BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477986
Length=2193
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06720.1 | Symbols: AT-IMP, ATKAP ALPHA, AIMP ALPHA, IMPA-1,... 3302 0.0
AT1G55035.1 | Symbols: | pseudogene, putative importin alpha, ... 1194 0.0
AT5G49310.1 | Symbols: IMPA-5 | importin alpha isoform 5 | chr5... 824 0.0
> AT3G06720.1 | Symbols: AT-IMP, ATKAP ALPHA, AIMP ALPHA, IMPA-1,
IMPA1 | importin alpha isoform 1 | chr3:2120324-2124131 FORWARD
LENGTH=2330
Length=2330
Score = 3302 bits (1788), Expect = 0.0
Identities = 2048/2168 (94%), Gaps = 40/2168 (2%)
Strand=Plus/Plus
Query 1 GCTTTCATTCTTTGGTTGCGCTGTTGTCAACTTGTCCCTCGCTGCCTCTGCTTCTTAA-- 58
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GCTTTCATTCTTTGGATGCGCTGTTGTCAACTTGTCCCTCGCTGCCTCTGCTTCTTAACT 60
Query 59 C--TCTTTATCACTTTTTCACTCCCAAATCAATTTTTAGGGtttttttttttttttttAA 116
| |||||||||||||| |||||||||||||||||||| || |||||||| | || | |
Sbjct 61 CTTTCTTTATCACTTTTCCACTCCCAAATCAATTTTTA-GG-TTTTTTTTATAATTAT-A 117
Query 117 ATTTTATTTGCTCTCCGCAGGATCTATAT-ATACACAAACCACTCGTTGCGTGTGTC-TG 174
| ||||||||||||| ||||||||||||| ||||||| |||| || ||||||||| | ||
Sbjct 118 A-TTTATTTGCTCTCGGCAGGATCTATATAATACACAGACCAGTCTTTGCGTGTG-CTTG 175
Query 175 TGAGCATTCATTGATCGGGTTAATTTCTCTTTTATCGGATTTTCCTTGTCGAGCCAGAGC 234
|| |||||||||||||||||| || ||| ||| ||||||||||| ||||||||| |||||
Sbjct 176 TGTGCATTCATTGATCGGGTTTATATCT-TTTCATCGGATTTTCTTTGTCGAGCAAGAGC 234
Query 235 CATGTCGCTGAGACCCAACGCCAGGACGGAGGTTCGCCGGAACAGGTACAAAGTTGCTGT 294
|||||| |||||||||||||| | ||||||||||||||||||| | ||||||||||| ||
Sbjct 235 CATGTCACTGAGACCCAACGCTAAGACGGAGGTTCGCCGGAACCGATACAAAGTTGCAGT 294
Query 295 GGATGCGGAGGAAGGACGACGGAGGAGAGAGGACAACATGGTTGAGATCCGTAAAAGTAA 354
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 295 GGATGCGGAGGAAGGACGACGGAGGAGAGAAGACAACATGGTTGAGATCCGTAAAAGCAA 354
Query 355 GCGTGAGGAGAGTTTGATGAAGAAGAGACGTGAAGGTATGCAAGCTCTTCAGGATTTCCC 414
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 355 GCGTGAGGAGAGTTTGATGAAGAAGAGACGTGAAGGTATGCAAGCTCTTCAGGGTTTCCC 414
Query 415 TTCAGCTTCCGCCGCCTCCGTCGATAAGAAGTTGGAGAGTTTGCAGGATATGGTCGCTGG 474
|||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||
Sbjct 415 TTCAGCTTCCGCCGCCTCCGTCGATAAGAAGTTGGATAGTCTGAAGGATATGGTCGCTGG 474
Query 475 GGTTTTGTCCGATGATCCTGCCTTGCAGCTTGAGTCCACTACTCAGTTCAGGAAGCTTCT 534
