BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477988
Length=691
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06730.1 | Symbols: TRX P, TRX z | Thioredoxin z | chr3:2124... 1009 0.0
> AT3G06730.1 | Symbols: TRX P, TRX z | Thioredoxin z | chr3:2124217-2126142
FORWARD LENGTH=908
Length=908
Score = 1009 bits (546), Expect = 0.0
Identities = 594/618 (96%), Gaps = 0/618 (0%)
Strand=Plus/Plus
Query 1 TCTAAAACCCGTAAAAAGCGAAAACTGAAATCATTTAGCAGTAGTAATCGATTTCCGAAA 60
|||||||||| | |||||| |||||||||||||||| | || || ||||||||||| |||
Sbjct 1 TCTAAAACCCCTCAAAAGCTAAAACTGAAATCATTTTGAAGCAGAAATCGATTTCCAAAA 60
Query 61 TGGCTCTTGTTCAATCCAGAACTCTTCCACATCTCAACGCTCCGTTGTCGCCGATTCTAT 120
||||||||||||||||||||||| ||||||| |||||| ||||||| |||||||||||||
Sbjct 61 TGGCTCTTGTTCAATCCAGAACTTTTCCACACCTCAACACTCCGTTATCGCCGATTCTAT 120
Query 121 CCTCCCTCCATGCTCCGTCTTCTCTCTTTCTCCGGAGGGAAATCCGACCGGTAGCCTCGC 180
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 121 CCTCCCTCCATGCTCCGTCTTCTCTCTTTATCCGGAGGGAAATCCGACCGGTAGCCGCGC 180
Query 181 CGTTCTCCTCCTCCACTGCCGGAAAGTTGCCCTTCTCGCCGTTGACGCGTCCGCGGAAGC 240
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 181 CGTTCTCCTCCTCCACCGCCGGAAACTTGCCCTTCTCGCCGTTGACGCGTCCGCGAAAGC 240
Query 241 TTCTCTGTCCTCCGCCTCGCGGAAAGTTTGTCAGAGAAGATTATCTTGTGAAGAAATTGT 300
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 241 TTCTCTGTCCTCCGCCTCGCGGCAAGTTTGTCAGAGAAGATTATCTTGTGAAGAAATTGT 300
Query 301 CAGCTCAAGAACTTCAAGAACTGGTGAAAGGAGATAGGAAGGTGCCGTTGATTGTTGATT 360
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CAGCTCAAGAACTTCAGGAACTGGTGAAAGGAGATAGGAAGGTGCCGTTGATTGTTGATT 360
Query 361 TTTATGCGACATGGTGCGGACCTTGTATCTTGATGGCCCAGGAACTAGAAATGCTTGCAG 420
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTTATGCGACATGGTGTGGACCTTGTATCTTGATGGCCCAGGAACTAGAAATGCTTGCAG 420
Query 421 TAGAGTATGAGAGCAATGCAATAATCGTGAAAGTCGATACAGATGATGAGTACGAGTTTG 480
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 421 TAGAGTATGAGAGCAATGCAATAATCGTGAAAGTTGATACAGATGATGAGTACGAGTTTG 480
Query 481 CACGCGACATGCAGGTTCGAGGCTTACCTACATTATTCTTCATCAGTCCTGATCCAAGCA 540
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 481 CACGCGACATGCAGGTTCGAGGGTTACCTACATTATTCTTCATCAGTCCTGACCCAAGCA 540
Query 541 AAGATGCAATCAGGACAGAAGGGCTAATTCCATTACAGATGATGCACGATATCATTGACA 600
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 541 AAGATGCAATCAGGACAGAAGGGCTAATTCCGTTACAGATGATGCACGATATCATTGACA 600
Query 601 ACGAGATGTGAAGTTTTT 618
||||||||||||||||||
Sbjct 601 ACGAGATGTGAAGTTTTT 618
Score = 111 bits (60), Expect = 7e-24
Identities = 70/75 (93%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 617 TTTGAATAGAATCGCCGTAATTTAGGATTGGTACCGAGTTGTTTGCATTTGATATGTGGT 676
||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 649 TTTGATTAGAATCGCCGTAATTTAGGATTGGTACCGTGTTGTTTGCATTTGAGATGTGGT 708
Query 677 AAGAACGTCATCTAG 691
||||| ||| |||||
Sbjct 709 AAGAATGTCTTCTAG 723
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33455941902
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5