BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477985
Length=428
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06680.1 | Symbols: | Ribosomal L29e protein family | chr3:... 448 3e-125
AT3G06700.1 | Symbols: | Ribosomal L29e protein family | chr3:... 291 5e-78
> AT3G06680.1 | Symbols: | Ribosomal L29e protein family | chr3:2114254-2114879
REVERSE LENGTH=402
Length=402
Score = 448 bits (242), Expect = 3e-125
Identities = 317/351 (90%), Gaps = 13/351 (4%)
Strand=Plus/Plus
Query 87 AGTTGTGTTGTGCCGTTGTTACAGAGATGGC-AAAGTCAAAGAATCACACGGCGCACAAT 145
||||||||||||||||||||||||| ||||| ||| || |||||||||||||||||||||
Sbjct 43 AGTTGTGTTGTGCCGTTGTTACAGAAATGGCGAAA-TCGAAGAATCACACGGCGCACAAT 101
Query 146 CAGTCTGCCAAGGCGCATAAGAACGGAATCAAGAAGCCAAGGAGGCACCGTCACACCCCA 205
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 102 CAGTCTGCCAAGGCGCATAAGAACGGAATCAAGAAGCCAAGGAGACACCGTCACACACCA 161
Query 206 ACCAGAGGAATGGATCCTAAGTTCCTAAGGAACCAGAGGTACGCAAGGAAGCACAACATC 265
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||| ||
Sbjct 162 ACCAGAGGAATGGATCCTAAATTCCTAAGAAACCAGAGGTATGCAAGGAAGCACAACGTC 221
Query 266 AAGAGTGGCGAGAATGCTAGCG-CTGAAGAGTAGATCTTTTGATCGCCTCATAGGCATTT 324
|||||||||||||||||| | | | ||||||||||||||||||||| || || | || ||
Sbjct 222 AAGAGTGGCGAGAATGCTGGTGTC-GAAGAGTAGATCTTTTGATCGTCTGATTGACAGTT 280
Query 325 TAAGGTTTTTT-ATGAATTTCACTT-TCTTAGACAAAG-AACCAATGTACTACAATCAGG 381
|||| |||||| ||||||||||||| | |||||||||| ||||||||| |||||||||||
Sbjct 281 TAAGTTTTTTTTATGAATTTCACTTGT-TTAGACAAAGGAACCAATGTTCTACAATCAGG 339
Query 382 GATTGTGTCTATTTCAAATTCTCTTAT-T-TT--GCAAGTTACTTGATTTG 428
|||| ||||||| || |||||||||| | || ||| |||||||||||||
Sbjct 340 GATTATGTCTATC-CAGATTCTCTTATATATTTTGCATGTTACTTGATTTG 389
> AT3G06700.1 | Symbols: | Ribosomal L29e protein family | chr3:2117347-2118007
REVERSE LENGTH=463
Length=463
Score = 291 bits (157), Expect = 5e-78
Identities = 238/275 (87%), Gaps = 13/275 (5%)
Strand=Plus/Plus
Query 108 CAGAGATGGCAAAGTCAAAGAATCACACGGCGCACAATCAGTCTGCCAAGGCGCATAAGA 167
|||||||||| ||||| ||||||||||||||||| || ||||| || || || || ||||
Sbjct 101 CAGAGATGGCCAAGTCGAAGAATCACACGGCGCATAACCAGTCGGCGAAAGCCCACAAGA 160
Query 168 ACGGAATCAAGAAGCCAAGGAGGCACCGTCACACCCCAACCAGAGGAATGGATCCTAAGT 227
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 161 ACGGAATCAAGAAGCCAAGGAGACACCGTCACACCCCAACCAGAGGAATGGACCCTAAGT 220
Query 228 TCCTAAGGAACCAGAGGTACGCAAGGAAGCACAACATCAAGAGT-GGCGAGAATGCTAGC 286
|||| |||||||||||||||||||||||||||||| ||||| | |||||||||||||||
Sbjct 221 TCCTGAGGAACCAGAGGTACGCAAGGAAGCACAACGTCAAG-GCCGGCGAGAATGCTAGC 279
Query 287 GCTGAAGAGTA-GATCTTTTGATCGCCTCAT-AGGCATTTT-AAGGTTTTTT--A-TGAA 340
|||||||| || | | ||||||| || | || |||||| ||| |||||| | ||||
Sbjct 280 GCTGAAGAATAAG-TGTTTTGATTATCTG-TGAGACATTTTGAAGTTTTTTTTTAATGAA 337
Query 341 TTTCA--CTTTCTTAGACAAAG-AACCAATGTACT 372
||| | ||||||||||||||| ||||||| ||||
Sbjct 338 TTTAAGACTTTCTTAGACAAAGGAACCAATTTACT 372
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20308170596
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5