BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477991
Length=966
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06760.2 | Symbols: | Drought-responsive family protein | c... 841 0.0
> AT3G06760.2 | Symbols: | Drought-responsive family protein |
chr3:2132758-2134556 FORWARD LENGTH=1119
Length=1119
Score = 841 bits (455), Expect = 0.0
Identities = 529/564 (94%), Gaps = 7/564 (1%)
Strand=Plus/Plus
Query 406 GGAGAAGGTTGCGAAGAGGAGGATATAGCTCTACCTATCTTGCCTTGAAAAAGGAACTCC 465
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 560 GGAGAAGGTTGCGAAGAGGAGGATATAGCTCTACCTATCTCGCCTTGAAAAAGGAACTCC 619
Query 466 GAGAAGCAAACTTACAGTCTCTTCTTGGTGGATCGTCAAGTTTCACTTCTTCAACCAATA 525
| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 620 GGGAAGCAAACCTACAGTCTCTTCTTGGTGGATCTTCAAGTTTCACTTCTTCAACCAATA 679
Query 526 TCGATTCTGATCCGCTGCTGTCATCCTTTATGTTTAATTCTTCTTCAGTGAATGAGTCTG 585
|||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 680 TCGATTCTGATCCGTTGCTGTCATCCTTTATGTTTAATTCTCCTTCAGTGAACCAGTCTG 739
Query 586 CaaaaaaaTCTGCTACACCTGTGACGGTAGGAAACGCGGCTACGAAAGTCTCGATTAAGG 645
|||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 740 CAAACAAATCTGCTACACCTGTGACTGTAGGAAACGCGGCTACAAAAGTCTCGATTAAGG 799
Query 646 AATCTCTCAAAAGAGACATTCAAGAAGCTCCACTTTCAGGTGAAGATCAAGAGAAGGCGA 705
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 800 AATCTCTCAAAAGAGACATTCAAGAAGCTCCACTTTCAGGTGAAGATCAGGAGAAGGCGA 859
Query 706 AAAAGAGTGAGTTTGTGGGAGGTTTGTTGTTGTCAACCATGCTTGGAGACGATTTCTAAA 765
||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||
Sbjct 860 AAAAGAGTGAGTTTGTGCGAGGCTTGTTGTTGTCAACCATGCTTGAAGACGATTTCTAA- 918
Query 766 TTTCACGTTA-AA-TCCCTTGCCTTGTTGTGGTTGATGCATGAGACGTAAGGAATCGGAG 823
|||| ||||| || ||| ||||||||||||||||| |||||||||| | |||| || ||
Sbjct 919 TTTCTCGTTATAAATCCATTGCCTTGTTGTGGTTGGTGCATGAGACTTGAGGA-TCTCAG 977
Query 824 GTTGGAATTGTTAGGAGTGGTCTCAATGTATAATGCAAAA-ACCTTGTAAGTTATAAGGG 882
||||||||||||||||||||| ||||||||| |||||||| | |||||||||||||| |
Sbjct 978 GTTGGAATTGTTAGGAGTGGTTTCAATGTATGATGCAAAATA--TTGTAAGTTATAAGAG 1035
Query 883 GATGCAGAGTTGCATCCATATATTATTGTCATTTGTACCTTGGAACCTTTATGTGCATAA 942
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1036 GATGCAGAGTTGCATCCATATATAATTGTCATTTGTACCTTGGAACCTTTATGTGCATAA 1095
Query 943 GCGGAAACAGAGTATTTTCCTTTC 966
||||||||||||| |||||||||
Sbjct 1096 CCGGAAACAGAGTACTTTCCTTTC 1119
Score = 520 bits (281), Expect = 1e-146
Identities = 307/319 (96%), Gaps = 3/319 (1%)
Strand=Plus/Plus
Query 1 TCTCTCTCTCTACCGTCCTTCTAGGGTTTCTTTGATCACATTCAAATTTGTCTCCTTTAA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 128 TCTCTCTCTCTACCGTCCTTCTAGGGTTTCTTTGATCACATTCAAATTTGTCGCCTTTAA 187
Query 61 TCTCAATCCTGTAACAATCAGAGGATATGGATTCCAATTCATGGATCAATTGTCCCTCTG 120
|||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||
Sbjct 188 TCTCAATCCTGTAAGAATCAGAGGATATGGATTCCAA-T--TGGATCAATTGTCCCTCTG 244
Query 121 TTTTCTCTTCATCCTCTTCTTCTTCGAGACGGTGTCAATCCCGATCAGATTTGTATTTAG 180
||||||| ||||||||||||||||| ||||| ||||||||||||||||| ||||||||||
Sbjct 245 TTTTCTCCTCATCCTCTTCTTCTTCCAGACGCTGTCAATCCCGATCAGACTTGTATTTAG 304
Query 181 GAGGAGGGTACGAGGATCTTGAAGGAGAAGACGATTTGAAGGCAGAGTTTATATGCCCCT 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 305 GAGGAGGGTACGAGGATCTTGAAGGAGAAGACGATTTGAAGGCAGAGTTTATATGCCCTT 364
Query 241 TTTGCGCTGAAGATTTTGACATTGTTGGGCTTTGTTGTCACATTGATGAAGAACATCCTG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 TTTGCGCTGAAGATTTTGACATTGTTGGGCTTTGTTGTCACATTGATGAAGAACATCCTG 424
Query 301 TCGAAGCCAAGAACGGGGT 319
| ||||||||||| |||||
Sbjct 425 TTGAAGCCAAGAATGGGGT 443
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47270332327
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5