BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477994
Length=1694
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06770.2 | Symbols: | Pectin lyase-like superfamily protein... 2531 0.0
AT5G49215.1 | Symbols: | Pectin lyase-like superfamily protein... 95.3 2e-18
> AT3G06770.2 | Symbols: | Pectin lyase-like superfamily protein
| chr3:2134800-2137228 REVERSE LENGTH=1855
Length=1855
Score = 2531 bits (1370), Expect = 0.0
Identities = 1600/1708 (94%), Gaps = 27/1708 (2%)
Strand=Plus/Plus
Query 1 TCTTTTATTATCCGACAGCATCGTTACAAATAAAGATGTCAGTGGTAATAATCTTGATAC 60
||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 161 TCTTTAATTATCCGACAGCTTCGTTACAAATAAAGATGTCAGTGGTAACAATCTTGATAC 220
Query 61 TGGCATTAACCAGTCTGATTCCGATTTACGCAAAAGTTCTCGGCGCCGGGAAAATATGCG 120
|||||||||||||| | ||||| ||||||||||| |||| ||||||||||||||||||||
Sbjct 221 TGGCATTAACCAGTGTTATTCCCATTTACGCAAACGTTCACGGCGCCGGGAAAATATGCG 280
Query 121 ACGAACTTGGCCGGATATCATTGAGTACAAGACCACACAGTGTCTCCATTACAGATTTTG 180
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 281 ACGAACTTGGCCGGCGATCATTGAGTACAAGACCACACAGTGTCTCCATTACAGATTTTG 340
Query 181 GAGCTGTGGGAGATGGCAAAACGCTCAACACTCTTGCGTTTCAAAACGCCGTTTTCTATC 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 341 GAGCTGTTGGAGATGGCAAAACGCTCAACACTCTTGCGTTTCAAAACGCCGTTTTCTATC 400
Query 241 TTATGTCTTTCGCCGACAAAGGTGGAGCCCAGCTTTATGTCCCGCCGGGAAATTGGCTCA 300
||||||||||||||||||||||||| |||||||| ||||| ||||||||| |||||||||
Sbjct 401 TTATGTCTTTCGCCGACAAAGGTGGGGCCCAGCTCTATGTTCCGCCGGGACATTGGCTCA 460
Query 301 CCGGTAGTTTCAGCCTCACCAGCCATCTCACTCTTTTTCTCGAAAACGGCGCCGTTATAG 360
|||| ||||| |||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 461 CCGGGAGTTTTAGCCTCACCAGCCACCTCACTCTCTTTCTCGAAAACGGCGCCGTTATAG 520
Query 361 TCGCCTCTCAGGATCCATCGCATTGGGAAGTTGTTGATCCCTTACCTTCGTACGGAAGGG 420
|||| |||||||||||||||||||||||||| |||||||| |||||||| ||||||||||
Sbjct 521 TCGCTTCTCAGGATCCATCGCATTGGGAAGTGGTTGATCCTTTACCTTCATACGGAAGGG 580
Query 421 GAACTGATTTGCCTGGGAAGCGATACAAGAGTTTGATCAACGGTAACATGCTACATGATG 480
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 581 GAATTGATTTGCCTGGGAAGCGATACAAGAGTTTGATCAACGGTAACAAGCTACATGATG 640
Query 481 TTGTTGTAACAGGTGATAATGGAACCATAGATGGTCAAGGCTTGGTTTGGTGGGATCGGT 540
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 641 TTGTTGTAACAGGTGATAATGGAACTATAGATGGTCAAGGCTTGGTTTGGTGGGATCGGT 700
Query 541 TTACTTCTCATTCCTTAAAGTATAACCGTCCTCACCTCATCGAGTTTCTTTCTTCTAAAA 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 701 TTACTTCTCATTCCTTAAAGTATAACCGTCCTCACCTCATCGAGTTTCTTTCTTCTGAAA 760
Query 601 ATGTAATTGTCTCCAATCTTACGTTCTTGAATGCTCCAGCTTATACAATCCATTCAATCT 660
||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||
Sbjct 761 ATGTAATTGTCTCCAATCTTACGTTCTTGAATGCTCCTGCTTATTCAATCTATTCAATCT 820
Query 661 ACTCTAGCCATGTATATATTCATAAGATATTGGCTCATTCTCCTCCCGAATCTCCTTATA 720
|||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||
Sbjct 821 ACTCTAGCCATGTATATATTCATAAGATATTGGCCCATTCTTCTCCTAAATCTCCTTATA 880
Query 721 CAATCGGTATAGTACCAGATTCTTCTAATTACGTCTGCATCCAAAACTCTACCATTAACG 780
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 881 CAATCGGTATTGTACCAGATTCTTCTGATTACGTCTGCATCCAAAACTCTACCATTAACG 940
Query 781 TGGGGTATGACGCCATCTCCCTCAAAAGCGGTTGGGATGAATATGGAATTGCCTATTCTC 840
