BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477975
Length=1402
Score E
Sequences producing significant alignments: (Bits) Value
AT3G66654.1 | Symbols: | Cyclophilin-like peptidyl-prolyl cis-... 1478 0.0
> AT3G66654.1 | Symbols: | Cyclophilin-like peptidyl-prolyl cis-trans
isomerase family protein | chr3:2088068-2090481 FORWARD
LENGTH=1056
Length=1056
Score = 1478 bits (800), Expect = 0.0
Identities = 901/948 (95%), Gaps = 14/948 (1%)
Strand=Plus/Plus
Query 462 GAGACAAGTTGTATTCGTCGTTTG----CTGCAGAAAATAAGGT-CAAATGGCGAAGATA 516
|||||||||||||| | ||||||| |||| |||| |||||| | |||||||||||||
Sbjct 116 GAGACAAGTTGTATCCCTCGTTTGCTTTCTGC-GAAACTAAGGTGC-AATGGCGAAGATA 173
Query 517 AAACCTCAGGCTCTTCTAAATCAAAGCAAGAAGAAGAAGGGTCCAAGTCGCATAAGTATT 576
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 AAACCGCAGGCTCTTCTAAATCAAAGCAAGAAGAAGAAGGGTCCAAGTCGCATAAGTATT 233
Query 577 TCCACTATTATCGTCTGTAATCTTGTAGTTGCTGTAGTCATACTATCCTTGGTCACTACT 636
||||||||||| |||||||||||||||||||||||||||||| |||| |||||||| ||
Sbjct 234 TCCACTATTATTGTCTGTAATCTTGTAGTTGCTGTAGTCATATTATCGTTGGTCACAACC 293
Query 637 TATCGCCATTGGTCCCAAAGGTCAAGAAACACAATTGAACATGAAACTCAGAGTCAGAGA 696
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 294 TATCGCCATTGGTCCCAAAGGTCAAGAAACACAATTGAACATGAAACTCGGAGTCAGAGA 353
Query 697 TTTGAGGACACAAATACTGCATCAGAGCAAAAAACTTACGACCTTCCTGGTTATGCTGAT 756
||||||||||| |||||||| |||| ||||||||||||||| |||||||||| |||||||
Sbjct 354 TTTGAGGACACTAATACTGCGTCAGGGCAAAAAACTTACGATCTTCCTGGTTTTGCTGAT 413
Query 757 ATAAACACATCAAAAGGACTTATAACTGTCGAACTCTTCAAAGAAGGTTCCCCTGAAGTT 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 ATAAACACATCAAAAGGACTTATAACTGTCGAACTCTTCAAAGAAGGTTCCCCTGAAGTT 473
Query 817 GTGGACAAGTTTCTAGATCTATGTCAAAAAGATCACTTCAAGGGAATGCCGTTTCATCGG 876
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 474 GTGGACAAGTTTCTAGATCTATGTCAAAAAGATCACTTCAAGGGAATGCCGTTTCAGCGG 533
Query 877 GTTATAAAAAACTACTTGGTACAAGCTGGTCACTCACCGAGCTCTATACCTGTAGAAGAA 936
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 GTTATAAAGAACTACTTGGTACAAGCTGGTCACTCACCGAGCTCTATACCTGTAGAAGAA 593
Query 937 TGGACAGCTAAAGGAAAGCTCCGTGGTCGCCTTCACATAGGCCCAAAACATGAGGCATTC 996
||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||
Sbjct 594 TGGACAGCTAAAGGAAAGCTCAGAGGTCGCCTTCACATTGGCCCAAAACATGAGGCATTC 653
Query 997 ATGTTGGGAACACCAAAAAACAAAGGGAACAACAAGGATTTTGAGCTTCTGATCACAACG 1056
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 ATGTTGGGAACACCAAAAAACAAAGGGAACAACAAGGATTTTGAGCTTCTGATCACAACG 713
Query 1057 GCGCCAATCCCGGATCTGAATGATCAGCTTATAGTGTTTGGAAGAGTCCTTAAGGGAGAG 1116
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 714 GCCCCAATCCCGGATCTGAATGATCAACTTATAGTGTTTGGAAGAGTCCTTAAGGGAGAG 773
Query 1117 GATGTAGTACAGGAGATCGAAGAAGTGGATACGGATGAGCATTACCAACCGAAATCGCCA 1176
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 774 GATGTAGTACAGGAGATCGAAGAAGTGGATACGGATGAGCATTTCCAACCGAAATCGCCA 833
Query 1177 ATAGGGATCACTGGTGTTGTACTGAAACGAGAGATATGAAATGAAAATCTCTCTTCCTTC 1236
|||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||
Sbjct 834 ATAGGGATCACTGGTGTTGTACTGAAACTAGAGACATGAAATGAAAATTTCTCTTCCTT- 892
Query 1237 GTTGTTTCCTCTGTAAATGAGGCTCACGCCAAGTCTTTCTTCATACTCACTGTTT-GTAT 1295
| | | ||||||||||||||||||||||||| || |||||||||||| || ||| ||||
Sbjct 893 GCT-T--CCTCTGTAAATGAGGCTCACGCCAAATCCTTCTTCATACTCGCTCTTTTGTAT 949
Query 1296 AAACCCTCttttgaggtttttttttctctttctattttacagtttcttgttgttttgtaa 1355
||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 950 AAATCCTCTTTTGAGGTTTTTTCTT-TCTTTCTATTTTACAGTTTCTTGTTGTTTTGTAA 1008
Query 1356 tttt-tttgatttttctCGAGGAAATAGAATCTTTGTTTAATTATGCT 1402
|||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 TTTTATTTGATTTTTCTCGAGGAAATAGAATCTTTGTTTAATTATGCT 1056
Score = 167 bits (90), Expect = 3e-40
Identities = 114/124 (92%), Gaps = 8/124 (6%)
Strand=Plus/Plus
Query 54 CACGCGGCTGATCTGAAGCGTCGTCTCTGTGCAAAAGAGAAAAGGGAGCAGAGAATTCAA 113
||||||||||||||||| | |||||| ||||||||||||||| |||||||||||||||
Sbjct 1 CACGCGGCTGATCTGAA--G-CGTCTC--TGCAAAAGAGAAAAGAGAGCAGAGAATTCAA 55
Query 114 ACCAGTTTCCATCGACGAAACGACCAATCTCCACGATTCCTCTCTTCTTTCTTCTAACTT 173
||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||
Sbjct 56 ACCAGTTTCCATCGACGCAACGACCAATCTCCACGATTCCTCTCTTCT--CT-CTAACTT 112
Query 174 CCAG 177
||||
Sbjct 113 CCAG 116
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69075949920
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5