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 GGTTTGGTCCGATGACCCTGCCTTGCAGCTTGAGTCCACTACTCAGTTCAGGAAGCTTCT 534
Query 535 CTCTATTGAGAGAAGTCCTCCAATCGAGGAAGTGAT-AGCTGCTGGTGTTGTTCCTCGGT 593
|||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||
Sbjct 535 CTCTATTGAGAGAAGTCCTCCAATCGAGGAAGTGATAAG-TGCTGGTGTTGTTCCTAGGT 593
Query 594 TTGTTGAGTTTCTTAAGAAAGAAGATTACCCCGCGATTCAGTTTGAGGCAGCTTGGGCTC 653
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 594 TTGTTGAGTTTCTTAAGAAAGAAGATTACCCCGCCATTCAGTTTGAGGCAGCTTGGGCTC 653
Query 654 TGACAAACATTGCATCTGGAACATCCGATCACACTAAGGTTGTAATCGATCACAATGCTG 713
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 654 TAACAAACATTGCATCTGGAACATCGGATCACACTAAGGTTGTAATCGATCACAATGCTG 713
Query 714 TTCCAGTCTTTGTACAGCTTCTTGCTTCCCCTAGCGATGATGTCCGTGAGCAGGCTGTAT 773
||||| ||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 714 TTCCAATCTTTGTTCAGCTTCTTGCTTCCCCTAGCGATGATGTTCGTGAACAGGCTGTAT 773
Query 774 GGGCTTTGGGTAACGTTGCTGGTGATTCACCACGGTGCCGTGATCTTGTTCTTGGATGTA 833
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 GGGCTTTGGGTAACGTTGCTGGTGATTCACCACGGTGCCGTGATCTTGTTCTTGGATGTG 833
Query 834 GGGCACTGCTTCCGCTGCTCAATCAGCTTAATGAGCATGCCAAATTGTCCATGCTTCGAA 893
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 834 GGGCACTGCTTCCGCTGCTCAATCAGCTTAATGAGCATGCTAAATTGTCCATGCTTCGAA 893
Query 894 ATGCCACATGGACCTTGTCAAACTTCTGTCGTGGCAAGCCTCAGCCTCACTTTGACCAGG 953
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 ATGCCACTTGGACCTTGTCAAACTTCTGTCGTGGCAAGCCTCAGCCTCACTTTGACCAGG 953
Query 954 TGAAACCTGCTCTTCCGGCCCTTGAACGACTAATTCATTCAAATGATGAAGAAGTCTTGA 1013
| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 954 TCAAACCTGCTCTTCCCGCCCTTGAACGACTAATTCATTCAGATGATGAAGAAGTCTTGA 1013
Query 1014 CAGATGCCTGTTGGGCTCTCTCATACCTCTCTGATGGGACCAATGACAAAATCCAGACTG 1073
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1014 CAGATGCCTGTTGGGCTCTTTCTTACCTCTCTGATGGGACCAATGACAAAATCCAGACTG 1073
Query 1074 TCATCGAGGCCGGTGTTGTCCCAAGACTTGTTGAACTTCTCCTCCATCCTTCTCCATCTG 1133
||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1074 TCATCCAGGCCGGTGTTGTCCCAAAACTTGTTGAACTTCTCCTCCATCATTCTCCATCTG 1133
Query 1134 TGCTAATTCCTGCACTTCGCACTGTTGGAAATATAGTTACTGGAGATGATTTACAAACAC 1193
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1134 TGCTAATTCCTGCTCTTCGCACTGTTGGAAATATAGTTACTGGAGATGATATACAAACAC 1193
Query 1194 AGTGGGTGATCAATAGTGGTGCTCTACCTTGTCTTGCCAACTTGCTCACTCAAAACTATA 1253
