BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477951
Length=941
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06460.1 | Symbols: | GNS1/SUR4 membrane protein family | c... 1282 0.0
AT3G06470.1 | Symbols: | GNS1/SUR4 membrane protein family | c... 750 0.0
> AT3G06460.1 | Symbols: | GNS1/SUR4 membrane protein family |
chr3:1982659-1983714 FORWARD LENGTH=1056
Length=1056
Score = 1282 bits (694), Expect = 0.0
Identities = 847/922 (92%), Gaps = 6/922 (1%)
Strand=Plus/Plus
Query 1 AAACTAACTTCGCTGGATAATAATGGCATCGGTTTACTCCACCCTAACCTACTGGCTCGT 60
|||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 AAACTAACTTCGCTAGAGAATAATGGCATCTGTTTACTCCACCCTAACCTACTGGCTCGT 60
Query 61 GCACCACCCCTACATCGCCAACTTCACATGGACCGAAGGTGAAACCCTAGGCTCCACCGT 120
|||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 61 CCACCACCCCTACATTGCCAACTTCACGTGGACCGAAGGTGAAACACTAGGCTCCACCGT 120
Query 121 CTTCTTTGTCTCCGTCGTCGTTTCTGTTTACCTCTCCGCCACATTCATCCTCCGATACAC 180
|||||||||| |||||||| || |||||||||||||||||||| |||||||||||||
Sbjct 121 TTTCTTTGTCTTTGTCGTCGTCTCCCTTTACCTCTCCGCCACATTCCTCCTCCGATACAC 180
Query 181 CGTGGATTCACTCCCCTCTCTCGGTCCCCGCATTCTCAAACCGATCACAGCCGTCCACAG 240
||| |||||||||||| | ||||||||||||||||||||||| ||||||||||| |||||
Sbjct 181 CGTCGATTCACTCCCCACACTCGGTCCCCGCATTCTCAAACCAATCACAGCCGTTCACAG 240
Query 241 CCTCATTCTCTCCCTCCTATCCTTAACCATGGCCGTTGGTTGCACTCTCTCCCTAATCTC 300
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CCTCATTCTCTTCCTCCTCTCCTTAACCATGGCCGTTGGTTGCACTCTCTCCCTAATCTC 300
Query 301 GT-CTCAAGATCCGAAGGCGCGCCTCTTCGACGCCGTTTGTTTCCCAGTCGATGTGAAAC 359
| ||| || ||||||||||| ||||||||||||||||||||||| |||| |||||||
Sbjct 301 TTCCTC-GGACCCGAAGGCGCGTCTCTTCGACGCCGTTTGTTTCCCCCTCGACGTGAAAC 359
Query 360 CTAAGGGACCGCTTTTCTTTTGGGCTCAAGTCTTTTACCTCTCCAAGATCCTGGAGTTCG 419
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 360 CTAAGGGACCGCTTTTCTTTTGGGCTCAAGTCTTTTACCTCTCGAAGATCCTTGAGTTCG 419
Query 420 TAGACACACTTCTCATCATACTCAACAAATCAATCCACCGGCTCTCGTTCCTCCACGTCT 479
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 420 TAGACACACTTCTCATCATACTCAACAAATCAATCCAACGGCTCTCGTTCCTCCACGTCT 479
Query 480 ACCACCACGCAACGGTTGTGATTTTGTGCTACCTCTGGTTACGAACACGCCAATCTTTGT 539
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 480 ACCACCACGCAACGGTTGTGATTTTGTGCTACCTCTGGTTACGAACACGTCAATCGATGT 539
