BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477980
Length=2108
Score E
Sequences producing significant alignments: (Bits) Value
AT3G66658.2 | Symbols: ALDH22A1 | aldehyde dehydrogenase 22A1 |... 3232 0.0
> AT3G66658.2 | Symbols: ALDH22A1 | aldehyde dehydrogenase 22A1
| chr3:2095105-2099151 REVERSE LENGTH=2165
Length=2165
Score = 3232 bits (1750), Expect = 0.0
Identities = 1956/2048 (96%), Gaps = 43/2048 (2%)
Strand=Plus/Plus
Query 1 AAATCCAT-ATGCTCTTCGTTGATTCCTATTTCTATTTTTCCGATT------GACG--GA 51
|||||||| | ||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 4 AAATCCATCA-GCTCTTCGTTGATTCCTATTTCTATTTTTCCGATTGACGGAGACGCCGA 62
Query 52 GATTTATCCTTCAT---C---G-------GC--G--TTCTCAAAGCCCTAGCTGAAGAAT 94
|||||||||||||| | | || | ||||||||||||||||||||||||
Sbjct 63 GATTTATCCTTCATCGGCGTTGTCTTTTCGCTGGATTTCTCAAAGCCCTAGCTGAAGAAT 122
Query 95 CTCTGAACAAGTGGAAATGTCGTTCTGGTGGCCACTGATCGTTCTCGCCTTCGCTTACGC 154
||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||
Sbjct 123 CTCTGAACAAGTGGAAATGCCGTTTTGGTGGCCACTGATCGTCCTCGCCTTCGCTTACGC 182
Query 155 GATCTGCAAGTTCCTTCTTATGCTCATTCCTCCCAATGTTCCTTCCATTGACGTAGACGC 214
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 183 GATCTGCAAGTTCCTTCTTATGCTCATTCCTCCCAATGTTCCTTCCATTGACGTTGACGC 242
Query 215 ATCCGATGTGTTGGCTCATGGGAAAGATACGGAGGAGAATAGCTTCATTTATATTCCTCC 274
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 243 ATCCGATGTGTTGGCTCATGGGAAAGATACGGAGGAGAATAGCTTCATCTATATTCCTCC 302
Query 275 GAGAGGCAGGAGCCAACAGTCAGACAAAAAAGTTCAATGCTATGAACCTGCTACAATGAA 334
||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||||||||
Sbjct 303 CAGAGGAAGGAGCCAACAGTCTGACAAAAAAGTTCAATGTTATGAACCTGCCACAATGAA 362
Query 335 ATATCTCGGATATTTCCCTGCTCTGTCGCCTACTGAGGTTGAGGAGCGAGTAACACTATC 394
|||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 363 ATATCTGGGATATTTCCCTGCTCTGTCGCCTACTGAGGTCGAGGAGCGCGTAACACTATC 422
Query 395 AAGGAAGGCTCAAAAGACATGGGCTCAAAGTAGCTTCAAGCTAAGAAGGCAGTTCTTGCG 454
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 423 AAGGAAGGCTCAAAAGACATGGGCTCAAAGTAGCTTCAAGCTTAGAAGGCAGTTCTTGCG 482
Query 455 GATTCTTCTAAAGTACATTATTGAACACCAAGAGCTTATATGCGAAGTCTCATCACGTGA 514
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 483 GATTCTTCTTAAGTACATTATTGAACACCAAGAGCTTATATGCGAAGTCTCTTCACGTGA 542
Query 515 TACCGGAAAGACTATGGTAGATGCGTCCCTGGGAGAAATAATGACTACTTGTGAGAAAAT 574
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 543 TACTGGAAAGACTATGGTAGATGCGTCCCTGGGAGAAATTATGACTACTTGTGAGAAAAT 602
Query 575 TACTTGGCTTCTTTCTGAGGGCGAACGATGGTTAAAGCCTGAATCTCGTTCTTCAGGAAG 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 TACTTGGCTTCTTTCTGAGGGCGAACGATGGTTAAAGCCTGAATCTCGTTCTTCAGGAAG 662