|||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1194 AGTGCGTGATCAATAGTGGTGCTCTACCTTGTCTTGCCAACCTGCTCACTCAAAACCATA 1253
Query 1254 AGAAAAGCATAAAGAAGGAAGCTTGCTGGACGATTTCAAACATCACAGCAGGCAACAAAG 1313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 AGAAAAGCATAAAGAAGGAAGCTTGCTGGACGATTTCAAACATCACAGCAGGCAACAAAG 1313
Query 1314 ATCAGATCCAGACGGTAGTTGAGGCTAATTTGATTGCCCCGCTGGTGAGTCTGCTTCAAA 1373
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1314 ATCAGATCCAGACGGTAGTTGAGGCTAATTTGATTTCCCCGTTGGTGAGTCTGCTTCAAA 1373
Query 1374 ATGCTGAATTTGACATTAAGAAAGAAGCTGCATGGGCAATTTCAAATGCAACTTCAGGTG 1433
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1374 ATGCTGAATTTGACATTAAGAAGGAAGCTGCATGGGCAATTTCAAATGCAACTTCAGGTG 1433
Query 1434 GTTCTCATGATCAAATCAAACACCTGGTGGAGCAAGGATGCATAAAACCATTATGCGACC 1493
|||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||| |
Sbjct 1434 GTTCTCATGATCAAATAAAATACCTGGTGGAGCAAGGGTGCATAAAACCATTATGCGATC 1493
Query 1494 TCCTAGTATGCCCAGATCCAAGAATCATAACGGTGTGCCTTGAAGGATTGGAAAACATTT 1553
|||| || ||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1494 TCCTGGTTTGCCCAGATCCAAGAATCATAACTGTCTGCCTTGAAGGATTGGAAAACATTT 1553
Query 1554 TGAAGGTGGGAGAGGCAGAGAAGAACTTGGGTAACACAGGAGACATGAACTATTACGCAC 1613
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 1554 TGAAGGTGGGAGAGGCAGAGAAGAACTTGGGTCACACAGGAGACATGAACTATTACGCTC 1613
Query 1614 AGCTGATTGATGATGCAGAAGGGCTAGAAAAGATTGAGAACCTTCAGAGCCATGACAACA 1673
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1614 AGCTGATTGATGATGCAGAAGGGCTAGAAAAGATCGAGAACCTTCAGAGCCATGACAACA 1673
Query 1674 ATGAGATCTATGAGAAGGCTGTTAAAATTCTGGAGACATACTGGCTTGAAGAGGAAGATG 1733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1674 ATGAGATCTATGAGAAGGCTGTTAAAATTCTGGAGACATACTGGCTTGAAGAGGAAGATG 1733
Query 1734 ATGAGACACAGCAACCTCCAGGTGTTGATGGTTCTCAGGCTGGGTTCCAGTTTGGAGGGA 1793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1734 ATGAGACACAGCAACCTCCAGGTGTTGATGGTTCTCAGGCTGGGTTCCAGTTTGGAGGGA 1793
Query 1794 ATCAAGCTCCAGTCCCATCCGGAGGATTCAACTTCAGCTGAAGGTaaaaaaaaGAATGGA 1853
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1794 ATCAAGCTCCAGTACCATCCGGAGGATTCAACTTCAGCTGAAGGTAAATAAAAGAATGGA 1853
Query 1854 ATTGGAAGCTTGCAACTTGAGAATGGTGAAAGGTCAGAGTCAGTCAGAGTCTAGTTTCAT 1913
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1854 ATTGGAAGCTTGCAACTTGAGAATGGTGAAAGGTCAGAGTCAGTCAGAGTCTAGTTTCAC 1913
