BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477944
Length=1851
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06410.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type fam... 2608 0.0
AT5G18550.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type fam... 811 0.0
> AT3G06410.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family
protein | chr3:1947240-1949789 REVERSE LENGTH=1881
Length=1881
Score = 2608 bits (1412), Expect = 0.0
Identities = 1755/1905 (92%), Gaps = 86/1905 (5%)
Strand=Plus/Plus
Query 2 tttt-ttttAGTTCAAAAAAG-TTTCAGCTTTGAAGGCagagagagagagagagagaTCA 59
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 8 TTTTATTTTAGTTCAAAAAAGTTTTCAGCTTTGAAGGCAGAGAGAGAGAGAGAGAGATCA 67
Query 60 AGCGAC---TGAGAGTGGTGTTGAAGCGAAACTACGAtcttc-ttttt-cttttcttctt 114
|||||| ||||||||||||||||||||||||||||||||| ||||| |||||| ||
Sbjct 68 AGCGACTAGTGAGAGTGGTGTTGAAGCGAAACTACGATCTTCTTTTTTCCTTTTCAGATT 127
Query 115 tctcagattttcacaacactcttctttGATCGGAGCTCTAACATTCCGACAAAAGCT--- 171
| ||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 128 T-TCACA--ATCACAACACTCTTCTTTGATCGGAGCTCTAACATTCCGACAAAAGCTCAA 184
Query 172 ------------AAAAGACTTC-CTCTTTAGCTGGTTTGAGGGATTTGTCTCCCTCTGTA 218
|||||||||| ||||| ||| |||||||||||||||||||||||||
Sbjct 185 AAAAAAAAAAAAAAAAGACTTCTTTCTTTTGCTCTTTTGAGGGATTTGTCTCCCTCTGTA 244
Query 219 GAGATTAGGGTCTATCAATGGAGCGGTACGGTCGCGCCGGTGAAGAAGGGTCGCGATCGG 278
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 245 GAGATTAGGGTCTATCAATGGAGCGGTACGGTCGCCCCGGTGAAGAAGGGTCGCGATCGG 304
Query 279 ATCCATCTCTTGAATGGACCTCTCATGGAGGTGAAACCGGACTCGAAGCTTCGATGTGGC 338
|||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||
Sbjct 305 ATCCATCTCTTGAATGGACCTCTCATGGTGGTGAAACCGCTGTCGAAGCTCCGATGTGGC 364
Query 339 GGTTAGGGTTGA---GCGGCGGC---------GGA---GGAGAATCGTACCCGGAGCGAC 383
|||||||||||| |||||||| ||| |||||||||||||||||| |||
Sbjct 365 GGTTAGGGTTGAGCGGCGGCGGCGGAGGTGGAGGAGGTGGAGAATCGTACCCGGAGAGAC 424
Query 384 CCGACGAGCCTGATTGTATTTATTACTTGAGAACCGGCGTTTGCGGGTACGGGTCAAGAT 443
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 CTGACGAGCCTGATTGTATTTATTACTTGAGAACCGGCGTTTGCGGGTACGGGTCAAGAT 484
Query 444 GTCGGTTTAATCACCCACGAGATCGTGGAGCGGTTATTGGAGGTGTGAGAGGAGAAGCTG 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 GTCGGTTTAATCACCCACGAGATCGTGGAGCGGTTATTGGAGGTGTGAGAGGAGAAGCTG 544
