BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477947
Length=2094
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06440.1 | Symbols: | Galactosyltransferase family protein ... 2488 0.0
AT3G06433.1 | Symbols: | pseudogene of nodulin MtN3 family pro... 100 5e-20
> AT3G06440.1 | Symbols: | Galactosyltransferase family protein
| chr3:1972622-1975754 REVERSE LENGTH=2282
Length=2282
Score = 2488 bits (1347), Expect = 0.0
Identities = 1488/1557 (96%), Gaps = 5/1557 (0%)
Strand=Plus/Plus
Query 302 CTACTTTGGCCATGAAAGATTTGGTTTTTCTGATCAATAAAGAGAAAG-GAGCTTCTTCT 360
|||| ||||| ||||||| ||||||||| ||||||| |||| ||| |||||| ||||
Sbjct 484 CTACATTGGCAATGAAAGGTTTGGTTTTAGAAATCAATAGAGAG-AAGAGAGCTTATTCT 542
Query 361 TCTGCTATGGTCTCCAAGGAACTTGGAATAAACTGTCCGGATTTTGTCACTGCATTTGAT 420
|||| ||||||||| |||||| || ||| || ||||||||||||||||||||||||||||
Sbjct 543 TCTGGTATGGTCTCTAAGGAAATTAGAAGAATCTGTCCGGATTTTGTCACTGCATTTGAT 602
Query 421 GAGGATTTGTCTGGTTTAAGGCATGTACTACTTGAGCTTCCTTGTGGTTTAATTGAAGAT 480
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 603 AAGGATTTGTCTGGTTTAAGTCATGTACTTCTTGAGCTTCCTTGTGGTTTAATTGAAGAT 662
Query 481 TCTTCAGTAACTTTGGTTGGTATTCCTGATGAACATTCTAGTAGCTTCCAGATTCAGCTC 540
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 TCTTCAATAACTTTGGTTGGTATTCCTGATGAACATTCTAGTAGCTTCCAGATTCAGCTC 722
Query 541 GTTGGCTCGGGATTATCAGGCGAAACCCGTCGGCCAATAATCTTGCGTTACAATGTGAAT 600
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 723 GTTGGCTCGGGATTATCAGGAGAAACTCGTCGGCCAATAATCTTGCGTTACAATGTGAAC 782
Query 601 TTTTCTAGGCCATCCATAGTGCAAAATACATGGACAGAAAAGCTCGGTTGGGGAAACGAA 660
||||||| ||||| ||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 783 TTTTCTAAACCATCGATAGTGCAAAATACATGGACAGAGAAGCTAGGTTGGGGAAACGAA 842
Query 661 GTGCGATGCCCAGATCATGGATCAGTT-AAAAATCATTTAGTTGATCAACTTCCTCTCTG 719
| |||||||| | ||||||||||| || |||||||||||||||||| |||||||||||||
Sbjct 843 GAGCGATGCCAATATCATGGATCA-TTGAAAAATCATTTAGTTGATGAACTTCCTCTCTG 901
Query 720 CAACAAACAGACCGGTAGAATCACTTCGGAAAAGAGTTCCAACGATGATGCAACTATGGA 779
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 902 CAACAAACAGACCGGTAGAATCATTTCGGAAAAGAGTTCCAACGATGATGCAACTATGGA 961
Query 780 ATTTTCTCTTTCAAATGCTAATTTTCCAGTTCTCAAAGGGAGTCCTTTCACTGCCACATT 839
| |||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||
Sbjct 962 ACTTTCTCTTTCAAATGCTAATTTTCCATTTCTCAAAGGGAGTCCCTTCACTGCCGCATT 1021
Query 840 GTGGTTTGGCTTAGAAGGTTTTCATATGACGATAAATGGGCGGCACGAGACTTCATTTGC 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 GTGGTTTGGCTTAGAAGGTTTTCATATGACGATAAATGGGCGGCACGAGACTTCATTTGC 1081
