 121 ATTCCCGCGTCGGCTACACCACCACCCT-CATCAGCCGCCAGTTTCCTAGATTGTCGTAA 179
Query 174 AATAGACGTTATAATAAGAGTTCTGCTTTTCTCCGCCACTCTGACTGCTCTTATAGTAAT 233
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AATAGACATTATAACAAGAGTTCTGCTTTTCTCCGCCACTCTGACTGCTCTTATAGTAAT 239
Query 234 GGTGACCAGCGACCAGACCGAGAAGACTCAGCTCCCTGGAGTTTCTTCTCCGGCTCCTGT 293
|||||| ||||||||||| |||| ||||||||||||||||||||| ||||||||||||||
Sbjct 240 GGTGACTAGCGACCAGACAGAGATGACTCAGCTCCCTGGAGTTTCGTCTCCGGCTCCTGT 299
Query 294 CTCCGCCGAGTTCAATGACTCTCCCGCTTTCATATTCTTCGTGGTTGCTCTTGTGGTGA- 352
||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||| |
Sbjct 300 CTCCGCCGAGTTCAATGACTCGCCCGCTTTCATATACTTCGTGGTTGCTCTCGTGGT-AG 358
Query 353 CTAGTTTCTATGCGCTCATGTCAACACTTGTCTCCATCTCTCTACTCTTGAAACCTGAGT 412
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CTAGTTTCTATGCGCTCATATCAACACTTGTCTCCATCTCTCTACTCTTGAAACCTGAGT 418
Query 413 TTACTGCACGGGTCTCCGTTTACCTAGCGTCCTTAGACATGGTGATGCTGGGGATTTTGG 472
| ||||||| | ||||| |||||||||| || ||||||||||||||||||||||||||||
Sbjct 419 TCACTGCACAGTTCTCCATTTACCTAGCCTCGTTAGACATGGTGATGCTGGGGATTTTGG 478
Query 473 CGTCTGCAACGGGAACGGCGGGAGGAGTTGCGTACATAGCGTTGAAAGGAAACAAAGAAG 532
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 479 CGTCTGCAACGGGAACGGCGGGAGGAGTTGCGTACATAGCGTTGAAAGGAAACGAAGAAG 538
Query 533 TTGGGTGGAACAAGATTTGTAATGTCTACGACAAGTTTTGTCGTTACATCGCAACTTCGC 592
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TTGGGTGGAACAAGATCTGTAATGTCTACGACAAGTTTTGTCGTTACATCGCAACTTCGC 598
Query 593 TTGCCTTATCTCTCTTTGCTACACTTCTTCTTCTAGTTTTATCCATTTGCTCAGCTCTCT 652
||||||||||||| |||||| ||||||||||||||||||||||||| || ||||| ||||
Sbjct 599 TTGCCTTATCTCTATTTGCTTCACTTCTTCTTCTAGTTTTATCCATCTGGTCAGCACTCT 658
Query 653 CCAAGAGAACTCCATGAACAAAACAAAAGCTC-TAAATCCATCATCTCTCTGTACCGTGT 711
|||||||||| |||||||||| ||| |||||||||| | || |||||| ||||
Sbjct 659 CCAAGAGAAC---ATGAACAAAA-----GCTTATAAATCCATCCTTTCCCTGTACTGTGT 710
Query 712 ATTTGTTCACACGTGTGTGTATGTCTTTGTGTCTGATTTGATTTGTTTTGTAACTTTTGT 771
|||||||||||||||| | | |||| |||||| | |||||||||||| || |||
Sbjct 711 ATTTGTTCACACGTGT-T-T--GTCT--GTGTCT--T--GATTTGTTTTGT---TTATGT 757
Query 772 TATGTTATATTTAATGTAAGCATGCGTTTCTA-ATTAC-G-ACGTATAGTTGAATTCGTG 828
||| ||| || ||| ||||||||||||||| || || | ||| | ||||| |||||||
Sbjct 758 TATATTA-ATGTAA---AAGCATGCGTTTCTATAT-ACAGTACG-A-AGTTGCATTCGTG 810
Query 829 TATCTCTTG-C-CGTAATAT 846
||||||||| | ||||||||
Sbjct 811 TATCTCTTGTCGCGTAATAT 830
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41945512745
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5