BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477974
Length=2952
Score E
Sequences producing significant alignments: (Bits) Value
AT3G66652.1 | Symbols: | fip1 motif-containing protein | chr3:... 3458 0.0
> AT3G66652.1 | Symbols: | fip1 motif-containing protein | chr3:2083463-2087556
FORWARD LENGTH=3070
Length=3070
Score = 3458 bits (1872), Expect = 0.0
Identities = 2301/2502 (92%), Gaps = 53/2502 (2%)
Strand=Plus/Plus
Query 1 ATGGATTCTACTGATGATGATTTCGGTGACTTGTACGTTGATGATGCCAAGGTTCAGGCC 60
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 77 ATGGATTCTACTGATGATGATTTCGGTGACTTGTACGTTGATGATGCCAAGTTTCAGGCG 136
Query 61 AGTGATGCTTCCGCCGACGATGTAGGATTCGTAAAATCGTGCAAAGAATCGGAATGTGCT 120
| |||||||| ||| | | ||| | | |||| | ||| | | ||
Sbjct 137 ACTGATGCTT---TCGA--A--TCGGA---G-----T-GTGCTACGAA-C--TCCG-GCG 176
Query 121 ACGAATTCCAGCGATTTTGAAGGGACGGTAAAACCTGATTTGGAAGGTGAAATGAAGAAA 180
| | | | || | |||||||| ||||||||| |||||| |||||||||| ||||||||
Sbjct 177 A-GGA-T-AAG-GGTTTTGAAGAGACGGTAAAGTCTGATTCGGAAGGTGAAGTGAAGAAA 232
Query 181 TTTGATGTTGTTGCTAAGGATTCGAGTCCGTGT---GACGACGATTGTGCTGTGAATCTG 237
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 233 TTTGATGTTGTTGCTAAGGATTCGAGTCCGTGTGACGACGACGATTGTGCTATGAATCTG 292
Query 238 ACTGAGGCCGATGAAGAATCGGAATTTAGTGACAGTGATAGTGATGATGATTTGAATATA 297
|||||||||||||||||||||||| || | |||||||||||||||||||||||||||
Sbjct 293 ACTGAGGCCGATGAAGAATCGGAA-TT--T---AGTGATAGTGATGATGATTTGAATATA 346
Query 298 GTGCTCAAAGACGACGATTCTAAACCCCTTCCTGCTGCTTGTGTCTTTAACACCAACTAT 357
||||||||||||||||| |||||| ||||||||||| ||||||| ||||||||||||| |
Sbjct 347 GTGCTCAAAGACGACGACTCTAAAGCCCTTCCTGCTTCTTGTGTGTTTAACACCAACTTT 406
Query 358 ---GG---CG--G-ATCCAAAGCTTGCTCGTTTCAGAGACGGTGGACTAGAAACGCTTCA 408
|| || | ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 407 GGCGGATACGAAGCATCCAAAGCTTCCTCGTTTCAGAGACGGTGGACTAGAAACGCTTCA 466
Query 409 GCTAATAACGCTTGCATTGATCCGTCTTTAGGAATGCCTCAATATGGATATAGTTTCTCA 468
|||||||| |||||||| ||||| |||||||||||| ||||||| ||||||||||| ||
Sbjct 467 GCTAATAATGCTTGCATCGATCCTTCTTTAGGAATGTCTCAATACAGATATAGTTTCCCA 526
Query 469 AACCCTTGGTCCAGGACACCTTTTGACGTAAATTTCGATGTGTTTGAGAAGAAGCCATGG 528
|||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||
Sbjct 527 AACCCTTGGTCCAGGACACCTTTTGATGTAAATCTCGATGTGTTAGAGAAGAAGCCATGG 586
Query 529 AGGAATCCTGGTATGGATACTACTGACTTCTTTAATTTT-GGCTTGAACGAGCAAAGCTG 587
||| ||||||||| |||||| | |||||| ||||||||| ||||| |||||||| |||||
Sbjct 587 AGGGATCCTGGTACGGATACCAGTGACTTTTTTAATTTTGGGCTT-AACGAGCAGAGCTG 645
Query 588 GAAAGATTACTGTAAACCGTTGGGAAGAGCAATTGAGGTTGGAGGTGGAACTCTTGAGCG 647
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 646 GAAAGATTACTGTAAACCGTTGGGAAGAGCAATTGAGGTTAGAGGTGGTACTCTTGAGCG 705
Query 648 AATACCTTCTGCAGATTTGCGTCGTCCACGTGATTCAGACCCTGGCGTGGTGATACAGAT 707