Query 1914 TGCCAGGGTTATAGC-CCTGGTCTGGTCTGGTCTGGTCTGGTTCAGAGGTCTGTACCGGG 1972
||||| ||||||| | || |||||||||||||||||||| ||||||| |||||||||
Sbjct 1914 TGCCATGGTTATA-CTCCAGGTCTGGTCTGGTCTGGTCT----CAGAGGTTTGTACCGGG 1968
Query 1973 TGGTCGGTTTAAAAGTACAGAGTCTGAGAAAGTGGTTGGTTTCATTGTCCAGGGCTAttt 2032
|||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||
Sbjct 1969 TGGTCGGTTTAAAAGTACAGCGTCTGAGAAAGTGTTTGGTT-CATTGTCCAGGGCTATTT 2027
Query 2033 ttttGAAATGACTGGTACACCGGTCGTGGGTCGACTTTTGTGTTGTTTTAAAATTTT--A 2090
|||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||| |
Sbjct 2028 TTTTGAAATGACTGGTACACCGGTCGTGAGTCGACCTTTGTGTTGTTTTTAAATTTTGGA 2087
Query 2091 ------------C--AC--TGGAGTCTTT-GTTTTTGTGTTCACAACAGTTTGTATGTCG 2133
| || |||||||||| ||||||||||| ||||||||||||||||||
Sbjct 2088 GGGTTATAAAAACTTACAGTGGAGTCTTTTGTTTTTGTGTTGACAACAGTTTGTATGTCG 2147
Query 2134 GTTAAAAA 2141
||||||||
Sbjct 2148 GTTAAAAA 2155
> AT1G55035.1 | Symbols: | pseudogene, putative importin alpha,
similar to importin alpha GI:3342556 from (Arabidopsis thaliana);
blastp match of 66% identity and 2.6e-167 P-value to
GP|13752562|gb|AAK38727.1|AF369707_1|AF369707 importin alpha
2 {Capsicum annuum} | chr1:20532844-20534375 REVERSE LENGTH=1532
Length=1532
Score = 1194 bits (646), Expect = 0.0
Identities = 1258/1539 (82%), Gaps = 99/1539 (6%)
Strand=Plus/Plus
Query 236 ATGTCGCTGAGA-CCCAACGCC-AGGACGGAGGTTCGCCGGAA-CAGGTACAAAGTTGCT 292
|||||||||| | || || || | | ||||||| |||||||| || ||||||||||||
Sbjct 1 ATGTCGCTGA-ATCCTAATACCAAAG-CGGAGGTCCGCCGGAATCA-GTACAAAGTTGCG 57
Query 293 GTGGATGCGGAGGAAGGACGACGGAGGAGAGAGGACAACATGGTTGAGATCCGTAAAAGT 352
|||||||| ||||| ||||||||||||||||| || | |||||||||| | ||||||| |
Sbjct 58 GTGGATGCAGAGGAGGGACGACGGAGGAGAGAAGAGAGCATGGTTGAGGTTCGTAAAA-T 116
Query 353 -AAGCGTGAGGAGAGTTTGATGAAGAAGAGACGTGAAGGTATGCAAGCTCTTCAGGATTT 411
|| || ||||||||| ||||||||||||| |||||| | | |||| | || ||
Sbjct 117 CAAACGCGAGGAGAGTCTGATGAAGAAGAGGCGTGAA-G--T------TCTTGATGAGTT 167
Query 412 CCCTTCAGCTTCCGCCGCCTCCGTCGATAAGAAGTTGGAGAGTTTG-CAGGATATGGTCG 470
| || | || | | | | |||| |||||||||||||||| | |||||||||||
Sbjct 168 --C-TCGGGTT-TG--G--T---T-GATACGAAGTTGGAGAGTTTGTC-GGATATGGTCG 214
Query 471 CTGGGGTTTTGTCCGATGATCCTGCCTTGCAGCTTGAGTCCACTACTCAGTTCAGGAAGC 530
||||||||| ||| ||||||| |||||||||||| ||| ||||||||| ||||| |