Query 504 GAGCTTTACCGGAGAGGATGGGACATCCGGTTTGTCAGCATTTTATGCGGACGGGAACGT 563
||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||
Sbjct 545 GAGCTTTACCGGAGAGGATGGGACATCCGGTTTGTCAGCATTTTATGCGAACTGGTACGT 604
Query 564 GTAAATTTGGCGCTTCTTGCAAGTATCATCATCCTAGGCAAGGAGGTGGTGGTGGTTCCG 623
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 GTAAATTCGGTGCTTCTTGCAAGTATCATCATCCTAGGCAAGGAGGTGGTGGTGGTTCCG 664
Query 624 TTGCGCCTGTCTCGCTTAGTTATTTGGGATATCCATTACGCCCGGGAGAGAAAGAGTGCT 683
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 TTGCGCCTGTCTCGCTAAGTTATTTGGGATATCCATTACGCCCGGGAGAGAAAGAGTGCT 724
Query 684 CTTATTACTTGAGAACCGGTCAGTGTAAATTTGGTTTGACTTGTAGATTCAACCATCCCG 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 CTTATTACTTGAGAACCGGTCAGTGTAAATTTGGTTTGACTTGTAGATTCAACCATCCCG 784
Query 744 TGCCACTCGCTGTACAGGGTCCACCTCAGCATCAGC-A-A-CAGCA---ACAG-C-CA-- 793
||||||||||||||||||||||||||||||| | || | | ||||| |||| | ||
Sbjct 785 TGCCACTCGCTGTACAGGGTCCACCTCAGCAGCCGCAACAGCAGCAGCCACAGCCACAGC 844
Query 794 --CAGCTACAGACTATTTATCCGACACTTCAGTCTCAATCCGTTCCTTCCTCTCAACAAT 851
||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||
Sbjct 845 CGCAGCTACAGACTATTTATCCGACACTTCAATCTCAATCTATTCCTTCGTCTCAACAAT 904
Query 852 ATGGGTTAGTTTTGACAAGGCCATCTCTTTTACCTGGTTCATATCTTCCAAGCCCTTACG 911
|||||||||||||||| ||||| ||| ||||| ||||||||||||||| |||||||||||
Sbjct 905 ATGGGTTAGTTTTGACTAGGCCTTCTTTTTTAACTGGTTCATATCTTCAAAGCCCTTACG 964
Query 912 GTCCTCCAATGGTTCTGCCTCCGGGAATGGTTCCATACTCTGGTTGGAATCCTTACCAGG 971
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 965 GTCCTCCAATGGTTCTGCCTCCTGGAATGGTTCCATACTCTGGTTGGAATCCTTACCAGG 1024
Query 972 CTTCTTTAAGTGCAATGCCTTCGCCTGGAACTCAACCGTCTATTGGATCAAGCTCTGTTT 1031
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1025 CTTCTTTAAGTGCAATGCCTTCGCCTGGAACTCAACCGTCTATTGGATCAAGCTCTATTT 1084
Query 1032 ATGGAATCACGCCGTTATCTCCTTCAGTGACTGCATATACAGGAACATATCAATCAG-GC 1090
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| | ||
Sbjct 1085 ATGGACTCACGCCGTTATCTCCTTCAGCGACTGCATATACAGGAACATATCAATCTGTGC 1144
Query 1091 CCGTCTTCAAAT---ACCTCAAAAGAGTTTCCTCAGCGACCTGATCAACCCGAGTGTCAA 1147
| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1145 CT-TCTTCAAATTCCACCTCAAAAGAGTTTCCTCAGCGACCTGATCAACCCGAGTGTCAA 1203
Query 1148 TACTTCATGAGAACCGGTGACTGTAAATTCGGATCCTCTTGCCGATACCATCATCCTGTA 1207
