BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477950
Length=2442
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06450.1 | Symbols: | HCO3- transporter family | chr3:19759... 3882 0.0
> AT3G06450.1 | Symbols: | HCO3- transporter family | chr3:1975959-1980036
REVERSE LENGTH=2595
Length=2595
Score = 3882 bits (2102), Expect = 0.0
Identities = 2341/2456 (95%), Gaps = 17/2456 (1%)
Strand=Plus/Plus
Query 3 GCAGCAGTTTTTAACTGATAAAAAATCTCCCACAGCTCTT-T-T----A-TAGAGAGGTC 55
|||| |||||||||||||||||||||||||||| |||||| | | | ||||||||||
Sbjct 100 GCAGTAGTTTTTAACTGATAAAAAATCTCCCACGGCTCTTGTATAGAGACTAGAGAGGTC 159
Query 56 AAGCCTAGAAAACGAAAGCTCTTTTCTCTCAGTCTTATTAAGTTGTCTTCTTTTGGTCAT 115
|||||||||||||||||||| ||||||||||||||| | ||||||| ||| ||| |||||
Sbjct 160 AAGCCTAGAAAACGAAAGCTATTTTCTCTCAGTCTTCTAAAGTTGTGTTCCTTTAGTCAT 219
Query 116 TTTGAGCTGATTTGTCTCTGTACATTGAAAACTTGAACACACCAAATCTACATGGACAAA 175
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||
Sbjct 220 TTTGAGCTGATTTGTCTCTGGACACTGAAAACTTGAACACACCAAATCTACATGGACGAA 279
Query 176 GCAGAAAGCTTTGTCCCGTTTCAGGGCATAAAGAAAGATGTCAAAGGGAGACTCAAATGC 235
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 280 GCAGAGAGCTTTGTCCCGTTTCAGGGTATAAAGAAAGATGTCAAAGGGAGACTCAACTGC 339
Query 236 TACAAGCAAGATTGGATCAGTGGTCTCAGAGCTGGATTTAGGATTCTGGCACCAACAACT 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 340 TACAAGCAAGATTGGATCAGTGGTCTCAGAGCTGGATTTAGGATTCTGGCACCAACAACT 399
Query 296 TACATATTCTTTGCATCCGCTATTCCGGTGATTACTTTTGGAGAACAGTTGGAAAGAGAT 355
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 400 TACATATTCTTTGCATCCGCTATTCCGGTGATTACATTTGGAGAACAGTTGGAAAGAGAT 459
Query 356 ACTGGTGGGAAGATTACGGCTGTTCAAACCTTAGTTTCGACAGCATTGTGTGGAGTGATT 415
|||| |||||||||||| ||||||||||||||||||||||| ||||| |||||||||||
Sbjct 460 ACTGATGGGAAGATTACCGCTGTTCAAACCTTAGTTTCGACTGCATTATGTGGAGTGATA 519
Query 416 CACTCCATTATTGGTGGACAACCATTGTTGATTCTTGGTGTTGCAGAGCCTACTGTTATA 475
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 CATTCCATTATTGGTGGACAACCATTGTTGATTCTTGGTGTTGCAGAGCCTACTGTTATA 579
Query 476 ATGTACACCTTCATGTTCAATTTCGCTAAAAGTAGAACGGATTTGGGCTCTAATCTCTTT 535
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 580 ATGTACACCTTCATGTTCAATTTTGCTAAAAGTAGAACGGATTTGGGCTCTAATCTCTTT 639
Query 536 CTCGCGTGGACCGGATGGGTTTGCTTGTGGACGGGACTGTTGTTGTTCTTGTTAGCTGTG 595
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 640 CTAGCGTGGACCGGATGGGTTTGCTTGTGGACGGGGCTGTTGTTGTTCTTGTTAGCTGTA 699
Query 596 TTAGGCGCTTGCACCTTCATCAGTCGATTCACTCGACTTGCCGGGGAACTGTTTGGTATC 655
|||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 700 TTAGGCGCTTGCACCTTCATCAATCGATTCACTCGACTTGCTGGGGAACTGTTTGGTATT 759
Query 656 CTAATAGCCATGCTTTTCATGCAAGAAGCCATTAGAGGCATTGTGGATGAGTTTGGTGTT 715
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 760 CTAATAGCCATGCTTTTCATGCAAGAAGCCATTAGAGGCATTGTGGATGAGTTTGGTGTC 819
Query 716 CCCGGAAGAACAAATCCAAGATCATCTGAGTTTCAACCTGCTTGGGTATTTGCAAATGGA 775
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 820 CCCGGAAGAACAAATCCAAGATCAGCTGAGTTTCAACCTGCTTGGGTGTTTGCAAATGGA 879