Sbjct 215 CTGGGGTTTGGTCAGATGATCTTGCCTTGCAGCTCAAGTACACTACTCAAATCAGGGCCC 274
Query 531 TTCTCTCTATTGAGAGAAG-TCCTCCAATCGAGGAAGTGATAGCTGCTGGTGTTGTTCCT 589
|||| |||| | ||| || ||||| |||||| |||||||||| | ||||||||||||||
Sbjct 275 TTCTATCTAGGGCGAG-AGATCCTCTAATCGACGAAGTGATAGATTCTGGTGTTGTTCCT 333
Query 590 CGGTTTGTTGAGTTTCTTAAGAAAGAAGATTACCCCGCGATTCAGTTTGAGGCAGCTTGG 649
|||||||| ||||||||||||||||||||| |||| |||||||| |||||||||||||
Sbjct 334 CGGTTTGTAGAGTTTCTTAAGAAAGAAGATAACCCTAAGATTCAGTATGAGGCAGCTTGG 393
Query 650 GCTCTGACAAACATTGCATCTGGAACATCCGATCACACTAAGGTTGTAATCGATCACAAT 709
||||| |||||||||| ||| ||||| || |||| || ||||||||| | |||| ||||
Sbjct 394 GCTCTAACAAACATTGTATCAGGAACTTCAAATCATACAAAGGTTGTAGTAGATCTCAAT 453
Query 710 GCTGTTCCAG-TCTTTGTACAGCTTCTTG---CTTCCCCTAGCGATGATGTCCGTGAGC- 764
|||||||| | ||||||| || ||||||| ||||||| ||||| ||||||||||| |
Sbjct 454 GCTGTTCC-GATCTTTGTCCACCTTCTTGCTTCTTCCCCAAGCGACGATGTCCGTGAACT 512
Query 765 AGGCTGTATGGGCTTTGGGTAACGTTGCTGGTGATTCACCACGGTGCCGTGATC-T-TGT 822
| ||||||||||| || |||||| |||||||||||||||| | | | || | | | |||
Sbjct 513 A-GCTGTATGGGCGTTAGGTAACATTGCTGGTGATTCACCGCAATTCTGT-A-CATATGT 569
Query 823 TCTTGGATGTAGGGCAC-TGCTTCCGCTGCTCAATCAGCTTAATGAGCATGCCAAATTGT 881
|||| |||| |||||| || ||||||| ||||||||||||||| ||||| |||| ||||
Sbjct 570 TCTTAAATGTGGGGCACTTG-TTCCGCTTCTCAATCAGCTTAATTAGCATACCAAGTTGT 628
Query 882 CCATGCTTCGA-AATGCCACATGGACCTTGTCAAACTTCTGTCGTGGCAAGCCTCAGCCT 940
| | |||| || || | ||||||||| ||||||||||| |||||||| | ||| |
Sbjct 629 CTACGCTTAGAGAA-GTCACATGGACTTTGTCAAACTTGTGTCGTGG--TG-GACAGGC- 683
Query 941 CACTTTGACCAGGTGAAACCTGCTCTTCCGGCCCTTGAACGACTAATTCATTCAAATGAT 1000
| | || | | | | | ||| |||||||||||| |||||||||| | ||||
Sbjct 684 GA--AT--CC---CG-CAGC-G-T-TTCAAGCCCTTGAACGATTAATTCATTCTACTGAT 732
Query 1001 GAAGAAGTCTT-GACAGATGCCTGTTGGGCTCTCTCA-TACCTCTCTGATGGGACCAATG 1058
||| ||||||| || | | || |||||||||||| | || || ||| | || ||| |||
Sbjct 733 GAACAAGTCTTGGA-AAAAGCTTGTTGGGCTCTC-AAGTATCTATCTAAAGGAACCGATG 790
Query 1059 ACAAAATCCAGACTGTCATCGAGGCCGGTGTTGTCCCAAGACTTGTTGAACTTCTCCTCC 1118
|||||||||||| ||| |||||||| |||||||| |||||||| ||||||||||| ||||
Sbjct 791 ACAAAATCCAGATTGTTATCGAGGCTGGTGTTGTACCAAGACTCGTTGAACTTCTGCTCC 850
Query 1119 ATCCTTCTCCAT-C-TGTGCTAATTCCTGCACTTCGCACTGTTGGAAATATAGTTACTGG 1176
|||||||| || | ||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 851 ATCCTTCT--ATACATGTGCTAATTCCTGCGCTTCTCACTGTTGGAAATATAGTTACTGG 908