|||||||||||||| |||||||||||||||||||| || || ||||||||||||||||||
Sbjct 1204 TACTTCATGAGAACTGGTGACTGTAAATTCGGATCTTCGTGTCGATACCATCATCCTGTA 1263
Query 1208 GATGCAGTTCCACCTAAGACTGGCCTTGTCCTCAGCTCCATTGGCCTTCCACTTCGTCCC 1267
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1264 GATGCAGTTCCACCTAAGACTGGCATTGTCCTCAGCTCCATTGGCCTTCCACTTCGTCCC 1323
Query 1268 GGAGTAGCGCAATGCACTCACTTTTCTCAACACGGAATCTGCAAGTTTGGACCAGCGTGT 1327
|| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 1324 GGCGTAGCGCAATGCACTCACTTTGCTCAACACGGAATCTGCAAGTTTGGACCGGCGTGT 1383
Query 1328 AGGTTTGATCACTCAATGAGTTCTTCGCTTAGCTACAGTCCGTCTGCATCATCACTAACC 1387
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1384 AAGTTTGATCACTCAATGAGTTCTTCGCTTAGCTACAGTCCGTCTGCATCATCACTAACT 1443
Query 1388 GATATGCCCGTGGCTCCATACCCAATCGGATCATCCTCACTCAGCGGCTCATCAGCTCCA 1447
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1444 GATATGCCCGTGGCGCCATACCCAATCGGATCATCCTCACTCAGCGGCTCATCAGCTCCA 1503
Query 1448 GTAAGCTCAAGCAATGAACCCACCACAGAGGCTGTGACTGCTGCTGCAGTTTCCACTTCT 1507
|||||||| |||||||||||||||| ||||||||||||| | |||||||||| ||||
Sbjct 1504 GTAAGCTCTAGCAATGAACCCACCAAAGAGGCTGTGACT-C--CTGCAGTTTC---TTCT 1557
Query 1508 ATGGTCAGTGGCTTGAGCCGTCCAGAGCCAGCTGAGACGAGTGGTGACTCGGCCAGCGTC 1567
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1558 ATGGTCAGTGGCTTGAGCCGTCCTGAGCCAGCTGAGACGAGTGGTGACTCAGCCAGCGTC 1617
Query 1568 AGTGGCAGCATAGAAGCTACGACTTCAAGTTaaaaaaaaaaaaaaaaGAGAGAGGAAAAT 1627
||||||||||||||||||| ||||||||||||||||||||||| ||||| | |||||
Sbjct 1618 AGTGGCAGCATAGAAGCTAAGACTTCAAGTTAAAAAAAAAAAA----GAGAG-G-AAAAT 1671
Query 1628 ACCCTCAATTCTTCGTAAACTAAGCAACATTAAGTaaaaagaaaaaagagaaaagaagaT 1687
| ||||||||||| | ||||||||||||||||| ||||| || |||||||||||||
Sbjct 1672 ATTCTCAATTCTTCATGAACTAAGCAACATTAAG-AAAAA-AA----GAGAAAAGAAGAT 1725
Query 1688 TATTTTTGGGGTCTGAGATTCGATGGAAGCAGAGAGACCAAAGCTTCTGTCATTGACCAT 1747
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1726 TATTTTTGGGGTCTGAGATTTGATGGAAGCAGAGAGACTAAAGCTTCTGTCATTGACCAT 1785
Query 1748 TTGTCCATAGATAATATATtctctcatacggccatctctctatctctctccctcttctTT 1807
||||||||| |||||||||||||||||||||||||||||| |||||| | || |
Sbjct 1786 TTGTCCATATATAATATATTCTCTCATACGGCCATCTCTC---CTCTCT---TGTT-T-- 1836
Query 1808 ATTTTTCTTGAATAACGA-TTACTAATAAATGGCCTTATTCAAGC 1851
|||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1837 ATTTTTCTTGAATAACGAATTACTAATAAATGGCCTTATTCAAGC 1881
