BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477952
Length=980
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06470.1 | Symbols: | GNS1/SUR4 membrane protein family | c... 1417 0.0
AT3G06460.1 | Symbols: | GNS1/SUR4 membrane protein family | c... 730 0.0
> AT3G06470.1 | Symbols: | GNS1/SUR4 membrane protein family |
chr3:1984168-1985259 FORWARD LENGTH=1092
Length=1092
Score = 1417 bits (767), Expect = 0.0
Identities = 923/995 (93%), Gaps = 23/995 (2%)
Strand=Plus/Plus
Query 1 CACCGGAGGCAATGGCATCAATTTCCTCCACTCTAACCTACTGGCTCGTTAACCACCCCT 60
|||||||||| ||||||||||||| |||| || |||||||||||||||||||||||||||
Sbjct 28 CACCGGAGGCTATGGCATCAATTTACTCCTCTTTAACCTACTGGCTCGTTAACCACCCCT 87
Query 61 ACATCGCCAATTTCACTTGGATCGAAGGTGAAACCTTAGGCTCCACCGTCTTCTTCGTCT 120
||||| ||||||| ||||||||||||||||||||| |||||||||||||||| ||||| |
Sbjct 88 ACATCTCCAATTTTACTTGGATCGAAGGTGAAACCCTAGGCTCCACCGTCTTTTTCGTAT 147
Query 121 CCGTCGCT-GTCTCCGTTTACCTCTCCGCCACATTCGTCCTCCGATCCGTCATCGATTCA 179
|||||| | ||||||||||||||||||||||| ||| |||||||||||| ||||||||||
Sbjct 148 CCGTCG-TAGTCTCCGTTTACCTCTCCGCCACGTTCCTCCTCCGATCCGCCATCGATTCA 206
Query 180 CTCCCCA-CACTCAGTCCCCGTATACTCAAACCAATCACAGCCGTTCACAGCCTAGTCCT 238
|| |||| |||||||||| ||||| |||||||| ||||||||||| ||||||||| ||||
Sbjct 207 CT-CCCATCACTCAGTCCACGTATCCTCAAACCGATCACAGCCGTCCACAGCCTAATCCT 265
Query 239 CTGTCTCCTATCCTTAATCATGGCCGTTGGTTGCACTCTCTCCATAACCTCGTCTCACGC 298
||||||||| |||||| |||||||||| |||||||||||||| |||||||| ||||||||
Sbjct 266 CTGTCTCCTCTCCTTAGTCATGGCCGTCGGTTGCACTCTCTCAATAACCTCATCTCACGC 325
Query 299 GTCTTCAGATCCGACGGCGCGTTTCCTAAACGCGATTTG-TTTCCCCCTCGACGTTAAAC 357
|||||||||||||| |||||||||||| |||||||||| ||| ||| ||||||||||||
Sbjct 326 GTCTTCAGATCCGATGGCGCGTTTCCTTCACGCGATTTGCTTT-CCCGTCGACGTTAAAC 384
Query 358 CTAACGGACCGCTTTTCTTCTGGGCTCAAGTCTTCTACCTCTCCAAGATCCTCGAGTTCG 417
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 385 CTAACGGACCGCTTTTCTTCTGGGCTCAAGTCTTCTACCTCTCGAAGATCCTCGAGTTCG 444
Query 418 GAGACACCATCCTCATCATACTCGGCAAATCAATCCAACGGCTCTCGTTCCTCCACGTCT 477
||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct 445 GAGACACGATCCTCATCATACTCGGCAAATCAATCCAACGGCTATCCTTCCTCCACGTGT 504
Query 478 ACCACCACGCGACGGTTGTGGTCATGTGTTATCTCTGGCTCCGAACTCGCCAGTCGATGT 537
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 505 ACCACCACGCGACGGTTGTGGTCATGTGTTATCTCTGGCTCCGAACTCGCCAATCGATGT 564
