BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477966 Length=764 Score E Sequences producing significant alignments: (Bits) Value AT3G06590.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 1007 0.0 > AT3G06590.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:2054423-2055414 REVERSE LENGTH=992 Length=992 Score = 1007 bits (545), Expect = 0.0 Identities = 706/781 (90%), Gaps = 22/781 (3%) Strand=Plus/Plus Query 1 GAGATCAGAACCAATTCTCTGTTTATGGCGTCTCTGATCTCAGATATTGAACCGCCGAC- 59 ||||||||| |||||| | || ||||||||||||||||||||||||||||||||||||| Sbjct 79 GAGATCAGAGCCAATTATTTGGTTATGGCGTCTCTGATCTCAGATATTGAACCGCCGACG 138 Query 60 -G----A---CAGATCTCGTTCGGAGGAAGAAGAGATCCTCTGTC-TCCTCCGCCGCATC 110 | | |||||||||||||||| |||||||||||||||| | || ||||||||||| Sbjct 139 AGTACTACTTCAGATCTCGTTCGGAGAAAGAAGAGATCCTCTG-CTTCATCCGCCGCATC 197 Query 111 GTCTAGTACAACCGCAGGTTCCGTCTCCAGTGAGAGCCACGCGCGATGGAGATCGGAGAA 170 |||| || ||| |||| |||||||||| |||||| |||||||||||| |||||||||| Sbjct 198 GTCTCGTTCAAGCGCATCTTCCGTCTCCGGTGAGATTCACGCGCGATGGCGATCGGAGAA 257 Query 171 GCAACAACGGATCTACTCAGCCAAACTGATT-CAGGCGCTCCAACAAGTCCGCCTCAACT 229 |||||||||||||||||||||||||||| || || ||||||||||||||||||||||||| Sbjct 258 GCAACAACGGATCTACTCAGCCAAACTG-TTCCAAGCGCTCCAACAAGTCCGCCTCAACT 316 Query 230 CTTCCGCCGCGACATCATCATCTCCAACGGCTCAGAAACGAGGCAAA-GCCGTCCGTGAA 288 |||||||| | |||||||||||||||||||||||||||||||| ||| |||||||||||| Sbjct 317 CTTCCGCCTCAACATCATCATCTCCAACGGCTCAGAAACGAGG-AAAGGCCGTCCGTGAA 375 Query 289 GCCGCCGATCGAGCTCTCGCCGTTTCCGCTCGTGGAAGAACGCTCTGGAGCAGAGCGATC 348 ||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||| Sbjct 376 GCCGCCGATCGAGCTCTTGCCGTTTCCGCTCGGGGAAGAACACTCTGGAGCAGAGCGATC 435 Query 349 CTAGCTAATCGGATCAAACTGAAATTCCGTAAACAGAAACGGCCGAGAACTACGACGAAG 408 ||||||||||||||||||||||||| |||||||||| ||| || || |||||| | | Sbjct 436 TTAGCTAATCGGATCAAACTGAAATTTCGTAAACAGAGACGTCCTCGAGCTACGATGGCG 495 Query 409 ATTCCGTCCATGACCACGGTGG-T-G-AATAGCAGCAACAGATCGAGGAAACGAAGAGTG 465 |||||| ||||||| ||||||| | | | ||||||||||||||||| ||||| |||||| Sbjct 496 ATTCCGGCCATGACTACGGTGGTTAGTAGCAGCAGCAACAGATCGAGAAAACGGAGAGTG 555 Query 466 TCGGTGTTGAGATTGAATAAGAAGAATATACCGGATGTTAACCGGAAAGTACGTGTACTA 525 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| Sbjct 556 TCGGTGTTGAGATTGAATAAGAAGAGTATACCGGATGTTAACCGGAAAGTACGTGTTCTA 615 Query 526 GGCCGGTTAGTTCCCGGTTGTGGGAAACAATCCGTACCGGTGATTTTAGAAGAAGCAACT 585 |||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||| Sbjct 616 GGCCGGTTAGTTCCCGGTTGCGGTAAACAATCCGTACCGGTGATTCTAGAAGAAGCAACT 675 Query 586 GATTATATTCAGGCTCTGGAGATGCAGGTCAGAGCCATGAACTCTTTAGTTCAGCTTCTC 645 |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 676 GATTATATTCAGGCTCTGGAGATGCAAGTGAGAGCCATGAACTCTTTAGTTCAGCTTCTC 735 Query 646 TCCTCCTACGGCTCCGCTCCTCCACCGATTTGATGAGGTTAAAATCGTCTTTTAAATTCT 705 |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct 736 TCCTCCTACGGCTCAGCTCCTCCACCGATTTGATGAGGTTAAAATCGTCTTTTTAATTCT 795 Query 706 CCCATCA-TC-ATCTCTCTATCTTCTAATGTGTATATAGAAGATTCGGTTTGAGTATAAT 763 ||||| || |||| || | | || |||||||||||||||||||||||||| |||||| Sbjct 796 ACCATCTCTCGATCTTTC-A-CAGCTTATGTGTATATAGAAGATTCGGTTTGATTATAAT 853 Query 764 C 764 | Sbjct 854 C 854 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37123034633 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5