Query 776 ATGTTTGGTTTGGTTTTGTCTTCTGGACTTCTGTATACTGCACTGAAAAGCCGAAAAGCG 835
||||| |||||||||||||||||||||||||| ||||||| ||| ||||||||||||||
Sbjct 880 ATGTTCGGTTTGGTTTTGTCTTCTGGACTTCTCTATACTGGACTAAAAAGCCGAAAAGCA 939
Query 836 AGGTCTTGGAGATTTGGTGCTGAATGGTTACGCGGGTTTGTAGCAGATTATGGTGTTCCA 895
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 940 AGGTCTTGGAGATTTGGTGCTGAATGGTTACGTGGGTTTATAGCAGATTATGGTGTTCCA 999
Query 896 GTGATGGTGGTAGTGTGGACTTGTATATCATACATACCTTGGAAAAGTGTTCCTCAAGGG 955
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1000 GTAATGGTGGTAGTGTGGACTTGTATATCATACATACCTTGGAAAAGTGTTCCTCAAGGG 1059
Query 956 ATACCAAGACGTCTTGTTAGTCCTAATCCATGGTCTCCTGGTGCATATGAGAATTGGACT 1015
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1060 ATACCAAGACGTCTTGTTAGTCCTAATCCATGGTCTCCTGGTGCATATCAGAATTGGACT 1119
Query 1016 GTCATTAAGGAGATGGTGGATGTGCCTGTGCTTTACATTCTTTTAGCGGTTGTTCCAGCG 1075
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1120 GTCATTAAGGAGATGGTGGATGTACCTGTGCTTTACATTCTTTTAGCGGTTGTTCCAGCG 1179
Query 1076 TCAATGATTGCGGTTCTTTACTACTTTGACCATAGTGTAGCTTCGCAGCTCGCACAGCAG 1135
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1180 TCAATGATTGCGGTTCTTTACTACTTTGACCATAGTGTAGCCTCGCAGCTCGCACAGCAG 1239
Query 1136 GAAGATTTCAATCTGAGAAGGCCTCCTGCTTACCATTATGATCTGTTTCTTCTAGGTTTC 1195
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1240 GAAGATTTCAATCTGAGAAAGCCTCCTGCTTACCATTATGATCTGTTTCTTCTAGGTTTC 1299
Query 1196 TTGACAATCCTTTGCGGTCTCATCGGGATTCCTCCATCCAATGGTGTCATCCCTCAGTCT 1255
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1300 TTGACAATCCTTTGCGGTCTCATCGGAATTCCTCCATCCAATGGTGTCATCCCTCAGTCT 1359
Query 1256 CCAATGCACACAAAAAGCTTGGCAACTCTGAATCACCAGTTACTTCGAAACAAACTCGTG 1315
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1360 CCAATGCACACAAAAAGCTTGGCAACACTGAATCACCAGTTACTTCGAAACAAACTCGTG 1419
Query 1316 GCAGCTGCGCGTAAATGCATCAGAAACAATGCAACAATAGGAGAAGTCTATGTAAGCATG 1375
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 1420 GCAGCTGCGCGTAAATGCATCAGAAACAATGCAACAATTGGAGAAGTCTATGGAAGCATG 1479
Query 1376 GAAGAAGCTTACCAACAAATGCAGAGCCCTCTGATACACCAAGAGCCTTCTCGGATTCAG 1435
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1480 GAAGAAGCTTACCAACAAATGCAGAGCCCTCTGATACACCAAGAGCCTTCTCGGATTCAA 1539
Query 1436 GGGCTCAAACAGTCACATACTCAAAAGGCTTCAAACGCCGATGTACTTGTCGACGAAACA 1495
|| ||||| |||||||||| ||||||||||||||||||||||| ||| ||||| ||||||
Sbjct 1540 GGACTCAAGCAGTCACATATTCAAAAGGCTTCAAACGCCGATGCACTGGTCGATGAAACA 1599
Query 1496 GTGTTCGATATAGAGACGGAAGTCGAGAACATACTGCCAGTGGAAGTAAAAGAACAAAGA 1555
||||||||||||||||||||||| ||||| || |||||||| ||||||||||||||||||
Sbjct 1600 GTGTTCGATATAGAGACGGAAGTGGAGAATATTCTGCCAGTAGAAGTAAAAGAACAAAGA 1659
Query 1556 GTAAGTAACTTTCTTCAAGCTATGATGGTGGCTGGATGTGTTGCAGCAATGCCTTTAATC 1615
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1660 GTAAGCAACTTTCTTCAAGCTATGATGGTGGCTGGATGTGTTGCAGCAATGCCTTTGATC 1719