Query 538 TTCCGGTTGCGCTCGTGACGAATTCGACGGTACACGTCATCATGTACGGTTACTACTTCC 597
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 565 TTCCGATTGCGCTCGTGACGAATTCGACGGTACACGTCATCATGTACGGTTACTACTTCC 624
Query 598 TCTGCGCCGTTGGATCGAGGCCGA-GTTGGAAGAGATTGGTGACGGATTGTCAGATTGTT 656
|||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||
Sbjct 625 TCTGCGCCGTTGGATCGAGGCCCAAGT-GGAAGAGATTGGTGACGGATTGTCAGATTGTT 683
Query 657 CAGTTTGTTTTCAGTTTCGGATTATCCGGTTGGATGCTCCGAGAGCATTTGAT-CGGGTC 715
|||||||||||||||||||| |||||||||||||||||||||||||| || || ||||||
Sbjct 684 CAGTTTGTTTTCAGTTTCGGGTTATCCGGTTGGATGCTCCGAGAGCACTT-ATTCGGGTC 742
Query 716 GGGTTGCTCCGGGATTTGGGGATGGTGTTTCAACGCTGCGTTTAATGCTTCTCTTTTGGC 775
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 743 GGGTTGCACCGGGATTTGGGGATGGTGTTTCAACGCTGCATTTAATGCTTCTCTTTTGGC 802
Query 776 TCTCTTTTCCAACTTTCATTCAAAGAATTATGTCACGAAGACAA-GAGAGGTGGTTGGCA 834
||||||||||||||| ||||||||||||||||||| |||| ||| ||||| || |||||
Sbjct 803 TCTCTTTTCCAACTTCCATTCAAAGAATTATGTCAAGAAGCCAACGAGAGA-GGATGGCA 861
Query 835 TAAAAAGTGATTAGATTAGTTTCTTGGACAATA-GTTAAAACCTCTCATTGTGTCTTGAA 893
|||||| ||||||||| ||||||||||||||| || |||||||||||||||||||||||
Sbjct 862 AAAAAAGCGATTAGATTGGTTTCTTGGACAATAAGT-AAAACCTCTCATTGTGTCTTGAA 920
Query 894 TTGTTGATTAGTTTCCCCACAAAAGGATTAATTGTCTTGAATTGTTGATTATTTTG---- 949
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 921 TTGTTGATTAGTTTCCACACAAAAGGATTAATTGTCTTGAATTGTTGTTTATTTTGAAAT 980
Query 950 ----GTCTGTGTTGTTACTTGAAAATGTTGAGATA 980
||||||||||| ||||| |||||||||||||
Sbjct 981 TTTTGTCTGTGTTGT-ACTTGCAAATGTTGAGATA 1014
> AT3G06460.1 | Symbols: | GNS1/SUR4 membrane protein family |
chr3:1982659-1983714 FORWARD LENGTH=1056
Length=1056
Score = 730 bits (395), Expect = 0.0
Identities = 677/810 (84%), Gaps = 32/810 (4%)
Strand=Plus/Plus
Query 11 AATGGCATCAATTTCCTCCACTCTAACCTACTGGCTCGTTAACCACCCCTACATCGCCAA 70
||||||||| ||| |||||| ||||||||||||||||| ||||||||||||| |||||
Sbjct 22 AATGGCATCTGTTTACTCCACCCTAACCTACTGGCTCGTCCACCACCCCTACATTGCCAA 81
Query 71 TTTCACTTGGATCGAAGGTGAAAC-CTTAGGCTCCACCGTCTTCTTCGTCTCCGTCGCT- 128
||||| |||| |||||||||||| | ||||||||||||| ||||| |||| |||| |
Sbjct 82 CTTCACGTGGACCGAAGGTGAAACAC-TAGGCTCCACCGTTTTCTTTGTCTTTGTCG-TC 139
Query 129 GTCTCCGTTTACCTCTCCGCCACATTCGTCCTCCGATCCGTCATCGATTCACTCCCCACA 188
|||||| |||||||||||||||||||| ||||||||| | | |||||||||||||||||