> AT5G18550.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family
protein | chr5:6160178-6163130 FORWARD LENGTH=2136
Length=2136
Score = 811 bits (439), Expect = 0.0
Identities = 962/1209 (80%), Gaps = 57/1209 (5%)
Strand=Plus/Plus
Query 235 AATGGAGCGGTACGGTCGCGCCGGTGAAGAAGGGTCGCGATCGGATCCATCTCTTGAATG 294
|||||| ||||||||| ||||||| ||||| | ||| || ||||||||||| | ||||||
Sbjct 337 AATGGAACGGTACGGTGGCGCCGGAGAAGATGAGTCACGGTCGGATCCATCACATGAATG 396
Query 295 GACCTCTCATGGAGGTGAAACCGG-ACTCGAAGCTTCGATGTGGCGGTTAGGGTTGAGCG 353
| || |||| ||| ||||| || | ||||||||||||||||||||||||||||| | |
Sbjct 397 GTCCGCTCAAGGAACCGAAACTGGTA-TCGAAGCTTCGATGTGGCGGTTAGGGTTGCGAG 455
Query 354 GCGGCGGAGG---AG---AATCGTACCCGGAGCGACCCGACGAGCCTGATTGTATTTATT 407
| || ||||| || || ||| ||||||||||||||| || || |||||||| ||||
Sbjct 456 GTGGTGGAGGTGGAGGTGAAACGTTCCCGGAGCGACCCGATGAACCCGATTGTATCTATT 515
Query 408 ACTTGA-GAACCGGCGTTTGCGGGTACGGGTCAAGATGTCGGTTTAATCACCCACGAGAT 466
| || | ||||||| ||||||||||||||||| |||||||||| |||||||||||| |
Sbjct 516 ATTT-ACGAACCGGTGTTTGCGGGTACGGGTCTCGATGTCGGTTCAATCACCCACGAAAC 574
Query 467 CGTGGAGCGGTTATTGG-AGGTGTGAGAGGAGAAGCTGGAGCTTTACCGGAGAGGATGGG 525
|||| |||| |||| |||| | ||| ||||||||||| || || ||||| |||||
Sbjct 575 CGTGCTCCGGTC-TTGGGAGGTCTCAGAACAGAAGCTGGAGAGTTCCCTGAGAGAATGGG 633
Query 526 ACATCCGGTTTGTCAGCATTTTATGCGGACGGGAACGTGTAAATTTGGCGCTTCTTGCAA 585
||| || |||||||||||||| ||||| || ||||| ||||||||||| |||||||| ||
Sbjct 634 ACAACCTGTTTGTCAGCATTTCATGCGAACAGGAACATGTAAATTTGGTGCTTCTTGTAA 693
Query 586 GTATCATCATCCTAGGCAAGGAGGTGGTGGTGGTTCCGTTGCGCCTGTCTCGCTTAGTTA 645
|||||| |||||||| |||||||| || || | ||| ||| | |||||||| || | |||
Sbjct 694 GTATCACCATCCTAGACAAGGAGGAGGAGGAGATTCTGTTACTCCTGTCTCCCTAAATTA 753
Query 646 TTTGGGATATCC-ATTACGCCCGGGAGAGAAAGAGTGCTCTTATTACTTGAGAACCGGTC 704
|||||| ||| |||||||||||| |||||||| ||||| |||| | ||||||||||||
Sbjct 754 CATGGGAT-TCCCATTACGCCCGGGGGAGAAAGAATGCTCCTATTTCATGAGAACCGGTC 812
Query 705 AGTGTAAATTTGGTTTGACTTGTAGAT-TCAACCATCCCGTGCCAC-TCGCTGTACAGGG 762
|||||||||| |||| || ||| ||| ||| |||||| || || | | | |||||| |
Sbjct 813 AGTGTAAATTCGGTTCCACCTGTCGATATCA-CCATCCAGTCCCTCCTGG-TGTACAAGC 870
Query 763 TCCACCTCAGCATCAGCAACAGCAAC-AGCCACAGCTACAGACTATTTATCCGA-CACTT 820
|||| ||||||| |||||||| || | || | | | || ||||| ||||| | | |||
Sbjct 871 TCCATCTCAGCAGCAGCAACAACAGTTATCCGCTGGTCCA-ACTATGTATCC-ATCGCTT 928
