BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477974 Length=2952 Score E Sequences producing significant alignments: (Bits) Value AT3G66652.1 | Symbols: | fip1 motif-containing protein | chr3:... 3458 0.0 > AT3G66652.1 | Symbols: | fip1 motif-containing protein | chr3:2083463-2087556 FORWARD LENGTH=3070 Length=3070 Score = 3458 bits (1872), Expect = 0.0 Identities = 2301/2502 (92%), Gaps = 53/2502 (2%) Strand=Plus/Plus Query 1 ATGGATTCTACTGATGATGATTTCGGTGACTTGTACGTTGATGATGCCAAGGTTCAGGCC 60 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 77 ATGGATTCTACTGATGATGATTTCGGTGACTTGTACGTTGATGATGCCAAGTTTCAGGCG 136 Query 61 AGTGATGCTTCCGCCGACGATGTAGGATTCGTAAAATCGTGCAAAGAATCGGAATGTGCT 120 | |||||||| ||| | | ||| | | |||| | ||| | | || Sbjct 137 ACTGATGCTT---TCGA--A--TCGGA---G-----T-GTGCTACGAA-C--TCCG-GCG 176 Query 121 ACGAATTCCAGCGATTTTGAAGGGACGGTAAAACCTGATTTGGAAGGTGAAATGAAGAAA 180 | | | | || | |||||||| ||||||||| |||||| |||||||||| |||||||| Sbjct 177 A-GGA-T-AAG-GGTTTTGAAGAGACGGTAAAGTCTGATTCGGAAGGTGAAGTGAAGAAA 232 Query 181 TTTGATGTTGTTGCTAAGGATTCGAGTCCGTGT---GACGACGATTGTGCTGTGAATCTG 237 ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| Sbjct 233 TTTGATGTTGTTGCTAAGGATTCGAGTCCGTGTGACGACGACGATTGTGCTATGAATCTG 292 Query 238 ACTGAGGCCGATGAAGAATCGGAATTTAGTGACAGTGATAGTGATGATGATTTGAATATA 297 |||||||||||||||||||||||| || | ||||||||||||||||||||||||||| Sbjct 293 ACTGAGGCCGATGAAGAATCGGAA-TT--T---AGTGATAGTGATGATGATTTGAATATA 346 Query 298 GTGCTCAAAGACGACGATTCTAAACCCCTTCCTGCTGCTTGTGTCTTTAACACCAACTAT 357 ||||||||||||||||| |||||| ||||||||||| ||||||| ||||||||||||| | Sbjct 347 GTGCTCAAAGACGACGACTCTAAAGCCCTTCCTGCTTCTTGTGTGTTTAACACCAACTTT 406 Query 358 ---GG---CG--G-ATCCAAAGCTTGCTCGTTTCAGAGACGGTGGACTAGAAACGCTTCA 408 || || | ||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 407 GGCGGATACGAAGCATCCAAAGCTTCCTCGTTTCAGAGACGGTGGACTAGAAACGCTTCA 466 Query 409 GCTAATAACGCTTGCATTGATCCGTCTTTAGGAATGCCTCAATATGGATATAGTTTCTCA 468 |||||||| |||||||| ||||| |||||||||||| ||||||| ||||||||||| || Sbjct 467 GCTAATAATGCTTGCATCGATCCTTCTTTAGGAATGTCTCAATACAGATATAGTTTCCCA 526 Query 469 AACCCTTGGTCCAGGACACCTTTTGACGTAAATTTCGATGTGTTTGAGAAGAAGCCATGG 528 |||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||| Sbjct 527 AACCCTTGGTCCAGGACACCTTTTGATGTAAATCTCGATGTGTTAGAGAAGAAGCCATGG 586 Query 529 AGGAATCCTGGTATGGATACTACTGACTTCTTTAATTTT-GGCTTGAACGAGCAAAGCTG 587 ||| ||||||||| |||||| | |||||| ||||||||| ||||| |||||||| ||||| Sbjct 587 AGGGATCCTGGTACGGATACCAGTGACTTTTTTAATTTTGGGCTT-AACGAGCAGAGCTG 645 Query 588 GAAAGATTACTGTAAACCGTTGGGAAGAGCAATTGAGGTTGGAGGTGGAACTCTTGAGCG 647 |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| Sbjct 646 GAAAGATTACTGTAAACCGTTGGGAAGAGCAATTGAGGTTAGAGGTGGTACTCTTGAGCG 705 Query 648 AATACCTTCTGCAGATTTGCGTCGTCCACGTGATTCAGACCCTGGCGTGGTGATACAGAT 