BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477982
Length=1530
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06660.1 | Symbols: | PAPA-1-like family protein / zinc fin... 1714 0.0
> AT3G06660.1 | Symbols: | PAPA-1-like family protein / zinc finger
(HIT type) family protein | chr3:2102402-2104906 FORWARD
LENGTH=1755
Length=1755
Score = 1714 bits (928), Expect = 0.0
Identities = 1057/1119 (94%), Gaps = 9/1119 (1%)
Strand=Plus/Plus
Query 415 ACCAATAGTCTCTGTGGGTCTGTGAGTGAGAACAAACTGAAACTGAAGCTTAAGCTTGGT 474
||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 522 ACCAATAGTTTATGTGGGTCTGTGAGTGAGAACAAACTGAAAGTGAAGCTTAAGCTTGGT 581
Query 475 GGTGGTGTTACTCGTACGTTGCAAACCAACTCTGAGGCGGGT-CTTTATTCCAAAGCTTT 533
| ||||||||| |||||||||||||||||||||||||||||| | |||| ||||||||||
Sbjct 582 GCTGGTGTTACCCGTACGTTGCAAACCAACTCTGAGGCGGGTAC-TTATACCAAAGCTTT 640
Query 534 GGATAATGGACAAAAGCCATTTCAAAATAAGGTAAAAGGCAATAGTCATGTTCAGAAAAC 593
||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 641 GGATAATGGACAAAAACCATTTCAAAGTAAGGTAAAAGGCAATGGTCATGTTCAGAAAAC 700
Query 594 ACTGTTTCTAGGAGATATCCATCAATCTAGAGGATATCCGTCTGAGACTGGGAACCGAAT 653
|||||||||||||||||| |||||||||||||||||||||||| |||||| ||| | |
Sbjct 701 ACTGTTTCTAGGAGATATACATCAATCTAGAGGATATCCGTCTAAGACTGAGAA-TG-GT 758
Query 654 -C-TCCATGTCTGAGAAGAGCAAACGAGGTCTTAAGAAACGTGTATTGGATCCAGAACCA 711
| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 759 GCGTCCATGTCCGAGAAGAGCAAACGAGGTCTTAAGAAACGTGTATTGGATCCAGAGCCA 818
Query 712 GACAGTGATGATGATGGAGATGAGGAAATCAGATACCTCGTAAAGTTAAAGTCTAAAAGG 771
|||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 819 GACA--G-TGATGATGGAGATGAGGAAATCAGATACCTCGTAAAGTTAAAGTCTAAAAGG 875
Query 772 GTCAGGGACTCTCATGAAGGTAAAGAGAGTGAAGGAGGCACAAGGATACACAGCAATGGT 831
||| ||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 876 GTCGGGGTCTCTCATGAAGGTAAAGAGAGTGAAGGAGGCAGAAGGATACACAGCAGTGGT 935
Query 832 CATGACATGGAAGACACAAAACATCCCTCATCAGACAAACTTGCTGTATCCGGAAGGAAA 891
||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 936 CATGACATGGAAGACGGAAAACATCTCTCATCAGACAAACTTGCTGTGTCCGGAAGGAAA 995
Query 892 AAGCCGAAGATGGGAATGGTTGATCCGCTTCCAGCAGGAGCGACAAGCGGGCAAATTCCT 951
|||||| ||||||||||||||||||||| || ||||||| |||||||| |||||||||
Sbjct 996 AAGCCGGTGATGGGAATGGTTGATCCGCTCCCGGCAGGAGAAACAAGCGGACAAATTCCT 1055
Query 952 ACTACACGTACTCGGGCTCTCCAATCTGGAACGGATCCACATTCTGTCATTGGGTCGGGG 1011
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
Sbjct 1056 ACTACACGTACTCGGGCTCTCCAATCTGGAAAGGATCCACATTCTGTCATCAGGTCGAGT 1115
Query 1012 CCTCTTGAATTCCCTGATGGCTTACCTTGCCCCTCATCTAAAAGACCAAAACAGAAGCTT 1071
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1116 TCTCTTGAGTTCCCTGATGGCTTACCTTGCCCCTCATCTAAAAGACCAAAACAGAAGCTT 1175
Query 1072 TCTGAGGTAGAGCAACAATCCAAGAAGGCCGAAGCTGCACAGAGACGGCGAATGCAGTCT 1131
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1176 TCTGAGGTAGAGCAACAATCCAAGAAGGCCGAAGCTGCACAGAGACGGCGAATGCAGTGT 1235
Query 1132 GAGAAGGCTGCCCAAGAAGCCGAGGCTGAAGCTATCAGGAAAATACTTGGGCAAGATTCT 1191
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1236 GAGAAGGCTGCCCAAGAAGCCGAGGCTGAAGCTATCAGGAAAATACTCGGACAAGATTCT 1295
