BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg477968

Length=515
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G06610.1 | Symbols:  | DNA-binding enhancer protein-related ...   830    0.0  


> AT3G06610.1 | Symbols:  | DNA-binding enhancer protein-related 
| chr3:2060737-2062067 FORWARD LENGTH=670
Length=670

 Score =  830 bits (449),  Expect = 0.0
 Identities = 495/517 (96%), Gaps = 4/517 (1%)
 Strand=Plus/Plus

Query  1    AGAGATAAGAGAA-AAGTTAGAAGCAATGGAGGGAGCAGAGGAAGCTGGGGCTGAGATAG  59
            ||||| ||||||| || || ||||||||||||||||||||||||||||||||||||||||
Sbjct  76   AGAGAGAAGAGAAGAAATT-GAAGCAATGGAGGGAGCAGAGGAAGCTGGGGCTGAGATAG  134

Query  60   CGGTTGATTCAAAGGACTTGCAGCAACAAAGCAAAGCTTTCGACAAGCTCACCGATCGTG  119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  135  CGGTTGATTCAAAGGACTTGCAGCAACAAAGCAAAGCTTTCGACAAGCTCACCGATCGTG  194

Query  120  TCGAGGATCGCCAGCTCGATTCCTCTCGTGTTCAATCGGCTATGGCTTCGATTGCTGCTT  179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  195  TCGAGGATCGCCAGCTCGATTCCTCTCGTGTTCAATCGGCTATGGCTTCGATTGCTGCTT  254

Query  180  CTAGGGAGGCTGATCTGAATGCTAAGAGGTTGAGGGAGAAAGAACTGGCCTCTGTGAAGA  239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  255  CTAGGGAGGCTGATCTGAATGCTAAGAGGTTGAGGGAGAAAGAACTGGCCTCTGTGAAGA  314

Query  240  TCAATCCTGCAGATGTTGAGTTTATTGTAAACGAACTCGAGATAGAAAAGAATGTGGCGG  299
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  315  TCAATCCTGCAGATGTTGAGTTTATTGTAAACGAACTTGAGATAGAAAAGAATGTGGCGG  374

Query  300  AAAGAACTCTAAGGGAGTACAATGGTGATGCGGTTGCTGCAACTAGGGAATTGCTTTCAC  359
            ||||||||||||||||| |||| ||||||||||||||||| |||||| ||||||||||||
Sbjct  375  AAAGAACTCTAAGGGAGCACAAAGGTGATGCGGTTGCTGCGACTAGGCAATTGCTTTCAC  434

Query  360  GATATCCTCTATGATGGACCAGGACTATT-TATTACTTCCAAGGTTTTTGGTTTGTTTAA  418
            |||||||||||||||||| |||||| ||| | ||||||||||||||||| || ||||| |
Sbjct  435  GATATCCTCTATGATGGAGCAGGACCATTCT-TTACTTCCAAGGTTTTTTGTATGTTTGA  493

Query  419  GAGGTTGAGAGCAAGTCTCCTAATACTTAACCGAGTTGAAATTGTCTATTGCTGAATCAA  478
            ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| | |
Sbjct  494  GAGGTTGAGAGCAAGTCTCCTAATATTTAACCGAGTTAAAATTGTCTATTGCTGAACCGA  553

Query  479  TCTCTCTGAGAAGCCCTGAATACAGATACAATAGATT  515
            ||||||||||||||||||||||||| |||||| ||||
Sbjct  554  TCTCTCTGAGAAGCCCTGAATACAGTTACAATCGATT  590



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24614732030


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5