BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477966
Length=764
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06590.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 1007 0.0
> AT3G06590.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr3:2054423-2055414 REVERSE LENGTH=992
Length=992
Score = 1007 bits (545), Expect = 0.0
Identities = 706/781 (90%), Gaps = 22/781 (3%)
Strand=Plus/Plus
Query 1 GAGATCAGAACCAATTCTCTGTTTATGGCGTCTCTGATCTCAGATATTGAACCGCCGAC- 59
||||||||| |||||| | || |||||||||||||||||||||||||||||||||||||
Sbjct 79 GAGATCAGAGCCAATTATTTGGTTATGGCGTCTCTGATCTCAGATATTGAACCGCCGACG 138
Query 60 -G----A---CAGATCTCGTTCGGAGGAAGAAGAGATCCTCTGTC-TCCTCCGCCGCATC 110
| | |||||||||||||||| |||||||||||||||| | || |||||||||||
Sbjct 139 AGTACTACTTCAGATCTCGTTCGGAGAAAGAAGAGATCCTCTG-CTTCATCCGCCGCATC 197
Query 111 GTCTAGTACAACCGCAGGTTCCGTCTCCAGTGAGAGCCACGCGCGATGGAGATCGGAGAA 170
|||| || ||| |||| |||||||||| |||||| |||||||||||| ||||||||||
Sbjct 198 GTCTCGTTCAAGCGCATCTTCCGTCTCCGGTGAGATTCACGCGCGATGGCGATCGGAGAA 257
Query 171 GCAACAACGGATCTACTCAGCCAAACTGATT-CAGGCGCTCCAACAAGTCCGCCTCAACT 229
|||||||||||||||||||||||||||| || || |||||||||||||||||||||||||
Sbjct 258 GCAACAACGGATCTACTCAGCCAAACTG-TTCCAAGCGCTCCAACAAGTCCGCCTCAACT 316
Query 230 CTTCCGCCGCGACATCATCATCTCCAACGGCTCAGAAACGAGGCAAA-GCCGTCCGTGAA 288
|||||||| | |||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 317 CTTCCGCCTCAACATCATCATCTCCAACGGCTCAGAAACGAGG-AAAGGCCGTCCGTGAA 375
Query 289 GCCGCCGATCGAGCTCTCGCCGTTTCCGCTCGTGGAAGAACGCTCTGGAGCAGAGCGATC 348
||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||
Sbjct 376 GCCGCCGATCGAGCTCTTGCCGTTTCCGCTCGGGGAAGAACACTCTGGAGCAGAGCGATC 435
Query 349 CTAGCTAATCGGATCAAACTGAAATTCCGTAAACAGAAACGGCCGAGAACTACGACGAAG 408
||||||||||||||||||||||||| |||||||||| ||| || || |||||| | |
Sbjct 436 TTAGCTAATCGGATCAAACTGAAATTTCGTAAACAGAGACGTCCTCGAGCTACGATGGCG 495
Query 409 ATTCCGTCCATGACCACGGTGG-T-G-AATAGCAGCAACAGATCGAGGAAACGAAGAGTG 465
|||||| ||||||| ||||||| | | | ||||||||||||||||| ||||| ||||||
Sbjct 496 ATTCCGGCCATGACTACGGTGGTTAGTAGCAGCAGCAACAGATCGAGAAAACGGAGAGTG 555
Query 466 TCGGTGTTGAGATTGAATAAGAAGAATATACCGGATGTTAACCGGAAAGTACGTGTACTA 525
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 556 TCGGTGTTGAGATTGAATAAGAAGAGTATACCGGATGTTAACCGGAAAGTACGTGTTCTA 615
Query 526 GGCCGGTTAGTTCCCGGTTGTGGGAAACAATCCGTACCGGTGATTTTAGAAGAAGCAACT 585
|||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||
Sbjct 616 GGCCGGTTAGTTCCCGGTTGCGGTAAACAATCCGTACCGGTGATTCTAGAAGAAGCAACT 675
Query 586 GATTATATTCAGGCTCTGGAGATGCAGGTCAGAGCCATGAACTCTTTAGTTCAGCTTCTC 645
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 676 GATTATATTCAGGCTCTGGAGATGCAAGTGAGAGCCATGAACTCTTTAGTTCAGCTTCTC 735
Query 646 TCCTCCTACGGCTCCGCTCCTCCACCGATTTGATGAGGTTAAAATCGTCTTTTAAATTCT 705
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 736 TCCTCCTACGGCTCAGCTCCTCCACCGATTTGATGAGGTTAAAATCGTCTTTTTAATTCT 795
Query 706 CCCATCA-TC-ATCTCTCTATCTTCTAATGTGTATATAGAAGATTCGGTTTGAGTATAAT 763
||||| || |||| || | | || |||||||||||||||||||||||||| ||||||
Sbjct 796 ACCATCTCTCGATCTTTC-A-CAGCTTATGTGTATATAGAAGATTCGGTTTGATTATAAT 853
Query 764 C 764
|
Sbjct 854 C 854
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37123034633
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5