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 706 AATACCTTCTGCAGATTTGCGTCGTCCACGTGATCCTGACCCTGGCGTGGTGATACAGAT 765
Query 708 CCTTGTTACTAATGATGTTGAGGAGCTATCAATCATGACACCTGAGAGAGCAAGGTGCAT 767
|| |||||||||||||||||||||||| || ||| ||||||||||| |||||| |||||
Sbjct 766 CCCAGTTACTAATGATGTTGAGGAGCTACCAGTCAGGACACCTGAGAAAGCAAGATGCAT 825
Query 768 AACATCAAATGAAGCATCTAGAAGTGACGATTCTCATTCAAATGACAGGAATGATTTGAA 827
||||||||||||||||||||||||||||| |||||||||| ||| || || ||||||||
Sbjct 826 AACATCAAATGAAGCATCTAGAAGTGACGTTTCTCATTCATATGGTAGCAAGGATTTGAA 885
Query 828 TTCAGTCGATGATTCTCCAAAAGATGAAGCTTTTGTGGGCTATCAAGaaaaaaaCGCTGC 887
||||||| ||| ||||||||||||||||||||||||||| | ||||||| |||||||||
Sbjct 886 TTCAGTCTATGGTTCTCCAAAAGATGAAGCTTTTGTGGGGTGTCAAGAAGAAAACGCTGG 945
Query 888 AAGTTTCAGTGGCGAGAAATCTCCTCCAACAGAGAATTGCTGCAGTAGGGAAGTGACACC 947
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 946 AAGTTTCAGTGGCGAGAAATCTCTTCCAACAGAGAATTGCTGCAGTAGGGAAGCAACACC 1005
Query 948 TAGTGATAAGGAAATGCTTGAGGAGGAGAAAGTAGAGAGTTTTTGCAATTCTGATGAGAC 1007
|||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||
Sbjct 1006 TAGTGATAAGGAAATGCTTGAGAAGGAGAAAGAAGAGAGTGTTTGCAATTCTGATGAGAC 1065
Query 1008 GGATCCATCCTCAGTGGAGAGGGAATCATCTCTTGGAGATCGCATTCGTTTGAGCCCTAC 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 GGATCCATCCTCAGTGGAGAGGGAATCATCTCTTGGAGATCGCATTCGTTTGAGCCCTAC 1125
Query 1068 CTCTTCTTGCT-CTGCTGGTAAAAATGAGGAATCTGATGATTATGAAACAGAGTCATTGA 1126
|||||||| || ||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1126 CTCTTCTT-CTTCTGTTGGTATAAATGAGGAATCTGATGATTATGAAACAGAGTCATTGA 1184
Query 1127 AAGACAGTGCTACTGATGACCAACGTGAAGTCAGTACCCCACCACAACAAGCTAGACTTG 1186
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1185 AAGACAGTGCTACTGATGACCAACGTGAAGTCAGTACCCCACCACAAGAAGCTAGACTTG 1244
Query 1187 CAGAACATGAAGCAATTAGTATCAAAAGAGGGGGAA-ATAGTGGTACAATGCATTCTAGA 1245
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1245 CAGAACATGAAGCAATTAGTATCAAAAGAGGGG-AAGATAGTGGTACAATGCATTCTAGA 1303
Query 1246 CCCAGAAGATCTCACGAAGATTCAAGCAAAAGGCACTGTGGGAGAGCTGGCTATGCTGGC 1305
| |||||||||||||||||| || |||||||||||||||||||||||||| |||||| ||
Sbjct 1304 CACAGAAGATCTCACGAAGACTCCAGCAAAAGGCACTGTGGGAGAGCTGGTTATGCTCGC 1363
Query 1306 TATGTTAAGGATGCATCGCCTACACCAGATCCTGGTCGTGGCAAGAAAGTTCGTTCTCGA 1365
||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
Sbjct 1364 TATGTTAAGGATGCATCGCCTACACCAGATCCTGGTCGTGGGAAGAAAGTTGGTTCTCTA 1423
Query 1366 CATGGAAGTTTGTATCGTGATTCAAACAAAAACTGGCAGAATGGACCACGTCTTACATTA 1425
|| || | |||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1424 CA-GG--GCTTGTATCGTGATTCAAACAAAAACTGGCAGAATGGACCACCTATTACATTA 1480
Query 1426 GAAAGGGATGAAACTGAAGGTAAAGGCGTTCATTACTGTAGAGAAAATTGTCATGGTAGA 1485
|| |||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||