Query 900 TTACAGGGAGAAGCTCGAGCCATGGTTAGTCAGTGCAGTCAAAGTCTCAGGTGGTTTGAA 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1082 TTACAGGGAGAAGCTCGAGCCATGGTTAGTCAGTGCAGTCAAAGTCTCAGGTGGTTTGAA 1141
Query 960 AATGTTATCTGTCTTAGCCACAAGACTGCCCATTCCCGATCACCATGCTTCTTTAATCAT 1019
||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 1142 AATTTTATCTGTCTTAGCCACAAGACTGCCCATTCCCGATGACCATGCATCTTTAATCAT 1201
Query 1020 AGAAGAGAAACTTAAAGCTCCATCTCTTTCCGGGACAAGAATAGAACTATTGGTGGGTGT 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1202 AGAAGAGAAACTTAAAGCTCCATCTCTTTCCGGGACAAGAATAGAACTATTGGTGGGTGT 1261
Query 1080 TTTCTCCACTGGAAATAATTTTAAACGGCGTATGGCATTGAGAAGATCTTGGATGCAATA 1139
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1262 TTTCTCCACTGGAAATAATTTTAAGCGGCGTATGGCATTGAGAAGATCTTGGATGCAATA 1321
Query 1140 CGAGGCAGTAAGATCTGGCAAAGTGGCTGTTCGATTTCTCATTGGCCTTCACACGAAGGA 1199
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 1322 CGAGGCAGTAAGATCTGGCAAAGTAGCTGTTCGATTTCTCATTGGCCTTCACACAAATGA 1381
Query 1200 AAAAGTCAATTTAGAGATGTGGCGAGAATCTAAGGCATATGGAGACATTCAGTTTATGCC 1259
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1382 AAAAGTCAATTTAGAGATGTGGAGAGAATCTAAGGCATATGGAGACATTCAGTTTATGCC 1441
Query 1260 ATTTGTTGATTACTATGGTTTACTTAGCTTGAAAACAGTTGCGCTTTGCATTCTCGGGAC 1319
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1442 ATTTGTTGACTACTATGGTTTACTTAGCTTGAAAACAGTTGCGCTTTGCATTCTCGGGAC 1501
Query 1320 CAAAGTCATCCCAGCAAAATACATAATGAAGACGGATGATGATGCGTTTGTGCGGATTGA 1379
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1502 CAAAGTCATCCCAGCAAAATACATAATGAAGACGGATGATGATGCGTTTGTACGGATTGA 1561
Query 1380 TGAACTCCTATCAAGTCTAAAAGAAAAACCGTCTAGTGCCCTTTTGTACGGTTTGATATC 1439
||| ||||||||||||||| |||||| |||||||||||||||| ||||||||||||| ||
Sbjct 1562 TGAGCTCCTATCAAGTCTAGAAGAAAGACCGTCTAGTGCCCTTCTGTACGGTTTGATCTC 1621
Query 1440 ATTTGATTCATCACCGGACCGTGAACAAGGCAGCAAATGGTTTATCCGTAAAGAGGAATG 1499
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1622 ATTTGATTCATCACCGGACCGTGAACAAGGCAGCAAATGGTTTATCCCTAAAGAGGAATG 1681
Query 1500 GCCTTTAGATTCATACCCTCCATGGGCACATGGCCCTGGCTATATCATCTCTCATGATAT 1559
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1682 GCCTTTAGATTCATACCCTCCATGGGCACATGGCCCTGGCTACATCATCTCTCATGATAT 1741
Query 1560 CGCGAAATTTGTGGTGAAGGGTCACCGTCAAAGAGATCTTAGACTTTTCAAGCTGGAAGA 1619
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1742 AGCGAAATTTGTGGTGAAGGGTCACCGTCAAAGAGATCTTGGACTTTTCAAGCTGGAAGA 1801
Query 1620 TGTGGCGATGGGGACATGGATTCAACAATTCAACGAGACAATAAAAAGAGTTAAGTACAT 1679
|||||||||||||| ||||||||||||||||||| |||| ||||||||||| ||||||||
Sbjct 1802 TGTGGCGATGGGGATATGGATTCAACAATTCAACCAGACGATAAAAAGAGTGAAGTACAT 1861
Query 1680 CAATGACAAAAGATTTCATAACAGTGGTTGTAAATCAAATTACATTCTTGTTCATTACCA 1739