Query 1616 AAAAGAATCCCAAGCTCGGTTCTTTGGGGTTACTTCGCTTACATGGCAATCGAAAGCCTC 1675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1720 AAAAGAATCCCAAGCTCGGTTCTTTGGGGTTACTTCGCTTACATGGCAATCGAAAGCCTC 1779
Query 1676 CCAGGGAATCAATTCTGGGAAAGGATCGTGCTTCTCTTCACTGCCCCAAGCAGAAGATTC 1735
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1780 CCAGGGAATCAATTCTGGGAAAGGATCGTGCTTCTCTTCACTGCCCCAAGTAGAAGATTC 1839
Query 1736 AAAGTTCTTGAGGATAATCATGCTGTGTTTGTTGAAACGGTTCCGTTTAAGACAATGGCG 1795
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1840 AAAGTTCTTGAGGATAATCATGCTGTGTTTATTGAAACGGTTCCGTTTAAGACAATGGCG 1899
Query 1796 ATGTTTACTTTGTTTCAAGCGGCGTACTTGCTGGTCTGCTTCGGGATCACGTGGGTTCCG 1855
||||||||| |||||||| | || ||||| ||||||||||| || |||||||||||||||
Sbjct 1900 ATGTTTACTCTGTTTCAAACCGCTTACTTACTGGTCTGCTTTGGCATCACGTGGGTTCCG 1959
Query 1856 GTAGCGGGAGTTTTGTTCCCGTTGATGATAATGTTTCTTGTTCCGGTTAGGCAATATGTA 1915
|| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1960 GTGGCCGGAGTTTTGTTCCCGTTGATGATAATGTTTCTTGTTCCAGTTAGGCAATATGTG 2019
Query 1916 TTGCCTAATTTCTTCAAAGGAGCTCATCTTCAAGACTTGGATGCTGCAGAGTATGAAGAA 1975
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2020 TTGCCTAATTTCTTCAAAGGAGCTCATCTTCAAGACTTGGATGCTGCAGAGTATGAAGAA 2079
Query 1976 GCACCTGCTATCTTATCATTCAATCTCAAACCGGAAGGGGAAGTGAGCCGTGCAACGTCG 2035
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2080 GCACCTGCTATCTTATCATTCAATCTCAAACCGGAAGGGGAAGTGAGCCGTGCGACGTCG 2139
Query 2036 TTTGCGGATAGTGGAGAAGTGATGGACGGAATGTTTACGAGAAGCAGAGGAGAGATAAGG 2095
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2140 TTTGCGGATAGTGGAGAAGTGATGGACGGAATGTTTACGAGAAGCAGAGGAGAGATAAGG 2199
Query 2096 AAAGTGAGCAGCTTGAAACTCGGCGG---AGGAAGTGGATCGACGGGAGGTTCGCCGGCG 2152
||||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||
Sbjct 2200 AAAGTGAGCAGCTTGAAGCTAGGCGGTGGAGGAAGTGGATCGACGGTAGGTTCGCCGGCG 2259
Query 2153 GGAGGAG---TGGAGTTGATGAGACGGGTGGTGAGTTTTCAGAATCCAAGAGTGTCGGAG 2209
||||||| |||||||||||||| | ||||||||||||||||||||||| |||||||||
Sbjct 2260 GGAGGAGGAGTGGAGTTGATGAGAAGAGTGGTGAGTTTTCAGAATCCAAGGGTGTCGGAG 2319
Query 2210 AAAGTATATATCCGGAGCTTAAGTGATTTCAGAGGAGGAGGAGAGATTAGTCCACGGTCT 2269
||||| || || |||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 2320 AAAGTGTACATTCGGAGCTTAAGTGATTTCAGAGGAGGTGGAGAGATTAGTCCACGATCG 2379
Query 2270 TCCGCTGGAAGAGCTCCGTTCAGTCCACGATCCGCTGCCGGAGG---AGGAGGAGAACAA 2326
||||||||||||||||||||||||||||||||||| | || || ||||||||||||
Sbjct 2380 TCCGCTGGAAGAGCTCCGTTCAGTCCACGATCCGCCACGGGTGGTGGAGGAGGAGAACAG 2439
Query 2327 AGACTTTCTAATTTAGGAAAGTCTGTTTAACAAACAGTACAGTGTAGTGTTCTCTCTCTA 2386
||||||||||||||||||||||||||||| |||||||| |||||||| | |||||||||
Sbjct 2440 AGACTTTCTAATTTAGGAAAGTCTGTTTAGTAAACAGTATAGTGTAGTCT-CTCTCTCTA 2498
Query 2387 TTCAGATTTGTTCTAACCAACCAATCCTATATAGCTAAGTTATTCCATTTGTCTGT 2442
|||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 2499 TTCATATTTGTTCTAACCAACCAATCCTATATAGCCAAGTTATTCCATTTGCCTGT 2554
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121284516720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5