BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477955
Length=1348
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06490.1 | Symbols: MYB108, AtMYB108, BOS1 | myb domain prot... 1932 0.0
> AT3G06490.1 | Symbols: MYB108, AtMYB108, BOS1 | myb domain protein
108 | chr3:2003393-2006624 FORWARD LENGTH=1764
Length=1764
Score = 1932 bits (1046), Expect = 0.0
Identities = 1246/1336 (93%), Gaps = 39/1336 (3%)
Strand=Plus/Plus
Query 1 ATTCGAAACTCATCCTTTCTCTATCTACACATAACTCCaaaaaa-aaa-aaa-------- 50
|||| ||||||||||| ||||||||||||||||||||||||||| ||| |||
Sbjct 373 ATTCAAAACTCATCCTATCTCTATCTACACATAACTCCAAAAAACAAACAAATTTTCTCT 432
Query 51 ----a--aCTCTTCGCAAAACAACATAG-AAAAAAGTAGAAAGTCTCAATCTTTTTGCTG 103
| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 433 CTCTATCTCTCTTCGCAAAACAACATAGAAAAAAAGTAGAAAGTCTCAATCTTTTTGCTG 492
Query 104 AA-AAGTCTCGTTGTGCGTCTTTTCTGTGTGTATCAATGGATGAAAAAGGAAGAACCTTG 162
|| || ||| |||||| |||| |||||||| |||||||||||||||||||||||| ||||
Sbjct 493 AACAA-TCTTGTTGTG-GTCTCTTCTGTGTATATCAATGGATGAAAAAGGAAGAAGCTTG 550
Query 163 AAGAACAACAACATGGAAGACGAGATGGACCTAAAGAGAGGTCCGTGGACTGCTGAAGAA 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 551 AAGAACAACAACATGGAAGACGAGATGGACCTAAAGAGAGGTCCGTGGACTGCTGAAGAA 610
Query 223 GATTTTAAGCTCATGAATTACATTGCTACTAATGGAGAAGGTCGATGGAACTCTCTTTCT 282
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 611 GATTTTAAGCTCATGAATTACATTGCTACTAATGGAGAAGGTCGCTGGAACTCTCTTTCT 670
Query 283 CGTTGCGCCGGACTCCAACGTACCGGTAAAAGCTGTAGACTACGGTGGTTAAACTATCTC 342
||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 671 CGTTGCGCCGGCCTCCAACGCACCGGTAAAAGCTGTAGACTAAGGTGGTTAAACTATCTC 730
Query 343 CGCCCTGACGTCCGCCGAGGAAACATTACACTCGAAGAACAACTCTTGATCCTCGAACTT 402
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 731 CGCCCTGACGTCCGCCGTGGAAACATTACACTTGAAGAACAACTCTTGATCCTCGAACTT 790
Query 403 CATTCCCGTTGGGGCAATAGATGGTCAAAAATCGCACAATATTTACCGGGAAGAACGGAC 462
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 791 CATTCCCGTTGGGGAAATAGATGGTCAAAAATCGCACAATATTTACCGGGAAGAACGGAC 850
Query 463 AACGAGATCAAGAACTACTGGAGGACGCGAGTGCAAAAGCATGCGAAACAGTTGAAATGT 522
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 851 AACGAGATCAAGAACTACTGGAGGACGCGGGTGCAAAAGCATGCGAAACAGTTGAAATGT 910
Query 523 GACGTGAACAGCCAACAATTCAAAGACACAATGAAGTACTTGTGGATGCCTCGGCTAGTC 582
|| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 911 GATGTGAATAGCCAACAATTCAAAGACACAATGAAGTACTTGTGGATGCCTCGACTAGTC 970
Query 583 GAGAGGATCCAGTCAGCCTCGGCCTCAGCCGCAGCAGCAGCCACCACTACAACCACCAAC 642
|||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||| |