Query 635 AGCTATGCTTCATAAAGTATCAAGAGTAGAGTTCCATCCCCTTGGTGTCATTGGAGCTAT 694
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 663 AGCTATGCTTCATAAAGTATCACGAGTAGAGTTCCATCCCCTTGGTGTCATTGGAGCTAT 722
Query 695 AGTCCCATGGAATTATCCCTTCCACAATATTTTCAATCCTATGCTGGCTGCAGTCTTCTC 754
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 723 AGTCCCATGGAATTATCCCTTCCACAATATTTTCAACCCTATGCTGGCTGCAGTCTTCTC 782
Query 755 GGGGAATGGCATTGTTATTAAGGTTTCAGAACACGCTAGCTGGTCGGGATGCTTTTACTT 814
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 TGGGAATGGCATTGTTATTAAGGTTTCAGAACACGCTAGCTGGTCGGGATGCTTTTACTT 842
Query 815 CCGCATAATCCAGGCAGCTTTAGCTGCTGTTGGAGCACCTGAAAATCTAGTCGATGTGAT 874
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 843 CCGCATAATCCAGGCAGCTTTAGCTGCTGTTGGAGCACCAGAAAATCTAGTCGATGTGAT 902
Query 875 AACAGGGTTTGCGGAGACCGGAGAAGCACTTGTCTCATCTGTTGATAAAATGATATTTGT 934
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 AACAGGGTTTGCGGAGACCGGAGAAGCACTTGTCTCATCTGTTGATAAAATGATATTTGT 962
Query 935 TGGATCCACAGCTGTTGGCAAAATGATAATGAGAAATGCAGCCGAGACATTGACACCTGT 994
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 963 TGGATCCACAGCTGTTGGCAAGATGATAATGAGAAATGCTGCCGAGACATTGACACCTGT 1022
Query 995 CACACTTGAGCTTGGTGGAAAAGATGCATTTATCATATGTGAAGACGCAGATGTCTCACA 1054
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 CACTCTTGAGCTTGGTGGAAAAGATGCATTTATCATATGTGAAGACGCAGATGTCTCACA 1082
Query 1055 TGTTGCTCAAGTGGCTGTAAGGGGCACTCTTCAGTCCAGCGGGCAAAACTGTGCAGGTGC 1114
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1083 TGTTGCACAAGTGGCTGTAAGGGGCACTCTTCAGTCCAGCGGGCAAAACTGTGCCGGTGC 1142
Query 1115 TGAAAGATTTTATGTTCACAAAGACATTTATACTGCATTCATTAGCCAAGTAACCAAGAT 1174
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1143 TGAAAGATTTTATGTCCACAAAGACATTTATACTGCATTCATTGGCCAAGTAACCAAGAT 1202
Query 1175 TGTGAAGTCAGTTTCTGCTGGTCCTCCTCTAACCGGGAGGTATGACATGGGTGCTATATG 1234
||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 1203 TGTGAAGTCAGTTTCTGCTGGTCCTCCTCTAACTGGAAGGTATGACATGGGAGCTATATG 1262
Query 1235 TTTGCAAGAGCACTCTGAACACCTACAGAGCCTTGTAAATGACGCCTTAGACAAAGGAGC 1294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1263 TTTGCAAGAGCACTCTGAACACCTACAGAGCCTTGTAAATGACGCCTTAGACAAAGGAGC 1322
Query 1295 AGAAATTGCAGTCCGTGGCAGCTTTGGTCATTTGGGCGAAGATGCAGTCGATCAATATTT 1354
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 1323 TGAAATTGCAGTCCGTGGCAGCTTTGGTCATCTGGGGGAAGATGCAGTCGATCAATATTT 1382
Query 1355 CCCTCCAACTGTTCTCATCAATGTAAACCACAACATGAAAATAATGAAAGAAGAGGCTTT 1414
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1383 CCCTCCAACTGTTCTCATCAATGTGAACCACAACATGAAAATAATGAAAGAAGAGGCTTT 1442