Query 1177 AGATGATTTACAAACACAGTGGGTGATCAATAGTGGTGCTCTACCTTGTCTTGC-CAAC- 1234
| ||||| ||||||| ||||| |||||| | ||||||||| |||||||| || | ||||
Sbjct 909 AAATGATCTACAAACGCAGTGTGTGATCGACAGTGGTGCTTTACCTTGT-TTTCTCAACA 967
Query 1235 TTGCTCACTCAAAACTATAAGAAAAGCATA--AAGAAGGAAGCTTGCTGGACGATTTCAA 1292
|| || ||||| ||||||||| |||| ||| |||||||| ||||| |||||||||||||
Sbjct 968 TT-CTAACTCACAACTATAAG-AAAG-ATATTAAGAAGGATGCTTGTTGGACGATTTCAA 1024
Query 1293 ACATCACAGCAGGCAACA-AAGATCAGATCCAGACGGTAGTTGAGGCTAATTTGATTGCC 1351
||||||| ||||| |||| |||| |||||||||| |||| | ||||||||||||||||
Sbjct 1025 ACATCACTGCAGG-AACACAAGAACAGATCCAGATGGTAATAGAGGCTAATTTGATTGAT 1083
Query 1352 CCGCTGG-TGAGTCTGCTTCAAAATGCTGAATTTGACATTAAGAAAGAAGCTGCATGGGC 1410
||| ||| | | |||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1084 CCGTTGGTTCA-TCTGCTTCAATATGCTGAATTTGACATTAAGAAAGAAGCAGCATGGGC 1142
Query 1411 AATTT-CAAATGCAACTTCAGGTGGTTCTCATGATCAAATCAAACACCTGGTGGAGCAAG 1469
||||| ||| || |||||||||| || | |||||||| |||| |||| ||||||||||
Sbjct 1143 AATTTACAA-TGTAACTTCAGGTTGT-C--ATGATCAAGTCAAGTACCTTGTGGAGCAAG 1198
Query 1470 GATGCATAAAACCATTATGCGACCTCCTAGT-ATGCCCAGATCCAAGAATCATAACGGTG 1528
||||||||| ||| |||||||| || | || ||| ||||||||| |||||||| |
Sbjct 1199 GATGCATAACACCGTTATGCGATCTTTT-GTTATGTGCAGATCCAAAAATCATAATTATC 1257
Query 1529 TGCCTTGAAGGATTGGAAAACATTTTGAAGGTGGGAGAGGCAGAGAAGAACTTGGGTAAC 1588
|||||| ||||||| |||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1258 TGCCTTAAAGGATTAGAAAACATTTTGAAAGTGGGAGAGGCAGAGAAGAACTTAGGTAAT 1317
Query 1589 ACAGGAGACATGAACTATTACGCACAGCTGATTGATGATGCAGAAGGGCTAGAAAAGATT 1648
||||| ||||||||||||||| | | |||||||||||||||| |||||||||||| ||
Sbjct 1318 ACAGGGGACATGAACTATTACACGTACCTGATTGATGATGCAGGAGGGCTAGAAAATAT- 1376
Query 1649 GA-G-AACCTTCAG-AGCCATGACAACAATGAGATCTATGAGAAGGCTGTTAAAA-TTCT 1704
|| | ||| ||||| | ||||||||||| |||||||||||| || ||||| |||| || |
Sbjct 1377 GATGGAAC-TTCAGGA-CCATGACAACAGTGAGATCTATGAAAAAGCTGT-AAAAGTTAT 1433
Query 1705 GGAGACATACTGGCTTGAAGAGGAAGATGATGAGACACA 1743
||||||||| ||| | | ||| |||| ||| ||||||||
Sbjct 1434 GGAGACATATTGGGT-GTAGAAGAAGCTGACGAGACACA 1471
> AT5G49310.1 | Symbols: IMPA-5 | importin alpha isoform 5 | chr5:19992016-19994516
REVERSE LENGTH=1560
Length=1560
Score = 824 bits (446), Expect = 0.0
Identities = 1038/1317 (79%), Gaps = 68/1317 (5%)
Strand=Plus/Plus
Query 445 GTTGGAGAGTTTGCAGGATATGGTCGCTGGGGTTTTGTCCGATGATCCTGCCTTGCAGCT 504