707 |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| Sbjct 706 AATACCTTCTGCAGATTTGCGTCGTCCACGTGATCCTGACCCTGGCGTGGTGATACAGAT 765 Query 708 CCTTGTTACTAATGATGTTGAGGAGCTATCAATCATGACACCTGAGAGAGCAAGGTGCAT 767 || |||||||||||||||||||||||| || ||| ||||||||||| |||||| ||||| Sbjct 766 CCCAGTTACTAATGATGTTGAGGAGCTACCAGTCAGGACACCTGAGAAAGCAAGATGCAT 825 Query 768 AACATCAAATGAAGCATCTAGAAGTGACGATTCTCATTCAAATGACAGGAATGATTTGAA 827 ||||||||||||||||||||||||||||| |||||||||| ||| || || |||||||| Sbjct 826 AACATCAAATGAAGCATCTAGAAGTGACGTTTCTCATTCATATGGTAGCAAGGATTTGAA 885 Query 828 TTCAGTCGATGATTCTCCAAAAGATGAAGCTTTTGTGGGCTATCAAGaaaaaaaCGCTGC 887 ||||||| ||| ||||||||||||||||||||||||||| | ||||||| ||||||||| Sbjct 886 TTCAGTCTATGGTTCTCCAAAAGATGAAGCTTTTGTGGGGTGTCAAGAAGAAAACGCTGG 945 Query 888 AAGTTTCAGTGGCGAGAAATCTCCTCCAACAGAGAATTGCTGCAGTAGGGAAGTGACACC 947 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 946 AAGTTTCAGTGGCGAGAAATCTCTTCCAACAGAGAATTGCTGCAGTAGGGAAGCAACACC 1005 Query 948 TAGTGATAAGGAAATGCTTGAGGAGGAGAAAGTAGAGAGTTTTTGCAATTCTGATGAGAC 1007 |||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||| Sbjct 1006 TAGTGATAAGGAAATGCTTGAGAAGGAGAAAGAAGAGAGTGTTTGCAATTCTGATGAGAC 1065 Query 1008 GGATCCATCCTCAGTGGAGAGGGAATCATCTCTTGGAGATCGCATTCGTTTGAGCCCTAC 1067 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1066 GGATCCATCCTCAGTGGAGAGGGAATCATCTCTTGGAGATCGCATTCGTTTGAGCCCTAC 1125 Query 1068 CTCTTCTTGCT-CTGCTGGTAAAAATGAGGAATCTGATGATTATGAAACAGAGTCATTGA 1126 |||||||| || ||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1126 CTCTTCTT-CTTCTGTTGGTATAAATGAGGAATCTGATGATTATGAAACAGAGTCATTGA 1184 Query 1127 AAGACAGTGCTACTGATGACCAACGTGAAGTCAGTACCCCACCACAACAAGCTAGACTTG 1186 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1185 AAGACAGTGCTACTGATGACCAACGTGAAGTCAGTACCCCACCACAAGAAGCTAGACTTG 1244 Query 1187 CAGAACATGAAGCAATTAGTATCAAAAGAGGGGGAA-ATAGTGGTACAATGCATTCTAGA 1245 ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 1245 CAGAACATGAAGCAATTAGTATCAAAAGAGGGG-AAGATAGTGGTACAATGCATTCTAGA 1303 Query 1246 CCCAGAAGATCTCACGAAGATTCAAGCAAAAGGCACTGTGGGAGAGCTGGCTATGCTGGC 1305 | |||||||||||||||||| || |||||||||||||||||||||||||| |||||| || Sbjct 1304 CACAGAAGATCTCACGAAGACTCCAGCAAAAGGCACTGTGGGAGAGCTGGTTATGCTCGC 1363 Query 1306 TATGTTAAGGATGCATCGCCTACACCAGATCCTGGTCGTGGCAAGAAAGTTCGTTCTCGA 1365 ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| | Sbjct 1364 TATGTTAAGGATGCATCGCCTACACCAGATCCTGGTCGTGGGAAGAAAGTTGGTTCTCTA 1423 Query 1366 CATGGAAGTTTGTATCGTGATTCAAACAAAAACTGGCAGAATGGACCACGTCTTACATTA 1425 || || | |||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 1424 CA-GG--GCTTGTATCGTGATTCAAACAAAAACTGGCAGAATGGACCACCTATTACATTA 1480 Query 1426 GAAAGGGATGAAACTGAAGGTAAAGGCGTTCATTACTGTAGAGAAAATTGTCATGGTAGA 1485 || |||||||||||||||||||||||||||||||||| ||||||||| | |||||||||| Sbjct 