BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477989
Length=863
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06740.1 | Symbols: GATA15 | GATA transcription factor 15 | ... 1077 0.0
> AT3G06740.1 | Symbols: GATA15 | GATA transcription factor 15
| chr3:2126414-2127467 FORWARD LENGTH=896
Length=896
Score = 1077 bits (583), Expect = 0.0
Identities = 808/906 (89%), Gaps = 57/906 (6%)
Strand=Plus/Plus
Query 1 GGTATCTGTTGGGTCGTTCGTTTCTTTGAAAT---TaaaaaaaTAtctctgtttctctga 57
|||||||||| || | ||||||||||||||| ||||||| ||||||||||||||||
Sbjct 3 GGTATCTGTT-GG--G-TCGTTTCTTTGAAATCAAAAAAAAAAAATCTCTGTTTCTCTGA 58
Query 58 cactctctctctctgtttctACTTTCAAGATTCAAATTTTTGTTTCCCCTGATCCACTCG 117
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 59 CACTCTCTCTCTCTGTTTCTACTTTCAAGATTCAAATTTTTG-TTCCCCTGATCCACTCG 117
Query 118 TCTTTGAA-T-TCAT--A-TC-----TGTTTCTTGCC-ACTCTGATCTCTATTTGAAACC 166
|||||||| | |||| | || ||||||||||| |||||||||||||| ||||||
Sbjct 118 TCTTTGAATTCTCATCAAGTCTTATATGTTTCTTGCCTACTCTGATCTCTATCGGAAACC 177
Query 167 CTAGATCCATATCTTCTCCACTTGACACTAG-T------TCACGATCTGCGGTTCTCCGA 219
||||||||||||||||| |||||||||||| | |||||||||||||||| | ||
Sbjct 178 CTAGATCCATATCTTCTTGACTTGACACTAGTTCACGAATCACGATCTGCGGTTC-CTGA 236
Query 220 AGCTGGTAATGCTAGATCCTACCGAGAAAACAGTTATCGATTCAGAGGCCATGGAAAGCA 279
||||||||||||||||||| |||||| || ||| ||||||||||| | ||||||||||
Sbjct 237 AGCTGGTAATGCTAGATCCCACCGAG--AA-AGTAATCGATTCAGAATCAATGGAAAGCA 293
Query 280 AACTCACATCAGTAGATGCGATCGAAGAACACAGCAGCAGTAGTAGCAGTAATGAAGGTA 339
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 294 AACTCACATCAGTAGATGCGATCGAAGAACACAGCAGC---AGTAGCAGTAATGAAGCTA 350
Query 340 TCAGCAACGAGAAGAAGAGTTGTGCCATTTGTGGTACTAGCAAAACCCCTCTTTGGCGAG 399
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 351 TCAGCAACGAGAAGAAGAGTTGTGCCATTTGTGGTACCAGCAAAACCCCTCTTTGGCGAG 410
Query 400 GCGGTCCCGCCGGTCCCAAGTCGCTATGTAACGCATGCGGGATCCGAAACAGgaagaaga 459
||||||| ||||||||||||||||| |||||||||||||||||| ||||||| ||||| |
Sbjct 411 GCGGTCCTGCCGGTCCCAAGTCGCTTTGTAACGCATGCGGGATCAGAAACAGAAAGAAAA 470
Query 460 gaagaacactgatctcaaatagatcagaagataagaagaagaagaatcataacagaaATC 519
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 471 GAAGAACACTGATCTCAAATAGATCAGAAGATAAGAAGAAGAAGAGTCATAACAGAAACC 530
Query 520 CAAAGTTCGGTGACTCGTTGAAGCAGAGACTAATGGAATTGGGGAGAGAAGTGATGATGC 579
| ||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 531 CGAAGTTTGGTGACTCGTTGAAGCAGCGATTAATGGAATTGGGGAGAGAAGTGATGATGC 590
Query 580 AGCGATCAACGGCTGAGAATCAACGACGGAAGAAGCTCGGCGAAGAAGAGCAAGCCGCTG 639
||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||| |
Sbjct 591 AGCGATCAACGGCTGAGAATCAACGGCGGAATAAGCTTGGCGAAGAAGAGCAAGCCGCCG 650
Query 640 TGTTACTCATGGCTCTCTCTTATGCTTCTTCCGTTTATGCTTAACGAATTTTCTGGATCT 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 TGTTACTCATGGCTCTCTCTTATGCTTCTTCCGTTTATGCTTAACGAATTTTCTGGATCT 710
Query 700 TTACCTTAAAGTTTTCAGGTGA-AATAAATTTTGTAGGAtgtgtaacgaattaatgtgta 758
| | || ||| | | | | ||| |||||||||||||||||||||||||||||||||
Sbjct 711 TAAGTTTTAAGGTGAAA--TAATAATTAATTTTGTAGGATGTGTAACGAATTAATGTGTA 768
Query 759 atttttgt--g--tt-----g-t-ttg----aattaactaaattttgaaatttttgtATC 803
|||||||| | || | | ||| |||||||||||||||||||||||||||||
Sbjct 769 ATTTTTGTATGCGTTTTTTTGGTGTTGTTTGAATTAACTAAATTTTGAAATTTTTGTATC 828
Query 804 TGGTTTATGTGATCT--GGTGAAGAATGAATGAATGAA--A--GGTCAAGATGATTTTCT 857
| ||||||||||||| ||||||||||||||||||||| | |||||| ||||||||||
Sbjct 829 TTGTTTATGTGATCTCTGGTGAAGAATGAATGAATGAATGAAAGGTCAAAATGATTTTCT 888
Query 858 TCCGAC 863
||||||
Sbjct 889 TCCGAC 894
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42096215186
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5