Query 540 TTCC-GATTTGTCTCGTGACGAACTCGACGGTCCATGTCATTATGTACGGTTACTACTTC 598
|||| | || | |||||| |||||||||||||||||| ||||||||||| ||||| |||
Sbjct 540 TTCCTG-TTGGGCTCGTGTTGAACTCGACGGTCCATGTGATTATGTACGGGTACTATTTC 598
Query 599 CTCTGCGCCGTTGGATCGAGGCCCAAGTGGAAGAAGTTGGTGACGAATGTTCAAATTGTT 658
|||||||| | |||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 599 CTCTGCGCTATCGGATCGAGGCCCAAGTGGAAGAAGTTGGTGACGAATTTTCAAATGGTT 658
Query 659 CAGTTTGTTTTCGGCTTGGGGTTAGGAGCCGTTTGGATGCTCCCGGAGCATTATTTCGGG 718
||||||| ||||||| ||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 659 CAGTTTGCTTTCGGCATGGGGTTAGGAGCCGCTTGGATGCTCCCAGAGCATTATTTCGGG 718
Query 719 TCAGGTTGCTCCGGGATTTGGGCAAGTT-ATTTCAATGGTGTGTTTAGTGCTTCTCTCTT 777
|| |||||| ||||||||||| || ||| |||||||||||||||||| ||||||||| ||
Sbjct 719 TCGGGTTGCGCCGGGATTTGGACA-GTTTATTTCAATGGTGTGTTTACTGCTTCTCTATT 777
Query 778 GGCTCTCTTCTACAACTTCCATTCCAAAAACTACGTGAAGACTACAACCTCGCGTATGTA 837
||||||||||||||||||||| ||||| ||||| | |||||||||||| |||| | ||||
Sbjct 778 GGCTCTCTTCTACAACTTCCACTCCAAGAACTATGAGAAGACTACAACGTCGCCTTTGTA 837
Query 838 TAAGATCGAATCCTTTCTATTTATAAACGGAGAGAGGTGGGCAAAGAAAGCGATTAGATT 897
|||||||||||||||| ||||||| ||||||||||||||||||| |||||||||| |||
Sbjct 838 TAAGATCGAATCCTTTATATTTATTCACGGAGAGAGGTGGGCAAATAAAGCGATTACATT 897
Query 898 ATTTTCCATGAAAAATGATTAA 919
|||||||| |||||| ||||||
Sbjct 898 ATTTTCCAAGAAAAACGATTAA 919
> AT3G06470.1 | Symbols: | GNS1/SUR4 membrane protein family |
chr3:1984168-1985259 FORWARD LENGTH=1092
Length=1092
Score = 750 bits (406), Expect = 0.0
Identities = 686/817 (84%), Gaps = 36/817 (4%)
Strand=Plus/Plus
Query 23 ATGGCATCGGTTTACTCCACCCTAACCTACTGGCTCGTGCACCACCCCTACATCGCCAAC 82
|||||||| |||||||| | |||||||||||||||| |||||||||||||| ||||
Sbjct 39 ATGGCATCAATTTACTCCTCTTTAACCTACTGGCTCGTTAACCACCCCTACATCTCCAAT 98
Query 83 TTCACATGGACCGAAGGTGAAACCCTAGGCTCCACCGTCTTCTTT-GTCTCCGTCGTCGT 141
|| || |||| |||||||||||||||||||||||||||||| ||| || |||||||| ||
Sbjct 99 TTTACTTGGATCGAAGGTGAAACCCTAGGCTCCACCGTCTT-TTTCGTATCCGTCGTAGT 157
Query 142 TTCTGTTTACCTCTCCGCCACATTCATCCTCCGATACACCGTGGATTCACTCCCCTCTCT 201
|| ||||||||||||||||| ||| ||||||||| | || | ||||||||||| || ||
Sbjct 158 CTCCGTTTACCTCTCCGCCACGTTCCTCCTCCGATCCGCCATCGATTCACTCCCATCACT 217
Query 202 CGGTCCCCGCATTCTCAAACCGATCACAGCCGTCCACAGCCTCATTCTCTCCCTCCTATC 261