1481 GAGAGGGATGAAACTGAAGGTAAAGGCGTTCATTACTATAGAGAAAAATCTCATGGTAGA 1540 Query 1486 TTGTATTCATCTGTGGATCATGCTAAGCATAGAAAGCACAGGTTTGGTTGGCGCAACATC 1545 ||| |||||||||||||||||| || ||||||| ||||||||||||||||||| |||| | Sbjct 1541 TTGAATTCATCTGTGGATCATGATAGGCATAGAGAGCACAGGTTTGGTTGGCGGAACAAC 1600 Query 1546 AAAGAATCATCACTGGGTCGAGGTTTTGATCATTCTAATAGTTACAAGTGTGGGGCGCAT 1605 |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1601 AAAGAATCATCACTCGGTCGAGGTTTTGATCATTCTAATAGTTACAAGTGTGGGACGCAT 1660 Query 1606 CCTAAAGAGTATACCTCACGTTCATCCTTCGGTCTTAATCAGAGAAATTCTAGATCAAGT 1665 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1661 CTTAAAGAGTATACCTCACGTTCATCCTTCGATCTTAATCAGAGAAATTCTAGATCAAGT 1720 Query 1666 TTTAAAGAAGAGGATGATCGATATGGTTGGCATCATTGTGAAAGAAAATATGGTCATGAA 1725 |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| Sbjct 1721 TTTAAAGAAGAGGATGATCGATATGGTTGGCATCATCGTGAAAGAAAATATGTTCATGAA 1780 Query 1726 AGAAGTCCTGTCCGAGCCTACGAAAACTACAAAGAAAGAAATGGGTGCAATAGGCTAAGA 1785 ||||||||| ||||||| || |||||||||||||||||||||||||| || |||||||| Sbjct 1781 AGAAGTCCTATCCGAGCATATGAAAACTACAAAGAAAGAAATGGGTGTGATTGGCTAAGA 1840 Query 1786 GAACCTTATTATGAGGACTGTATACCGATTACTGACATGGATTATAGGTACCGGTCAGAT 1845 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1841 GAACCTTATTATGAGGACTGTATACCGATTACTGACATGGATTATAGGTACCGGTCAGAG 1900 Query 1846 TACACTTCTGCACATGCAATACACAACCTCAATCAGAGTCCAGAGAATGATCTTTATTGC 1905 || | |||||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 1901 AACTCGTCTGCACATGCAATACACAACCTCAAGCACAGTCCAGAGAATGATCTTTATTGC 1960 Query 1906 AGAAGAAGGGGTGGATACGATTCTAATTTGCATCGCCATAGATATGAAGATGTAGTTCAC 1965 |||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||| Sbjct 1961 AGAAGAAGGGGTGGATACGATTATAATTTGCATCGTGATAGATATGAAGATGGAGTTCAC 2020 Query 1966 AGGGCAGAAAGTAGAATTCCATTTGAGCTGGCTTACAGGGAGGTGTGTTCTTTTGCTGAA 2025 |||| ||||||||||||||||||||||||||| ||||||||| || |||||||||||||| Sbjct 2021 AGGGTAGAAAGTAGAATTCCATTTGAGCTGGCGTACAGGGAGATGCGTTCTTTTGCTGAA 2080 Query 2026 GTGGAAATGAGAGAATATCAAGGGTATAAAAGGCATGAGGAATTCTCTGAAATAGAGAAA 2085 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 2081 GTGGAAATGAGAGAATATCAAGGGTATAAAAGACATGAGGAATTCTCTGAAATAGAGAAA 2140 Query 2086 AGACGCCATTACACTCATGATTGGAATCTTGATAGATTTGTCTCAGAGAAAGATGATTGT 2145 |||| ||||||| |||||||||| ||||||||||||||||||||||| |||||| || | Sbjct 2141 AGACATCATTACATTCATGATTGGCATCTTGATAGATTTGTCTCAGAGGAAGATGGTTAT 2200 Query 2146 AAGTATAGAACCCAAGATGATTGGTCCTCACCGTCTTTATCTTTGAGAGATTCTTGGTAT 2205 |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 2201 AAGTATAGAATCCAAGATGGTTGGTCCTCACCGTCTTTATCTTTGAGAGATTCTTGGTAT 2260 Query 2206 ACCAAAGAAGCAAAAGGTGATTTCTGGAGAGATGATGCTAGAGACTTTAGAACAGCTGAA 2265 |||||||||||||||||||||||| ||||||||||| | |||||||| |||||| ||||| Sbjct 2261 