Sbjct 140 GTCTCCCTTTACCTCTCCGCCACATTCCTCCTCCGATACACCGTCGATTCACTCCCCACA 199
Query 189 CTCAGTCCCCGTATACTCAAACCAATCACAGCCGTTCACAGCCT-AGTCCTCTGT-CTCC 246
||| ||||||| || ||||||||||||||||||||||||||||| | | |||| | ||||
Sbjct 200 CTCGGTCCCCGCATTCTCAAACCAATCACAGCCGTTCACAGCCTCA-TTCTCT-TCCTCC 257
Query 247 TATCCTTAATCATGGCCGTTGGTTGCACTCTCTCCATAACCTCGTCTCACGCGTCTTCAG 306
| ||||||| ||||||||||||||||||||||||| ||| || ||| || || |
Sbjct 258 TCTCCTTAACCATGGCCGTTGGTTGCACTCTCTCCCTAA--TC-TCT------TCCTCGG 308
Query 307 ATCCGACGGCGCGTTTCCTAAACG-CGATTTGTTTCCCCCTCGACGTTAAACCTAACGGA 365
| |||| ||||||| || | ||| || ||||||||||||||||||| |||||||| |||
Sbjct 309 ACCCGAAGGCGCGTCTCTTCGACGCCG-TTTGTTTCCCCCTCGACGTGAAACCTAAGGGA 367
Query 366 CCGCTTTTCTTCTGGGCTCAAGTCTTCTACCTCTCCAAGATCCTCGAGTTCGGAGACACC 425
||||||||||| |||||||||||||| |||||||| |||||||| ||||||| ||||| |
Sbjct 368 CCGCTTTTCTTTTGGGCTCAAGTCTTTTACCTCTCGAAGATCCTTGAGTTCGTAGACA-C 426
Query 426 A-TCCTCATCATACTCGGCAAATCAATCCAACGGCTCTCGTTCCTCCACGTCTACCACCA 484
| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 ACTTCTCATCATACTCAACAAATCAATCCAACGGCTCTCGTTCCTCCACGTCTACCACCA 486
Query 485 CGCGACGGTTGTGGTCATGTGTTATCTCTGGCTCCGAACTCGCCAGTCGATGTTTCCGGT 544
||| ||||||||| | |||| || |||||| | ||||| || || ||||||||||| ||
Sbjct 487 CGCAACGGTTGTGATTTTGTGCTACCTCTGGTTACGAACACGTCAATCGATGTTTCCTGT 546
Query 545 TGCGCTCGTGACGAATTCGACGGTACACGTCATCATGTACGGTTACTACTTCCTCTGCGC 604
|| ||||||| ||| |||||||| || || || |||||||| ||||| |||||||||||
Sbjct 547 TGGGCTCGTGTTGAACTCGACGGTCCATGTGATTATGTACGGGTACTATTTCCTCTGCGC 606
Query 605 CGTTGGATCGAGGCCGA-GTTGGAAGA-GATTGGTGACGGATTGTCAGATTGTTCAGTTT 662
| ||||||||||| | || |||||| | ||||||||| ||| ||| || |||||||||
Sbjct 607 TATCGGATCGAGGCCCAAGT-GGAAGAAG-TTGGTGACGAATTTTCAAATGGTTCAGTTT 664
Query 663 GTTTTCAGTTTCGGATTAT---CCGGTTGGATGCTCCGAGAGCATT-TGATCGGGTCGGG 718
| |||| | | || ||| ||| ||||||||||| |||||||| | ||||||||||
Sbjct 665 GCTTTCGGCATGGGGTTAGGAGCCGCTTGGATGCTCCCAGAGCATTATT-TCGGGTCGGG 723
Query 719 TTGCTCCGGGATTTGGGGATGGTG-TTTCAACGCTGCGTTTAATGCTTCTCTTTTGGCTC 777
|||| ||||||||||| | | | |||||| | || ||||| ||||||||| |||||||
Sbjct 724 TTGCGCCGGGATTTGGACA-GTTTATTTCAATGGTGTGTTTACTGCTTCTCTATTGGCTC 782
Query 778 TCTTTTCCAACTTTCATTCAAAGAATTATG 807
|||| | |||||| || || ||||| ||||
Sbjct 783 TCTTCTACAACTTCCACTCCAAGAACTATG 812
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47973610385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5