BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477964
Length=1710
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06560.1 | Symbols: PAPS3 | poly(A) polymerase 3 | chr3:2044... 2529 0.0
AT5G02670.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 230 5e-59
> AT3G06560.1 | Symbols: PAPS3 | poly(A) polymerase 3 | chr3:2044352-2047209
FORWARD LENGTH=1790
Length=1790
Score = 2529 bits (1369), Expect = 0.0
Identities = 1563/1654 (94%), Gaps = 23/1654 (1%)
Strand=Plus/Plus
Query 1 AAGGCGAAGCGGAGAGACTACACCAATTTTGCTTCTTTGTTTTTCTGCAAAGATTTTTCT 60
||||||||||||||||||| ||||||||||| |||| ||||||| |||||| ||||||
Sbjct 8 AAGGCGAAGCGGAGAGACTCCACCAATTTTG---CTTTCTTTTTCTTCAAAGA-TTTTCT 63
Query 61 CGGAAAACAAGGCAAGAAAATCTGACATTCCTGGAAATGAAAAAGGGAGGTGGGAGAAAT 120
||| |||| | ||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 64 CGGGAAAC-A---AAG----TCTGACATTCCTGGCAATGAAAAAGGGAGGTGGGAGAAAT 115
Query 121 AAAGGTTTTCCTCCTTCTATGGAAGATGAAAGCTCGATTTCGCTTCGTCAGCTGATGGTT 180
||||| ||| | || || | || || ||||||||||| |||||||||||||||||||||
Sbjct 116 AAAGG-TTT-C-CC-TC-A-AGATGACGAAAGCTCGATCTCGCTTCGTCAGCTGATGGTT 169
Query 181 AATGAAGGACTCATTCCATCTCTTGAAGATCAGGAGAAACGAAGAGTTGTCATCAAT-AT 239
|||||||||||||||||||||||||||||| ||| ||||||||||| ||| |||||| |
Sbjct 170 AATGAAGGACTCATTCCATCTCTTGAAGATGAGGTGAAACGAAGAGGTGTTATCAATCA- 228
Query 240 GCTACGAAAGATAGTGGTGAGATGGGTTAAGAATGTTGCCTGGCAACACCGTCTTCCACA 299
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 229 GCTACGAAAGATAGTTGTGAGATGGGTTAAGAATGTTGCCTGGCAACACCGTCTTCCACA 288
Query 300 AAATCAGATTGACGCCACCAACGCCACCATTTTACCTTATGGTTCTTATGCTCTTGGGGT 359
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 289 AAATCAGATTGACGCCACCAACGCCACCATTTTACCTTATGGTTCTTATGGTCTTGGGGT 348
Query 360 TTATGGTTCTGAATCAGACATTGACGCTCTCTGCATTGGTCCTTTCTTTGCCTCTATTGC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 TTATGGTTCTGAATCAGACATTGACGCTCTCTGCATTGGTCCTTTCTTTGCCTCTATTGC 408
Query 420 TGAGGATTTTTTCATCTCCTTGCGTGATATGTTGAAAAGCAGACGAGAAGTTTCCGAGGT 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 409 TGAGGATTTTTTCATCTCCTTGCGTGATATGTTGAAAAGCAGACGAGAAGTTTCCGAGCT 468
Query 480 TCATTGTGTTAAAGATGCAAAAGTTCCTCTCATCCGCTTTAAGTTTGATGGGATCTTGGT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 TCATTGTGTTAAAGATGCAAAAGTTCCTCTCATCCGCTTTAAGTTTGATGGGATCTTGGT 528
Query 540 TGATCTCCCATATGCTCAGCTTAGAGTACTATCCATTCCAAACAATGTAGATGTGCTTAA 599
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 529 TGATCTTCCATATGCTCAGCTTAGAGTATTATCCATTCCAAACAATGTAGATGTGCTTAA 588
Query 600 TCCTTTCTTTCTGAGGGATATTGACGAGACAAGTTGGAAAAGCTTGTCTGGAGTTCGTGC 659
|||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||
Sbjct 589 TCCTTTCTTTCTGAGGGACATTGATGAGACAAGTTGGAAAATCTTGTCTGGAGTTCGTGC 648
Query 660 AAATAAATGCATACTTCAATTAGTGCCTTCCTTAGAGCTATTCCAATCATTGCTGCGGTG 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 AAATAAATGCATACTTCAATTAGTGCCTTCCTTAGAGCTATTCCAATCATTGCTGCGGTG 708