|||||||| | || | ||||| || |||||||||| || ||||||||| | ||||||||
Sbjct 207 GTTGGAGA--TAGC-GAATATGATCACTGGGGTTTTCTCGGATGATCCTTCATTGCAGCT 263
Query 505 TGAGTCCACTACTCAGTTCAGGAAGCTTCTCTCTATT-GAGAGAAGTCCTCC-AATCGAG 562
||||| ||| |||| ||||||| | |||| || ||| || |||||||| || | | ||
Sbjct 264 TGAGTACACAACTCGGTTCAGGGTGGTTCTATC-ATTCGATAGAAGTCCACCTACT-GA- 320
Query 563 GAA-GTGAT-AGCTGCTGGTGTTGTTCCTCGGTTTGTTGAGTTTCTTAAGAAAGAAGATT 620
|| ||||| | | |||| ||||| || || ||||| |||||||||||||| || |||
Sbjct 321 TAATGTGATAAAAT-CTGGAGTTGTGCCACGTTTTGTAGAGTTTCTTAAGAAGGATGATA 379
Query 621 ACCCCGCGATTCAGTTTGAGGCAGCTTGGGCTCTGACAAACATTGCATCTGGAACATCCG 680
|||| | ||||||||||||| ||||||||| | ||||||||||| ||||| |||| |
Sbjct 380 ACCCTAAGCTTCAGTTTGAGGCTGCTTGGGCTTTAACAAACATTGCTTCTGGCGCATCTG 439
Query 681 ATCACACTAAGGTTGTAATCGATCACAATGCTGTTCCAGTCTTTGTACAGCTTCTTGCTT 740
| || || ||||| || || |||||| || ||| ||| ||||||| |||||||||||||
Sbjct 440 AGCATACCAAGGTAGTGATTGATCACGGTGTTGTGCCACTCTTTGTTCAGCTTCTTGCTT 499
Query 741 CCCCTAG-CGATGATGTCCGTGAGCAGGCTGTATGGGCTTTGGGTAACGTTGCTGGTGAT 799
||||| | ||||||||||||||||||||| |||||| ||||||| ||||||||||||
Sbjct 500 CCCCT-GATGATGATGTCCGTGAGCAGGCTATATGGGGACTGGGTAATGTTGCTGGTGAT 558
Query 800 TCACCACGGTGCCGTGATC-TTGTTCTTGGA-TGTAGGGCACTGCTTCCGCTGCT-CAAT 856
||| || ||||||||| | |||||||| | | | ||||| | |||| ||| | | ||
Sbjct 559 TCAATACAGTGCCGTGA-CTTTGTTCTT-AACTCTGGGGCATTTATTCCACTGTTGC-AT 615
Query 857 CAGCTTAATGAGCATGCCAAATTGTCCATGCTTCGAAATGCCACATGGACCTTGTCAAAC 916
||||| ||| | ||||| | |||||| || ||| ||||||| || ||||| || ||||||
Sbjct 616 CAGCTGAATAACCATGCTACATTGTCGATACTTAGAAATGCGACTTGGACTTTATCAAAC 675
Query 917 TTCTGT-CGTGGCAAGCC-TCAGCCTCACTTTGACCAGGTGAAACCTGCTCTTCCGGCCC 974
|||| | ||||||||||| ||| || | |||||||| |||||||| || ||| || | |
Sbjct 676 TTCT-TCCGTGGCAAGCCTTCA-CCACCCTTTGACCTGGTGAAACATGTTCTCCCTGTAC 733
Query 975 TTGAACGACTAATTCATTCAAATGATGAAGAAGTCTTGACAGATGCCTGTTGGGCTCTCT 1034
|| || |||| || |||| |||||||| ||||||||| |||||| || ||||| || |
Sbjct 734 TTAAAAGACTTGTTTATTCGGATGATGAACAAGTCTTGATAGATGCTTGCTGGGCGCTTT 793
Query 1035 C-ATACCTCTCTGATGGGACCAATGACAAA-ATCCAGACTGTCATCGAGGCCGGTGTTGT 1092
| | | || ||||||| | ||||| ||| ||||| | ||| |||||||| ||||||||
Sbjct 794 CGA-ATCTGTCTGATGCTTCAAATGA-AAATATCCAAAGTGTGATCGAGGCGGGTGTTGT 851
Query 1093 CCCAAGACTTGTTGAACTTCTCCTCCATC-CTTCTCCA-TCTGTGCTAATTCCTGCACTT 1150