Query 821 CAGTCTCAATCCGTTCCTTCCTCTCAACAATATGG-GTTAGTTTT-GACAAGGCCATCT- 877
||||||||| |||||||||| || || ||||| || || |||| | | |||| || ||
Sbjct 929 CAGTCTCAAACCGTTCCTTCATCGCAGCAATACGGAGT-AGTTCTAG-CAAGACC-TCAG 985
Query 878 CTTTTACCTGGTTCATATCTTCCAAGCCCTTACGGTC-C--TCCAATGGTTCTGCCTCCG 934
|| ||||| || |||||| ||| ||||||||| ||| | || ||||||||| |||||
Sbjct 986 CTCTTACCAGGCTCATATGTTCAAAGCCCTTATGGTTACGGTCAAATGGTTCTTCCTCCT 1045
Query 935 GGAATGGTTCCATACTCTGGTTGGAATCCTTACCAGGCTTCTTTAAGTGCAATGCCTTCG 994
|| |||||||||||||| || ||||| ||||||||||||||| ||||||| ||||||||
Sbjct 1046 GGTATGGTTCCATACTCGGGCTGGAACCCTTACCAGGCTTCTGTAAGTGCGATGCCTTCC 1105
Query 995 CCTGGAACTCAACCGTCTATTGGATCAAGCTCTGTTTATGGAATCACGCCGTTATCTCCT 1054
||||| ||||||||||| || ||| | |||||||||||||||||||| |||||||||||
Sbjct 1106 CCTGGGACTCAACCGTCAATGGGAACCAGCTCTGTTTATGGAATCACTCCGTTATCTCCC 1165
Query 1055 TCAGTGACTGCATAT-A--CAGGAACATAT-CAATCAGGCCCGTCTTCAAATACCTCAA- 1109
|||| | |||| ||| | | || ||| | | | | || || |||||||| ||
Sbjct 1166 TCAGCGCCTGCTTATCAATCCGGTCCATCTTCTACC-GGT--GT-TTCAAATAAGG-AAC 1220
Query 1110 AAGAGTTT-CCTCAGCGACCTGATCAACCCGAGTGTCAATACTTCATGAGAACCGGTGAC 1168
|| | ||| |||||||||||||| ||||| |||||||||||||| ||||||||||| ||
Sbjct 1221 AA-ACTTTTCCTCAGCGACCTGAACAACCTGAGTGTCAATACTTTATGAGAACCGGAGAT 1279
Query 1169 TGTAAATTCGGATCCTCTTGCCGATACCATCATCCTGTAGATGCAGT-TCCACCTAAGAC 1227
|||||||||||| |||||||| ||| |||||||||| | || |||| || || | ||
Sbjct 1280 TGTAAATTCGGAACCTCTTGCAGATTCCATCATCCTATGGAAGCAGCATCG-CC-A-GA- 1335
Query 1228 TGGCCTTGT-CC-TCAGCTC-CATTGGCCTTCCACTTCGTCCCGGAGTAGCGCAATGCAC 1284
||| || || ||||| | ||||||||| |||||||||||||| | || || ||||||
Sbjct 1336 -GGCAA-GTACCCTCAGC-CACATTGGCCTCCCACTTCGTCCCGGCGCAGTGCCATGCAC 1392
Query 1285 TCACTTTTCTCAACACGGAATCTGCAAGTTTGGACCAGCGTGTAGGTTTGATCACTCAAT 1344
||||||| | |||||||| || ||||||||||| || || || | ||||| ||||| |
Sbjct 1393 TCACTTTGCGCAACACGGTATTTGCAAGTTTGGGCCTGCCTGCAAATTTGACCACTCCTT 1452
Query 1345 GAG-T-T-CTTCGCTTAGCTACAGTCCGTCTGCATCATCACTAACCGATATGCCCGTGGC 1401
| | | | |||| || |||||||| || || | || ||||| || || |||||||| ||
Sbjct 1453 GGGCTCTTCTTCACTAAGCTACAGCCCATCCCCTTCTTCACTCACGGACATGCCCGTCGC 1512
Query 1402 TCCATACCC 1410
|| |||||
Sbjct 1513 ACCTTACCC 1521
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91615994625
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5