BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg477978

Length=516
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G66656.1 | Symbols: AGL91 | AGAMOUS-like 91 | chr3:2091262-2...   787    0.0  


> AT3G66656.1 | Symbols: AGL91 | AGAMOUS-like 91 | chr3:2091262-2091798 
REVERSE LENGTH=537
Length=537

 Score =  787 bits (426),  Expect = 0.0
 Identities = 488/518 (94%), Gaps = 4/518 (1%)
 Strand=Plus/Plus

Query  1    ATGGAGAAAGTGCAAGACACAAACACAAAGCAAGTTACCTTCTCGAAGCGTAGGCTGGGT  60
            |||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||
Sbjct  22   ATGGAGAAAGTGCAAGACACAAACACGAAGCAAGTTACCTTCTCAAAACGTAGGCTGGGT  81

Query  61   TTGTTCAAGAAAGCGAGTGAGCTTGCGACGCTGTGCAACGCCGAGGTTGGTATTGTTGTC  120
            ||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct  82   TTGTTCAAGAAAGCGAGCGAGCTTGCGACTCTGTGCAACGCGGAGGTTGGTATTGTTGTC  141

Query  121  TTTTCTCCAGGAAACAAACCTTATTCCTTCGGGAAACCGAATTTTGATTTGATTGCAGAA  180
            |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct  142  TTTTCTCCAGGAAACAAACCGTATTCCTTCGGGAAACCGAATTTTGATGTGATTGCAGAA  201

Query  181  CGGTTTAAGAATGAATTCGAAGAAGAAGAAGAAGCAGATAGCTGTGAAACATCAGGCTAT  240
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  202  CGGTTTAAGAATGAATTCGAAGAAGAAGAAGAAGGAGATAGCTGTGAAACATCAGGCTAT  261

Query  241  AGTAGAGGCAAGAGAGCTAGACAAGAGAAGAAGATATGTAAACGCCTCAACTCGATCA-T  299
            ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| | |
Sbjct  262  AGTAGAGGCAATAGAGCTAGACAGGAGAAGAAGATATGTAAACGCCTCAACTCGATTACT  321

Query  300  CGAAGAAGCTGAAGCTGAGAAGAAACATGGAGAAGATCTTCACAAGTGGCTTGAATCTGC  359
             ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  322  -GAAGAAGCTGAAGCTGAGAAGAAACATGGTGAAGATCTTCACAAGTGGCTTGAATCTGC  380

Query  360  TCAACAAGATAGGTTTAATAAGCCCATTGAGGAGCTTACTCTTGAGGAGCTCAAAGAATT  419
            | |||| |||| ||| ||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct  381  TGAACAGGATAAGTTCAATAAGCCCATTGAGGAGCTTACGCTTGAGGAACTCAAGGAATT  440

Query  420  TGAAGCTAAGATTCAAGAAAC-AAGGTGTGGGATTCAAAGTAACATTAATCATATGCAGG  478
            ||| ||||||||| ||||||  ||| |||||||| ||||||||||||| |||||||||||
Sbjct  441  TGAGGCTAAGATT-AAGAAAATAAGCTGTGGGATCCAAAGTAACATTAGTCATATGCAGG  499

Query  479  CTTCGTCTTCTCTCATGTTTCTCTCTAAGGATAATTAG  516
            |||||||||||||||||||||||||||| |||||||||
Sbjct  500  CTTCGTCTTCTCTCATGTTTCTCTCTAATGATAATTAG  537



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24664966177


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5