Sbjct 1481 GAGAGGGATGAAACTGAAGGTAAAGGCGTTCATTACTATAGAGAAAAATCTCATGGTAGA 1540
Query 1486 TTGTATTCATCTGTGGATCATGCTAAGCATAGAAAGCACAGGTTTGGTTGGCGCAACATC 1545
||| |||||||||||||||||| || ||||||| ||||||||||||||||||| |||| |
Sbjct 1541 TTGAATTCATCTGTGGATCATGATAGGCATAGAGAGCACAGGTTTGGTTGGCGGAACAAC 1600
Query 1546 AAAGAATCATCACTGGGTCGAGGTTTTGATCATTCTAATAGTTACAAGTGTGGGGCGCAT 1605
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1601 AAAGAATCATCACTCGGTCGAGGTTTTGATCATTCTAATAGTTACAAGTGTGGGACGCAT 1660
Query 1606 CCTAAAGAGTATACCTCACGTTCATCCTTCGGTCTTAATCAGAGAAATTCTAGATCAAGT 1665
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1661 CTTAAAGAGTATACCTCACGTTCATCCTTCGATCTTAATCAGAGAAATTCTAGATCAAGT 1720
Query 1666 TTTAAAGAAGAGGATGATCGATATGGTTGGCATCATTGTGAAAGAAAATATGGTCATGAA 1725
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1721 TTTAAAGAAGAGGATGATCGATATGGTTGGCATCATCGTGAAAGAAAATATGTTCATGAA 1780
Query 1726 AGAAGTCCTGTCCGAGCCTACGAAAACTACAAAGAAAGAAATGGGTGCAATAGGCTAAGA 1785
||||||||| ||||||| || |||||||||||||||||||||||||| || ||||||||
Sbjct 1781 AGAAGTCCTATCCGAGCATATGAAAACTACAAAGAAAGAAATGGGTGTGATTGGCTAAGA 1840
Query 1786 GAACCTTATTATGAGGACTGTATACCGATTACTGACATGGATTATAGGTACCGGTCAGAT 1845
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1841 GAACCTTATTATGAGGACTGTATACCGATTACTGACATGGATTATAGGTACCGGTCAGAG 1900
Query 1846 TACACTTCTGCACATGCAATACACAACCTCAATCAGAGTCCAGAGAATGATCTTTATTGC 1905
|| | |||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1901 AACTCGTCTGCACATGCAATACACAACCTCAAGCACAGTCCAGAGAATGATCTTTATTGC 1960
Query 1906 AGAAGAAGGGGTGGATACGATTCTAATTTGCATCGCCATAGATATGAAGATGTAGTTCAC 1965
|||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||
Sbjct 1961 AGAAGAAGGGGTGGATACGATTATAATTTGCATCGTGATAGATATGAAGATGGAGTTCAC 2020
Query 1966 AGGGCAGAAAGTAGAATTCCATTTGAGCTGGCTTACAGGGAGGTGTGTTCTTTTGCTGAA 2025
|||| ||||||||||||||||||||||||||| ||||||||| || ||||||||||||||
Sbjct 2021 AGGGTAGAAAGTAGAATTCCATTTGAGCTGGCGTACAGGGAGATGCGTTCTTTTGCTGAA 2080
Query 2026 GTGGAAATGAGAGAATATCAAGGGTATAAAAGGCATGAGGAATTCTCTGAAATAGAGAAA 2085
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2081 GTGGAAATGAGAGAATATCAAGGGTATAAAAGACATGAGGAATTCTCTGAAATAGAGAAA 2140
Query 2086 AGACGCCATTACACTCATGATTGGAATCTTGATAGATTTGTCTCAGAGAAAGATGATTGT 2145
|||| ||||||| |||||||||| ||||||||||||||||||||||| |||||| || |
Sbjct 2141 AGACATCATTACATTCATGATTGGCATCTTGATAGATTTGTCTCAGAGGAAGATGGTTAT 2200
Query 2146 AAGTATAGAACCCAAGATGATTGGTCCTCACCGTCTTTATCTTTGAGAGATTCTTGGTAT 2205
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2201 AAGTATAGAATCCAAGATGGTTGGTCCTCACCGTCTTTATCTTTGAGAGATTCTTGGTAT 2260
Query 2206 ACCAAAGAAGCAAAAGGTGATTTCTGGAGAGATGATGCTAGAGACTTTAGAACAGCTGAA 2265
|||||||||||||||||||||||| ||||||||||| | |||||||| |||||| |||||