Query 1192 Gggagaaagaaaaaagaggagaagatcaaaaaacaacaggaagaacgagctcaggagaga 1251
|| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1296 GGTAGAAAGAAAAGAGAGGAGAAGATAAAAAAACAACAGGAAGAACGAGCTCAGGAGAGA 1355
Query 1252 gCTGCAAGATCAAGCACACTCGCATCAAACACTATCAGATTGGTGATTGGTCCAAGTGGA 1311
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1356 GCTGCAAGATCAAGCACACTCGCATCAAACACTATCAGATTGGTTATTGGTCCAAGTGGA 1415
Query 1312 ACAACTATGACATTTTCTGAAGACATTGGTCTTCCGGATATCTTCAAGCCAATCACGTAT 1371
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1416 ACAACTATGACATTTTCTGAAGACATTGGTCTTCCAGATATCTTCAAGCCAGTCACGTAC 1475
Query 1372 AGTTATCCTCCTCCACGAGAGAAATGTGTGGGACCAAATTGCGAGAAAGCTTACAAGTAC 1431
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1476 AGTTATCCTCCTCCGCGAGAGAAATGTGTGGGACCAAATTGCGAGAAAGCGTACAAGTAC 1535
Query 1432 AGGGATTCAAAGTCGAAGCTGCCATTATGCAGTCTCGGATGTTACAAGGCCATTCAAGAG 1491
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1536 AGGGATTCAAAGTCGAAGCTGCCATTATGTAGTCTCGGATGTTACAACGCCATTCAAGAG 1595
Query 1492 AAGATGGAACAAGCACTGATTCATTGCTAATTGCTTAAC 1530
||||||||||||||||||||||||||||||||||| |||
Sbjct 1596 AAGATGGAACAAGCACTGATTCATTGCTAATTGCTCAAC 1634
Score = 263 bits (142), Expect = 4e-69
Identities = 308/381 (81%), Gaps = 39/381 (10%)
Strand=Plus/Plus
Query 67 cttcttcttcttcttctCAACTCCATTATCTAATTCTAGGGttttt-t-t--ttC-TC-T 120
|||||||||||||||||||||||||||||||||||||||||||||| | | ||| || |
Sbjct 112 CTTCTTCTTCTTCTTCTCAACTCCATTATCTAATTCTAGGGTTTTTCTCTCCTTCTTCTT 171
Query 121 --C-C-T-TC--T-TCT-T--CG-CGC----TTC-TCTTTCCCTCGAAAAACTGGTGTTA 163
| | | || | ||| | || ||| ||| |||||||||||||| ||||||||||
Sbjct 172 CGCACTTCTCTTTCTCTCTCCCGCCGCTTGTTTCTTCTTTCCCTCGAAACACTGGTGTTA 231
Query 164 CTGTGAGTTTCTCGTTTGAATTTTGGGGATTTCTTAAAGAATTCACTGAGAAG-AAGGCT 222
||||||| ||||||||||||||| ||||||||||||| ||||||||||||||| | |
Sbjct 232 CTGTGAGATTCTCGTTTGAATTTAGGGGATTTCTTAACGAATTCACTGAGAAGCACTAAT 291
Query 223 TTAG-AGGTGGGT-TTA-TCGTTTTTTAGTTATGGATATCACTATT-TTATTATAATGGA 278
| | |||| | | ||| || |||| | || || | || || | | ||||||||
Sbjct 292 TGCGAAGGT-GTTGTTAGAGGTATTTT-G--CTGCATCT-ACGCTTGTCCTGATAATGGA 346
Query 279 GGGA-TGTGAAGCTTCTGCTTCTTCTTTAGCTGGCTTTACCGGTAGGAGAAGGAGAAGCG 337
||| | || || |||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 347 -GGACTCTGGAGGTTCTGCTTCTACTTTAGCTGGCTTTACGGGTAGGAGAAGGAGAAGCG 405
Query 338 CTCTGCCTCGTCGACCCCGCGTTAT-AAATGGGAGCGCCCATAGTTTCAAGTT-CTTGCC 395
||||||||||||||||||||| ||| ||| |||||| |||||||||||||| || |||
Sbjct 406 CTCTGCCTCGTCGACCCCGCGATATTAAA-GGGAGCTTGCATAGTTTCAAGTTTCT-GCC 463
Query 396 ACCTTCAACACAGGCAAACAC 416
||| ||||| ||| |||||||
Sbjct 464 ACCCTCAACGCAGACAAACAC 484
Score = 110 bits (59), Expect = 6e-23
Identities = 81/90 (90%), Gaps = 8/90 (9%)
Strand=Plus/Plus
Query 1 GGAGGAGATAAAGATTTTGGGCACCTCTCTTCCACATTTACCCTTCACTTAAAGCCAATC 60
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1 GGAGGAGATAAAGATTTTGGG-ACATCTCTTCCACATTTACCCTTCACTTAAAGCCAATC 59
Query 61 -------GAGAGActtcttcttcttcttct 83
|||||||||||||||||||||||
Sbjct 60 CTCTCTCGAGAGACTTCTTCTTCTTCTTCT 89
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75501619680
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5