||||||||| ||||||||||||| || | |||||||| | ||| || |||||||||||
Sbjct 852 CCCAAGACTAGTTGAACTTCTCCAACA-CGCTTCTCCAGT-TGTACTTGTTCCTGCACTT 909
Query 1151 CGCACTG--TTGGAAATATAGTTACTGGAGATGATTTA-CAAACACAGTGGGTGATCAAT 1207
|| || |||| ||||||||| ||||| || | | | || || || || |||||||||
Sbjct 910 CG--TTGCATTGGGAATATAGTTTCTGGAAAT-AGTCAGCAGACTCACTGTGTGATCAAT 966
Query 1208 AGTGGTGCTCTA-CCTTGTCTTGCCAACTTGCTCACTCAAAACTATAAGAAAAGCATAAA 1266
|||||| | || || | |||||| || |||| ||||||||| ||| || | ||||||
Sbjct 967 TGTGGTGTTTTACCCGT-TCTTGCTGACCTGCTTACTCAAAACCATATGAGAGGCATAAG 1025
Query 1267 GAAGGAAGCTTGCTGGACGATTTCAAACATCACAGCAGGCA-ACAAAGATCAGATCCAGA 1325
|| |||||||||||||||||||||||||||||| || || | || || || || |||
Sbjct 1026 GAGGGAAGCTTGCTGGACGATTTCAAACATCACTGCCGGTTTAGAA-GAACAAATTCAGT 1084
Query 1326 CGGT-AGTTGAGGCTAATTTGATTGCCC-CGCTGGTGAGTCTG-CTTCAAAATGCTGAAT 1382
|||| | |||| || ||||||||| || || |||| | |||| | ||| |||||||||
Sbjct 1085 CGGTTA-TTGATGCAAATTTGATT-CCATCGTTGGTCAATCTGGCA-CAACATGCTGAAT 1141
Query 1383 TTGACATTAAGAAAGAAGCTGCATGGGCAATTTCAAATGCAACT-TCAGGTGGTTCTCAT 1441
||||||| |||||||||||| |||||||||||||||||| | | |||||||||| |
Sbjct 1142 TTGACATAAAGAAAGAAGCTATATGGGCAATTTCAAATGCTTCCGTG-GGTGGTTCTCCT 1200
Query 1442 GATCAAATCAAACACCTGGTGGAGCAAGGAT-GCATAAAACCATTATGCGACCTCCTAGT 1500
||||||||||| || |||||||||| | || |||||||| | ||||| ||| |||| ||
Sbjct 1201 AATCAAATCAAATACTTGGTGGAGCA-GAATTGCATAAAAGCTTTATGTGACATCCTGGT 1259
Query 1501 ATGCCCAGATCCAAGAATCATAACGGTGTGC-CTTGAAGGATTGGAAAACATTTTGAAGG 1559
|| ||||||| ||||||||| |||| | || | ||| |||||| ||||||| |
Sbjct 1260 TTGTCCAGATCTAAGAATCATCTTAGTGT-CTCTAGGTGGACTGGAAATGATTTTGATTG 1318
Query 1560 -TGGGAGAGGCAGAGAAGAACTTGGGTAACACAGGAGACATGAACTATTACGCACAGCTG 1618
||| ||||| || |||||| | || | |||| |||||| |||| | || ||
Sbjct 1319 CTGG-AGAGGTGGACAAGAACCT----AA----G-AGACGTGAACTGTTACTCTCAAATG 1368
Query 1619 ATTGATGATGCAGAAGGGCTAGAAAAGATTGAGAACCTT-CAG-AGCCATGACAACAATG 1676
||||| |||||||||||||||||||||||||||||| || ||| | ||||| ||||||||
Sbjct 1369 ATTGAAGATGCAGAAGGGCTAGAAAAGATTGAGAAC-TTGCAGCA-CCATGGCAACAATG 1426
Query 1677 AGATCTATGAGAAGGCTGTTAAAATTCTGGAGACATACTGGCTTGAAGAGGAAGATG 1733
||||||| ||||||||||| || |||||| | |||||| |||||| |||||||||||
Sbjct 1427 AGATCTACGAGAAGGCTGTGAAGATTCTGCAAACATACGGGCTTGTAGAGGAAGATG 1483
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108784581015
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5