Sbjct 2261 ACCAAAGAAGCAAAAGGTGATTTCCGGAGAGATGATACCAGAGACTTCAGAACACCTGAA 2320
Query 2266 GCATATGACAACCAGAATAACCAGTTTCATAAGGCTGCACCGAGAGATGG-TCGGACGCA 2324
|||||||||| |||||||||||| |||||||||||||||||||||||||| | |||||||
Sbjct 2321 GCATATGACAGCCAGAATAACCATTTTCATAAGGCTGCACCGAGAGATGGCT-GGACGCA 2379
Query 2325 GAATCTTGGTCGTAGCAATAATGTGAGCATAAAAGATAGACTAAAGGATGATGATGATTG 2384
|||||||||||||||| ||||||||||| |||||||||||||| || |||||| ||||||
Sbjct 2380 GAATCTTGGTCGTAGCCATAATGTGAGCGTAAAAGATAGACTACAGTATGATGCTGATTG 2439
Query 2385 GGTTTGTCCTGATAGAGGAAGATATAATACGGCAGATGACATTCAATGTTCAATGAGAGA 2444
|||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 2440 GGTTGGTCCTGATAGAGGAAGATATAATATGGCAGATGACATGCAATGTTCAATGAGAGA 2499
Query 2445 AGTTACTTATTCTGAGCATCCATCATATACTGATGAGATATT 2486
|||| || ||||||||||||||||||||||||||||||||||
Sbjct 2500 AGTTTCTAATTCTGAGCATCCATCATATACTGATGAGATATT 2541
Score = 544 bits (294), Expect = 2e-153
Identities = 420/475 (88%), Gaps = 31/475 (7%)
Strand=Plus/Plus
Query 2491 CATATTCGTGAAAATGATGAGAGACATCACAAATCCAAGAAGCTGAGAGGAGATGGGAAT 2550
||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||| ||
Sbjct 2612 CATATTCATGAAAATGATGAAAGACATCACAGATCCAAGAAGCTGAGAGGAGATGGGCAT 2671
Query 2551 TCTTTCATCAAGCGTCAGGATCCA-GTTGACTTAGCTGGTAGGCAAGGAAAGCG-CTCAA 2608
|||||||||||||||||||| || ||||||||||||||||||||||||||| | ||| |
Sbjct 2672 GCTTTCATCAAGCGTCAGGAT-CATGTTGACTTAGCTGGTAGGCAAGGAAAG-GTCTCTA 2729
Query 2609 ACCAATCAAACAAAAGATTCTCCAAT----G-G-------CGAGCAACAAGATCTTCAAA 2656
|||||||||| ||||||||||||||| | | ||||||||||||| |||| |
Sbjct 2730 ACCAATCAAAAAAAAGATTCTCCAATGGCGGAGATACAATCGAGCAACAAGATGTTCAGA 2789
Query 2657 AACCAAGAAAGTTAGTGGGCAAAAGCGAAGAGAAAGCTATGCAGACTCGAGATATAAATG 2716
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2790 AACCAAGAAAGTTAATGGGCAAAAGCGAAGAGAAAGCTATGCAGAATCGAGATATAAATG 2849
Query 2717 ACAAAGAAGAAGGCGAGATCATAGAAGAAGCGACGAACGTGAAAGGTGTTGAAATAGACA 2776
||||||||||||||||||| | | || | | ||| ||||||||||||||||||||||
Sbjct 2850 ACAAAGAAGAAGGCGAGAT-A-A-TAG-A---A-GAA-GTGAAAGGTGTTGAAATAGACA 2900
Query 2777 ATGAGCGTATACAAGAGAGCCTGAAGAAGATGGAGAAACGGAGGGAGAGGTTCAAGGGAA 2836
|||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 2901 ATGAACGTATACAAGAGAGTCTGAAAAAGATGGAGAAACGGAGGGAGAGGTTCAAGGGAA 2960
Query 2837 CCAAAATGGCGAGGACGGTAGAAGCCACATTCAAATCTGAAACCGAAAGGAGAGCTAAAA 2896
||||| ||||| | ||||||| |||||||||||| |||| ||| ||||||||||
Sbjct 2961 CCAAATTGGCG-G-----TAGAAGCGACATTCAAATCTCAAACTGAACTGAGAGCTAAAG 3014
Query 2897 CCGATGTTACTAATCAACAGAGACCGGTTAGAAAGAGGAGATGGTGTGCAAGTTA 2951
|||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 3015 CCGATGTTACTAATCAACAGAGGCCAGTTAGAAAGAGGAGATGGTGTGCAAGTTA 3069
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 146738308275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5