| |||| || || ||||||||||||||||||||||||||||| || |||| ||||| ||
Sbjct 218 CAGTCCACGTATCCTCAAACCGATCACAGCCGTCCACAGCCTAATCCTCTGTCTCCTCTC 277
Query 262 CTTAACCATGGCCGTTGGTTGCACTCTCTC-----CCTAATCT----CGTC-TCAAGATC 311
|||| ||||||||| |||||||||||||| ||| |||| |||| || |||||
Sbjct 278 CTTAGTCATGGCCGTCGGTTGCACTCTCTCAATAACCTCATCTCACGCGTCTTC-AGATC 336
Query 312 CGAAGGCGCGCCT-CTTCGACGCCG-TTTG-TTTCCCAGTCGATGTGAAACCTAAGGGAC 368
||| |||||| | |||| ||| || |||| |||||| ||||| || |||||||| ||||
Sbjct 337 CGATGGCGCGTTTCCTTC-ACG-CGATTTGCTTTCCC-GTCGACGTTAAACCTAACGGAC 393
Query 369 CGCTTTTCTTTTGGGCTCAAGTCTTTTACCTCTCCAAGATCCTGGAGTTCGTAGACAC-A 427
|||||||||| |||||||||||||| |||||||| |||||||| ||||||| |||||| |
Sbjct 394 CGCTTTTCTTCTGGGCTCAAGTCTTCTACCTCTCGAAGATCCTCGAGTTCGGAGACACGA 453
Query 428 CTTCTCATCATACTCAACAAATCAATCCACCGGCTCTCGTTCCTCCACGTCTACCACCAC 487
| |||||||||||| |||||||||||| ||||| || ||||||||||| |||||||||
Sbjct 454 -TCCTCATCATACTCGGCAAATCAATCCAACGGCTATCCTTCCTCCACGTGTACCACCAC 512
Query 488 GCAACGGTTGTGATTTTGTGCTACCTCTGGTTACGAACACGCCAATCTTTGTTTCCGATT 547
|| ||||||||| | |||| || |||||| | ||||| |||||||| ||||||||| |
Sbjct 513 GCGACGGTTGTGGTCATGTGTTATCTCTGGCTCCGAACTCGCCAATCGATGTTTCCGA-T 571
Query 548 TG-TCTCGTGACGAACTCGACGGTCCATGTCATTATGTACGGTTACTACTTCCTCTGCGC 606
|| ||||||||||| |||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 572 TGCGCTCGTGACGAATTCGACGGTACACGTCATCATGTACGGTTACTACTTCCTCTGCGC 631
Query 607 CGTTGGATCGAGGCCCAAGTGGAAGA-AGTTGGTGACGAAT-GTTCAAATTGTTCAGTTT 664
|||||||||||||||||||||||||| | ||||||||| || || || ||||||||||||
Sbjct 632 CGTTGGATCGAGGCCCAAGTGGAAGAGA-TTGGTGACGGATTGT-CAGATTGTTCAGTTT 689
Query 665 GTTTTCGGCTTGGGGTTAGGAGCCGTTTGGATGCTCCCG-GAGCA-TTATTTCGGGTCAG 722
|||||| | || |||||| ||| ||||||||||| | ||||| ||||| |||||| |
Sbjct 690 GTTTTCAGTTTCGGGTTAT---CCGGTTGGATGCTCC-GAGAGCACTTATT-CGGGTCGG 744
Query 723 GTTGCTCCGGGATTTGGGCAAGTTATTTCAATGGTGTGTTTAGTGCTTCTCTCTTGGCTC 782
||||| |||||||||||| | | | |||||| | || |||| ||||||||| |||||||
Sbjct 745 GTTGCACCGGGATTTGGGGATGGTGTTTCAACGCTGCATTTAATGCTTCTCTTTTGGCTC 804
Query 783 TCTTCTACAACTTCCATTCCAAA-AACTACGTGAAGA 818
|||| | |||||||||||| ||| || || || ||||
Sbjct 805 TCTTTTCCAACTTCCATTC-AAAGAATTATGTCAAGA 840
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46014478652
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5