BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477945
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06420.1 | Symbols: ATG8H | Ubiquitin-like superfamily prote... 939 0.0
> AT3G06420.1 | Symbols: ATG8H | Ubiquitin-like superfamily protein
| chr3:1954990-1956397 REVERSE LENGTH=712
Length=712
Score = 939 bits (508), Expect = 0.0
Identities = 654/717 (91%), Gaps = 40/717 (6%)
Strand=Plus/Plus
Query 1 GTTTCTTCTCGaacaaacaaaaacgaaccaaccaaacaaaaaattgaacaca------tc 54
|||||||||||||||| ||||||||||| ||||||||| ||||||||||||| ||
Sbjct 1 GTTTCTTCTCGAACAATCAAAAACGAACTAACCAAACATAAAATTGAACACATCCTCTTC 60
Query 55 ctctgctctctgcaaacaaacaaaa-aac-a--C---C--G----ATTCGGTCG-GAAAT 100
|||||||||||||||||||| |||| | | | | | | |||| |||| |||||
Sbjct 61 CTCTGCTCTCTGCAAACAAA-AAAACACCGATTCGGTCAGGAATCATTC-GTCGTGAAAT 118
Query 101 CTGTAATGGGTATCGTTGTGAAGTCTTTCAAGGATCAATTCTCCTCTGATGA-ACGATTG 159
|||||||||| || ||||| |||||||||||||||||||||||||||||||| | |||||
Sbjct 119 CTGTAATGGGGATTGTTGTCAAGTCTTTCAAGGATCAATTCTCCTCTGATGAGA-GATTG 177
Query 160 AAGGAGTC-AACGAACATCATTGCCAAATATCCAGATAGAGTTCCTGTGATCATTGAGAA 218
|||||||| ||| ||||||||||| ||||||||||||||| | |||||||||||||||||
Sbjct 178 AAGGAGTCGAAC-AACATCATTGCGAAATATCCAGATAGAATACCTGTGATCATTGAGAA 236
Query 219 ATATTCAAACGCAGATCTGCCAGACATGGAGAAGAACAAATACTTGGTCCCACGAGACAT 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 ATATTCAAACGCAGATCTGCCAGACATGGAGAAGAACAAATACTTGGTCCCACGAGACAT 296
Query 279 GACTGTTGGACATTTCATTCATATGCTAAGCAAAAGGATGCAGTTAGATCCATCCAAAGC 338
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GACTGTTGGACATTTCATCCATATGCTAAGCAAAAGGATGCAGTTAGATCCATCCAAAGC 356
Query 339 TCTCTTTGTTTTTGTACATAACACACTTCCTCAAACCGCTAGTCGCATGGACTCTCTCTA 398
|||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 357 TCTCTTTGTTTTCGTACACAACACTCTTCCTCAAACCGCTAGTCGCATGGACTCTCTCTA 416
Query 399 CAATACTTTCAAAGAAGAAGATGGGTTCTTGTACATGTGCTACAGCACCGAGAAAACTTT 458
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 417 CAATACTTTCAAGGAAGAAGACGGGTTCTTGTACATGTGCTACAGCACCGAGAAAACTTT 476
Query 459 TGGCTAACCAAAGATTTGTCGCTTCATATCTGA--TCGAAGCGCACTCTGAATAATCCAT 516
||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 477 CGGCTAACAAAAGATTTGTCGCTTCATATC-GAAATCGAAGCGCACTCTGAATAATCCAT 535
Query 517 TTGTTTGATTCTTATGTTTGTGAATAACGTCAGCTCTTGTTGTT---GTTATTGTTATTG 573
||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 536 TTGTTTGATTCCTATGTTTGTGAATAACGTCAGCTCTTGTTGTTACTGTTATTGTTGTTG 595
Query 574 TTAGCTGACATTGTACAGAAAAGCTaaaaaaaa-aaa-aCATTTGACTTTGTAAATTATT 631
||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 596 TTAGCTGACATTGTACAGAAAAGCTAAAAAAAAGAAAGACATTTGACTTTGTAAATTATG 655
Query 632 TATAACTCAAA-TATGGCAATAATAA---GAC-AGGTGATGATGATTCACACGAAAC 683
||||| || || |||||||||||||| ||| | ||||||||||||||||||||||
Sbjct 656 TATAA-TCCAACTATGGCAATAATAATAAGACCAAGTGATGATGATTCACACGAAAC 711
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33054068726
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5