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1862 CAATGACAAAAGATTTCATAACAGTGATTGTAAATCAAATTACATTCTTGTTCATTACCA 1921
Query 1740 AACTCCTCGACTAATTTTGTGTCTTTGGGAGAAGCTGCAAAAAGAGAACCAATCTATTTG 1799
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1922 AACTCCTAGACTAATTTTGTGTCTTTGGGAGAAGCTGCAAAAAGAGAACCAATCTATTTG 1981
Query 1800 CTGCGAATAAATCTCTCGAGCATGCAAGTATGTAACCTTTCTGGTTCTGTTTCTACA 1856
|||||||||||||||||||||||| | ||||||||| |||||||||||||||| |||
Sbjct 1982 CTGCGAATAAATCTCTCGAGCATGTACGTATGTAACTTTTCTGGTTCTGTTTC-ACA 2037
Score = 390 bits (211), Expect = 2e-107
Identities = 274/302 (91%), Gaps = 14/302 (5%)
Strand=Plus/Plus
Query 1 ATGATGCAATTCATGTCAGTGGTGAGGTTTAAATTTGGTTTCACTTCAGTCAGAATGAGG 60
|||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 132 ATGAAGCAATTCATGTCAGTGGTGAGATTCAAATTTGGTTTCACTTCAGTCAGAATGAGG 191
Query 61 GATTGGTCGGTGGGAGTCTCCATTATGGTTCTCACATTGATCTTCATCATCCGTTATGAA 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 192 GATTGGTCGGTGGGAGTCTCCATTATGGTTCTTACATTGATCTTCATCATCCGTTATGAA 251
Query 121 CAATCTGATCACAAATTTCCAACGAATTACACTGTGGATGATTCTAGTATAGAAGGAGAG 180
||||||||||||| | | | | | | ||||||||||||||||||||||||||||
Sbjct 252 CAATCTGATCACAC-T--C-A-C-A----C--TGTGGATGATTCTAGTATAGAAGGAGAG 299
Query 181 AGTGTTCATGAACCAGCAAAGAAGCCACATTTTATAACTTTGGAGGATCTTGATTATCTA 240
|||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 300 AGTGTTCATGAACCCGCAAAGAAGCCACATTTTATGACTTTGGAAGATCTTGATTATCTA 359
Query 241 TTTTCAAACAAAAGCTTTTTCGGAGAAGAAGAAGATTTGAAA-GGATTGCTTGTATGGTC 299
||||||||||| |||||||| ||||||||||||| | | || ||| |||||||||||||
Sbjct 360 TTTTCAAACAAGAGCTTTTTTGGAGAAGAAGAAG-TGTCCAATGGAATGCTTGTATGGTC 418
Query 300 TC 301
||
Sbjct 419 TC 420
Score = 104 bits (56), Expect = 4e-21
Identities = 70/76 (92%), Gaps = 4/76 (5%)
Strand=Plus/Plus
Query 2019 ATTCATTGTCCATTGACGTAACCGTTGTTGCTTTTGTTGTATCGGGGCACACTTTTCCGG 2078
||||||||||| | ||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 2201 ATTCATTGTCC--T--CGTAAACGTTGTTGCTTTTGTTGTATCGGGGCACACTTATCCGG 2256
Query 2079 ATTTATCGATTATGCA 2094
||||||||||||||||
Sbjct 2257 ATTTATCGATTATGCA 2272
> AT3G06433.1 | Symbols: | pseudogene of nodulin MtN3 family protein
| chr3:1958901-1962344 FORWARD LENGTH=3444
Length=3444
Score = 100 bits (54), Expect = 5e-20
Identities = 58/60 (97%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 2035 CGTAACCGTTGTTGCTTTTGTTGTATCGGGGCACACTTTTCCGGATTTATCGATTATGCA 2094
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1509 CGTAAACGTTGTTGCTTTTGTTGTATCGGGGCACACTTATCCGGATTTATCGATTATGCA 1568
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103814727060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5