Query 720 TGTCAAATTATGGGCAAAGAGGCGAGGTGTATACGGTAATTTGAATGGATTTCTAGGAGG 779
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 709 TGTCAAATTATGGGCCAAGAGGCGAGGTGTATACGGTAATTTGAATGGATTTCTAGGGGG 768
Query 780 AGTTCATATGGCTATTCTTGCTGCATTTGTTTGTGGATACGAATCGAATGCAACATTGAG 839
|||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||
Sbjct 769 AGTTCATATGGCTATTCTTGCTGCATTTGTCTGTGGATACCAACCGAATGCAACATTGAG 828
Query 840 TTCCCTTCTGGCAAATTTCTTCTACATATTTGCTCATTGGCAATGGCCTACACCGGTGGT 899
|||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||
Sbjct 829 TTCCCTTCTGGCAAATTTCTTCTACACATTTGCGCATTGGCAATGGCCTACACCAGTGGT 888
Query 900 GCTGCTAGAGGACACTTATCCAGCTACTGGGGCTCCTCCAGGCTTAATGCCCATCCAATT 959
| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
Sbjct 889 GTTGCTAGAGGACACTTATCCATCTACTGGGGCTCCTCCAGGCTTAATGCCAATCCAACT 948
Query 960 GCCATGTGGTTCACATCAATACTGCAACTCCAACATAACAAGAAGCACATTTTACAAGAT 1019
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 949 GCCATGCGGTTCACATCAATACTGCAACTCCACCATAACAAGAAGCACATTTTACAAGAT 1008
Query 1020 AATGGCAGAGTTTCTACGAGGGCATAATTTGACAAAGGACTACTTGAAGCCCAACTTCAG 1079
| ||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||
Sbjct 1009 AGTGGCAGAGTTTCTACTAGGGCATAATTTGACAAAGGATTACTTGAAGCTCAACTTCAG 1068
Query 1080 TTGGAAGAATTTGTTTGAGCTCTATCCATACGAAAACACATACACGTGGTTCACCAAAAT 1139
||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1069 TTGGAAGGATTTGTTTGAGCTCTATCCATATGCAAACACATACACGTGGTTCACCAAAAT 1128
Query 1140 ACACCTCTCGGCTGCTAACCAGGAAGATCTCAGTGATTGGGTTGGTTGGGTTAAGTCACG 1199
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 ACATCTCTCGGCTGCTAATCAGGAAGATCTCAGTGATTGGGTTGGTTGGGTTAAGTCACG 1188
Query 1200 TTTCCGTTGTCTTCTGATCAAGATAGAGGAAGTTTATGGCATTTGCGATCCAAACCCAAC 1259
||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1189 TTTCCGTTGTCTTCTTATCAAGATAGAGGAAGTCTATGGCATTTGCGATCCAAATCCAAC 1248
Query 1260 AGAGTATGTTGAAACCCATACAAAGCAGCCAAACATTGTCTTTTACTGGGGATTACAGCT 1319
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1249 AGAGTATGTTGAAACCTATACAAAGCAGCCAAACATTGTCTTTTACTGGGGATTACAGCT 1308
Query 1320 CAGAACCATAAATGTTTCGGACATTGAATCTGTGGAGACAGAATTTCTGAAGAATGTCAA 1379
||||||||| |||||||||||||||||||||||| ||| ||| |||||||||||||||||
Sbjct 1309 CAGAACCATTAATGTTTCGGACATTGAATCTGTGAAGATAGACTTTCTGAAGAATGTCAA 1368
Query 1380 CAGTGGAAGCTTCCAGGGACCAGTTGGTAGAATCCAGTTATCGGTTGT-AGAAGCGTCTC 1438
|||||||||||||| |||| |||||||||||||||||||| | |||| | |||||||||
Sbjct 1369 CAGTGGAAGCTTCCGGGGAACAGTTGGTAGAATCCAGTTAACCCTTGTCA-AAGCGTCTC 1427
Query 1439 AACTGCCTAAGAATGGTGAGTGTGCTAGCAACAACAGAAGCAAGAAGGTGACAAAGACTT 1498
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1428 AACTGCCTAAGAATGGTGAGTGTGGTAGCAACAACAGAAGCAAGAAGGTGACAAAGACTT 1487
Query 1499 GTTGGAGAATCCGGGAAAATAAGCAATGCAATAATGTACCGGTTTACTCACATCATTTGC 1558
||||| ||||||||||| ||||||| |||||||||||||||||||||||| | |||||||
Sbjct 1488 GTTGGCGAATCCGGGAAGATAAGCAGTGCAATAATGTACCGGTTTACTCAAAGCATTTGC 1547