Query 1415 TGGACCAATAATGCCAATCATGCAATTCAGCACCGATGAAGAGGTCATAAAGCTGGCAAA 1474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1443 TGGACCAATAATGCCAATCATGCAATTCAGCACCGATGAAGAGGTCATAAAGCTGGCAAA 1502
Query 1475 TGATTCACGTTATGCGCTAGGCTGTGCTGTTTTCTCTGGAAGCAAGCATCGCGCCAAACA 1534
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1503 TGATTCACGTTATGCTCTAGGCTGTGCTGTTTTCTCTGGAAGCAAGCATCGCGCCAAACA 1562
Query 1535 AATAGCTTCTCAAATTCAGTGCGGTGTTGCTGCAATCAATGACTTTGCCTCAAATTACAT 1594
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1563 AATAGCTTCTCAAATTCAGTGCGGTGTTGCTGCAATCAATGACTTTGCATCAAATTACAT 1622
Query 1595 GTGCCAGTCGCTCCCGTTTGGAGGTGTAAAGGATAGTGGGTTTGGACGGTTTGCTGGTAT 1654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1623 GTGCCAGTCGCTCCCGTTTGGAGGTGTAAAGGATAGTGGGTTTGGACGGTTTGCTGGAAT 1682
Query 1655 AGAAGGTTTAAGAGCATGCTGCCTTGTGAAATCGGTGGTTGAAGATAGATTTTGGCCACT 1714
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1683 AGAAGGTTTAAGAGCATGCTGTCTTGTGAAATCGGTGGTTGAAGATAGATTTTGGCCACT 1742
Query 1715 CATCAAGACCAAGATTCCAAAACCTATTCAGG--CA---A-CAGAAAACGCATTTGAATT 1768
||||||||||||||||||||||||||||||| | | |||||||||||||||||||
Sbjct 1743 CATCAAGACCAAGATTCCAAAACCTATTCAGTATCCGGTAGCAGAAAACGCATTTGAATT 1802
Query 1769 CCAGGAGGCACTAGTCGAAACTCTTTACGGACTCAACATTTGGGACCGGCTAAGATCCCT 1828
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1803 CCAGGAGGCCCTAGTCGAAACTCTTTATGGACTCAACATTTGGGACCGGCTAAGATCCCT 1862
Query 1829 AATCGATGTCCTCAAGTTCCTTACCGATCAGAGCTCTAATGTGAGCAGAACTAGAAAGAG 1888
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1863 AATCGATGTCCTCAAGTTCCTTACCGATCAGAGCTCTAACGTGAGCAGAACTAGAAAGAG 1922
Query 1889 CCACTGAGGATTAATGACGAAAA-CTTGGTGTCCACTGTCCACATAAAACCTTTACTCTT 1947
||||||| || ||||||||||| |||||||||||| | ||||||||||||||||
Sbjct 1923 CCACTGAAGACCAATGACGAAAAACTTGGTGTCCAC-----A--TAAAACCTTTACTCTT 1975
Query 1948 TACATGCGTCAGCTGAGTTGCTGATATTGCAAAGCTAATTTTG-ATTATTAGTGAGCATT 2006
||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct 1976 TACATGCGTCAGCTGAGTTGCTGATATTGCAAAGCTAATTTTGGATAAT-AGTGAGCATT 2034
Query 2007 TTGGGttt 2014
||||||||
Sbjct 2035 TTGGGTTT 2042
Score = 156 bits (84), Expect = 1e-36
Identities = 93/97 (96%), Gaps = 2/97 (2%)
Strand=Plus/Plus
Query 2013 tttttttttttG-CTCGGAAGGGCGATTTGTGACTTATGAAATATTTGAAAATCCACTTT 2071
|||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2067 TTTTTTTTTTTGCCT-GGAAGGGCGATTTGTGACTTGTGAAATATTTGAAAATCCACTTT 2125
Query 2072 TGCGTTGTCTTATAATAGGAAACTGTTGTTTGGTCTC 2108
|||| ||||||||||||||||||||||||||||||||
Sbjct 2126 TGCGCTGTCTTATAATAGGAAACTGTTGTTTGGTCTC 2162
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104517534690
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5