Sbjct 971 GAGAGGATTCAGTCAGCCTCGGCCTCATCCGCAGCAGCAGCCACCACCACAACCACCACC 1030
Query 643 ACCACGGGTTCAGCCGGCACGTCATCTTGCATCACAACCTCTAACAATCAATTCATGAAT 702
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1031 ACCACAGGATCAGCCGGCACGTCATCTTGCATCACAACCTCTAACAATCAATTCATGAAT 1090
Query 703 TACGAATACAACAACAACA---TGGGACAACAGTATGGTGTGATGAGCAACAATGATTAT 759
||||| ||||||||||||| |||||||||||| |||||| ||||||||||||||||||
Sbjct 1091 TACGACTACAACAACAACAACATGGGACAACAGTTTGGTGTAATGAGCAACAATGATTAT 1150
Query 760 ATCACGCCGGAAAATTCCAGCGTTGCAGTGTCTCCGGCGTCAGACTTGACGGAGTACTAC 819
|||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1151 ATCACGCCTGAAAATTCCAGCGTGGCAGTGTCTCCGGCGTCAGACTTAACGGAGTACTAC 1210
Query 820 AGCGCTCCAAACCCGAACCCGGAATACTATTCGGGTCAAATGGGGAATAGTTATTATCCG 879
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1211 AGCGCTCCAAACCCTAACCCGGAATACTATTCGGGTCAAATGGGGAATAGTTATTATCCA 1270
Query 880 GATCAGAATTTGGTGGGTTCACAATTATTACCGGAGAATTATTTCGATTACAATGGATTA 939
||||||||||| ||| ||||||||||||||||||| ||||||||||| || | |||||||
Sbjct 1271 GATCAGAATTTAGTGAGTTCACAATTATTACCGGATAATTATTTCGACTATAGTGGATTA 1330
Query 940 TTAGACGAAGATCTAACGACTATGGAAGAGCAGAGTAACCTCAACTGGTTTGAAAACATT 999
|||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1331 TTAGACGAAGATCTAACGGCTATGCAAGAGCAGAGTAACCTCAGCTGGTTTGAAAACATT 1390
Query 1000 AATGGTGCTGCTTCTTCGTCAGACAGTTTATGGAACATTGGAGAAACTGATGAAGACTTC 1059
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1391 AATGGTGCTGCTTCTTCTTCAGACAGTTTATGGAACATTGGAGAAACTGATGAAGAATTC 1450
Query 1060 TGGTTCTTACAGCAGCAACAACA-TCTCAACAATAATGGTAGCTTCTGAATTTTGAAAGC 1118
||||||||||||||||||||||| | |||||||||||||||||||||||| || | |
Sbjct 1451 TGGTTCTTACAGCAGCAACAACAGT-TCAACAATAATGGTAGCTTCTGAAGTT--A--G- 1504
Query 1119 AAAGAAAAAAGACTAGAAATCGTTTTAAGTTTATTATTATACACTA-AGTATACGTGTGA 1177
||| |||||| | |||||||||||||||||| | ||||||||||| |||||||||||||
Sbjct 1505 AAA-AAAAAA-A-TAGAAATCGTTTTAAGTTAA--ATTATACACTATAGTATACGTGTGA 1559
Query 1178 AAGGAATTTGT-GTTAAGGGAATAATTAAAGACAAAGAATGTGTTCATAGGATATATGAT 1236
||||||||||| || ||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 1560 AAGGAATTTGTTGT-AAGGGAATAATTAAAAACAAAGAAT-TGTTCATAGGATATATGAT 1617
Query 1237 CAGCTTTTTTATTCCAAGCTTGATCATGTATCATGGCGTTTTAACATAGCGCTAAACTTG 1296
||| |||||||| |||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 1618 CAGGTTTTTTATACCAAGCTTGATCATATATCATGGCGTTTTAACAAAGCGCTAAACTTG 1677
Query 1297 ATTGGttttttttttt 1312
||||||||| ||||||
Sbjct 1678 ATTGGTTTTGTTTTTT 1693
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66365120490
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5