Query 1559 CTGGTTATGTGGTTGGGTATCAGAAGATGGCTAACAGAGAAGCTGATGGTATGGCGGGTT 1618
|||||||||||||||||||||| ||||||| ||||||||||||||||||||||| || ||
Sbjct 1548 CTGGTTATGTGGTTGGGTATCAAAAGATGGTTAACAGAGAAGCTGATGGTATGGAGG-TT 1606
Query 1619 AAATGTTAGGTTATGTTAGTAGTAATGATTGTTT 1652
|||||||||||| |||||||||||||||| ||||
Sbjct 1607 AAATGTTAGGTTGTGTTAGTAGTAATGATGGTTT 1640
> AT5G02670.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: poly(A) polymerase 3 (TAIR:AT3G06560.1); Has 14 Blast
hits to 8 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr5:602722-604606 REVERSE
LENGTH=1368
Length=1368
Score = 230 bits (124), Expect = 5e-59
Identities = 185/213 (87%), Gaps = 10/213 (5%)
Strand=Plus/Plus
Query 1316 AGCTCAGAACCATAAATGTTTCGGACATTGAATCTGTGGAGACAGAAT-T-TCTGAAGAA 1373
||| |||||||| ||||| | ||||||||||||||||||||||||| | | |||| ||||
Sbjct 797 AGCGCAGAACCAGAAATGCTCCGGACATTGAATCTGTGGAGACAGACTCTCTCTGCAGAA 856
Query 1374 TGTCAACAG-TGGAAGCTTCCAGGGACCAGTTGGTAGAATCCAGTTATCGGTTGTAG-AA 1431
| ||||||| | ||||||||||||||||||| |||||||||| ||||||| | | ||
Sbjct 857 TCTCAACAGCTTCCTGCTTCCAGGGACCAGTTGGCAGAATCCAGTCATCGGTT-TTGAAA 915
Query 1432 GCGTCTCAACTGCCTAAGAATGGTGAGTGTGCTAGCAACAACAGAAGCAAGAAGGTGACA 1491
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 916 GCATCTCAGCTGCCTAAGAATGGTGAGTGTGCTAGCAACAACAGAAGCAAGAAGGTGACA 975
Query 1492 AAGAC-T-T-G-TTGGAGAA-TCCGGGAAAATA 1519
||||| | | | |||||||| || ||||| |||
Sbjct 976 AAGACCTGTTGGTTGGAGAAATCTGGGAAGATA 1008
Score = 213 bits (115), Expect = 5e-54
Identities = 162/184 (88%), Gaps = 6/184 (3%)
Strand=Plus/Plus
Query 1306 TGGGGATTACAGCTCAGAACCATAAATGTTTCGGACATTGAATCTGTGGAGACAGAAT-T 1364
||| |||| | ||||||||||||||||||| |||||| |||||||||||||||||| | |
Sbjct 617 TGGAGATT-CTGCTCAGAACCATAAATGTTCCGGACACTGAATCTGTGGAGACAGACTCT 675
Query 1365 -TCTGAAGAATGTCAACAG-TGGAAGCTTCCAGGGACCAGTTGGTAGAATCCAGTTATCG 1422
|||| ||||| ||||||| | ||||||||||||||||||| |||||||||| ||||
Sbjct 676 CTCTGCAGAATCTCAACAGCTTCCTGCTTCCAGGGACCAGTTGGCAGAATCCAGTCATCG 735
Query 1423 GTTGTAG-AAGCGTCTCAACTGCCTAAGAATGGTGAGTGTGCTAGCAACAACAGAAGCAA 1481
||| | | |||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 736 GTT-TTGAAAGCATCTCAGCTGCCTAAGAATGGTGAGTGTGCTAGCAACAACAGAAGCAA 794
Query 1482 GAAG 1485
||||
Sbjct 795 GAAG 798
Score = 183 bits (99), Expect = 4e-45
Identities = 122/133 (92%), Gaps = 2/133 (2%)
Strand=Plus/Plus
Query 1371 GAATGTCAACAGTGGAAGCTTCCAGGGACCAGTTGGTAGAATCCAGTTATCGGTTGTAG- 1429
|||| |||||| ||||||||||| ||||||||||||||||||||||||||||||| | |
Sbjct 483 GAATCTCAACAATGGAAGCTTCCTGGGACCAGTTGGTAGAATCCAGTTATCGGTT-TTGA 541
Query 1430 AAGCGTCTCAACTGCCTAAGAATGGTGAGTGTGCTAGCAACAACAGAAGCAAGAAGGTGA 1489
|||| ||||| || ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 542 AAGCATCTCAGCTACCTAAGAATTGTGAGTGTGCTAGCAACAACAGAAGCAAGAAGGTGA 601
Query 1490 CAAAGACTTGTTG 1502
||||||| |||||
Sbjct 602 CAAAGACCTGTTG 614
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84537717780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5