ACCAAAGAAGCAAAAGGTGATTTCCGGAGAGATGATACCAGAGACTTCAGAACACCTGAA 2320 Query 2266 GCATATGACAACCAGAATAACCAGTTTCATAAGGCTGCACCGAGAGATGG-TCGGACGCA 2324 |||||||||| |||||||||||| |||||||||||||||||||||||||| | ||||||| Sbjct 2321 GCATATGACAGCCAGAATAACCATTTTCATAAGGCTGCACCGAGAGATGGCT-GGACGCA 2379 Query 2325 GAATCTTGGTCGTAGCAATAATGTGAGCATAAAAGATAGACTAAAGGATGATGATGATTG 2384 |||||||||||||||| ||||||||||| |||||||||||||| || |||||| |||||| Sbjct 2380 GAATCTTGGTCGTAGCCATAATGTGAGCGTAAAAGATAGACTACAGTATGATGCTGATTG 2439 Query 2385 GGTTTGTCCTGATAGAGGAAGATATAATACGGCAGATGACATTCAATGTTCAATGAGAGA 2444 |||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 2440 GGTTGGTCCTGATAGAGGAAGATATAATATGGCAGATGACATGCAATGTTCAATGAGAGA 2499 Query 2445 AGTTACTTATTCTGAGCATCCATCATATACTGATGAGATATT 2486 |||| || |||||||||||||||||||||||||||||||||| Sbjct 2500 AGTTTCTAATTCTGAGCATCCATCATATACTGATGAGATATT 2541 Score = 544 bits (294), Expect = 2e-153 Identities = 420/475 (88%), Gaps = 31/475 (7%) Strand=Plus/Plus Query 2491 CATATTCGTGAAAATGATGAGAGACATCACAAATCCAAGAAGCTGAGAGGAGATGGGAAT 2550 ||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||| || Sbjct 2612 CATATTCATGAAAATGATGAAAGACATCACAGATCCAAGAAGCTGAGAGGAGATGGGCAT 2671 Query 2551 TCTTTCATCAAGCGTCAGGATCCA-GTTGACTTAGCTGGTAGGCAAGGAAAGCG-CTCAA 2608 |||||||||||||||||||| || ||||||||||||||||||||||||||| | ||| | Sbjct 2672 GCTTTCATCAAGCGTCAGGAT-CATGTTGACTTAGCTGGTAGGCAAGGAAAG-GTCTCTA 2729 Query 2609 ACCAATCAAACAAAAGATTCTCCAAT----G-G-------CGAGCAACAAGATCTTCAAA 2656 |||||||||| ||||||||||||||| | | ||||||||||||| |||| | Sbjct 2730 ACCAATCAAAAAAAAGATTCTCCAATGGCGGAGATACAATCGAGCAACAAGATGTTCAGA 2789 Query 2657 AACCAAGAAAGTTAGTGGGCAAAAGCGAAGAGAAAGCTATGCAGACTCGAGATATAAATG 2716 |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| Sbjct 2790 AACCAAGAAAGTTAATGGGCAAAAGCGAAGAGAAAGCTATGCAGAATCGAGATATAAATG 2849 Query 2717 ACAAAGAAGAAGGCGAGATCATAGAAGAAGCGACGAACGTGAAAGGTGTTGAAATAGACA 2776 ||||||||||||||||||| | | || | | ||| |||||||||||||||||||||| Sbjct 2850 ACAAAGAAGAAGGCGAGAT-A-A-TAG-A---A-GAA-GTGAAAGGTGTTGAAATAGACA 2900 Query 2777 ATGAGCGTATACAAGAGAGCCTGAAGAAGATGGAGAAACGGAGGGAGAGGTTCAAGGGAA 2836 |||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 2901 ATGAACGTATACAAGAGAGTCTGAAAAAGATGGAGAAACGGAGGGAGAGGTTCAAGGGAA 2960 Query 2837 CCAAAATGGCGAGGACGGTAGAAGCCACATTCAAATCTGAAACCGAAAGGAGAGCTAAAA 2896 ||||| ||||| | ||||||| |||||||||||| |||| ||| |||||||||| Sbjct 2961 CCAAATTGGCG-G-----TAGAAGCGACATTCAAATCTCAAACTGAACTGAGAGCTAAAG 3014 Query 2897 CCGATGTTACTAATCAACAGAGACCGGTTAGAAAGAGGAGATGGTGTGCAAGTTA 2951 |||||||||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct 3015 CCGATGTTACTAATCAACAGAGGCCAGTTAGAAAGAGGAGATGGTGTGCAAGTTA 3069 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 146738308275 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5