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 941 TGGGGTATGACGCGATTTCCCTCAAAAGCGGTTGGGATGAATATGGAATTGCCTATTCTC 1000
Query 841 GTCCCACTGAAAATGTTCATATAAGAAATGTGTACCTTCGAGGAGCTTCTGGTTCGTCTA 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1001 GTCCCACTGAAAATGTTCATATAAGAAATGTGTACCTTCGAGGAGCTTCTGGTTCCTCTA 1060
Query 901 TTTCCTTTGGCAGTGAAATGTCTGGTGGAATATCTGATGTCGTGGTCGATAATACCCATA 960
| |||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||
Sbjct 1061 TCTCCTTTGGCAGTGAAATGTCTGGTGGAATATCTGATGTCGTGGTTGATAACGCTCATA 1120
Query 961 TACACAACTCGTTAACCGGCATTGCCTTTAGAACCACAAAAGGCAGAGGTGGTTACATCA 1020
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1121 TACACTACTCGTTAACCGGCATTGCCTTTAGAACCACAAAAGGCAGAGGTGGTTATATCA 1180
Query 1021 AAGAGATCGATATTGCAAACATCGATATGTCT-AGAATAGGTACTGCCATTGTGGCTAAT 1079
|||||||||||||| ||||||||||||||| | |||||||||||||||||||| ||||||
Sbjct 1181 AAGAGATCGATATTTCAAACATCGATATGT-TGAGAATAGGTACTGCCATTGTTGCTAAT 1239
Query 1080 GGTAGCTTTGGATCTCACCCGGATGATAAATATGACGCAAATGCTCTCCCTCTTGTGAGT 1139
|||||||||||||||||||| |||||||||||||| | ||||||||||| |||||||||
Sbjct 1240 GGTAGCTTTGGATCTCACCCTGATGATAAATATGATGTGAATGCTCTCCCACTTGTGAGT 1299
Query 1140 CACATAAGATTAAGCAACATTTCTGGAGAAAACATCGGCATTGCGGGGAAACTGTTTGGG 1199
||||| ||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||
Sbjct 1300 CACATCAGATTAAGCAACATTTCTGGAGAGAACATTGGCATTGCGGGGAAATTGTTTGGG 1359
Query 1200 ATCAAAGAATCTCCATTTAGCTCAGTGGCTTTGTGGAATATCTCTTTGTCGATGAGCTCA 1259
||||||||||||||||||||||||||| |||||| |||| | ||||||||||||||||||
Sbjct 1360 ATCAAAGAATCTCCATTTAGCTCAGTGACTTTGTCGAATGTTTCTTTGTCGATGAGCTCA 1419
Query 1260 GGTTCTTCGGTTTCTTGGCAATGCTCCTACGTTTACGGGTCCTCAGAGTCAGTCATACCT 1319
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1420 GGTTCTTCTGTTTCTTGGCAATGCTCCTACGTTTACGGGTCCTCGGAGTCAGTCATTCCT 1479
Query 1320 GAACCTTGTCCCGAGCTGAAAAGAGATGATGATGCTTACGGTAGAGCTGCAGTCTAATGA 1379
||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||| |||
Sbjct 1480 GAACCGTGTCCCGAGCTGAAGAGAGATGCTGATGCTTACGGTAGAGCTGCAGTCTAGTGA 1539
Query 1380 TACAGACTGCaaaa-aaaaaaG----------CAAGAA-CTTTTCTTGGGATTCTTTCAT 1427
||||||||||||| ||||||| |||||| | |||||||||||||||| ||
Sbjct 1540 AACAGACTGCAAAAGAAAAAAGAAAAAAAAAGCAAGAAACATTTCTTGGGATTCTTTGAT 1599
Query 1428 AAGATTCAATTCATCAATCATT-CATATTTTGCGGAGTTAGAAAAGGTCAGATTCTTTCC 1486
| |||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||
Sbjct 1600 AGGATTCAATTCATCAATCATTTCATATTTTGTGGAGTTAGAGAAGGTCAGATTCTTTCC 1659
Query 1487 TCAAGTAAACCACATTGTCTTTAGATCATACATGTTCCTTTTGGTTATTCTGGTTTATTA 1546
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1660 TCAAGTAAACCACATTGTCTTTAGATCATACATGTTCCTTTCGGTTATTCTGGTTTCCTA 1719
Query 1547 TTTTTATTTTATCTTGTTTGCATATTGTGAGATAAGAAATCTGTACAGGTTCATTTCTTC 1606
||||||| || ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1720 TTTTTATGTT-----GTTTGCATATTCTGAGATAAGAAATCTGTACAGGTTCATTTCTTC 1774
Query 1607 ATTCATGTGTAAACAAAGAAATTTTGTTTGAGCAGTTTTCCACATGCCGTGATTAATTAA 1666
||||||||||||||||||||||||||||| |||||||||||||| ||| |||||| ||
Sbjct 1775 ATTCATGTGTAAACAAAGAAATTTTGTTTCAGCAGTTTTCCACAAGCC---ATTAAT-AA 1830
Query 1667 AATAAAAAGGGAGAGATAGTTTCATTTT 1694
|||||||| |||||||||||||||||
Sbjct 1831 --TAAAAAGG-AGAGATAGTTTCATTTT 1855
> AT5G49215.1 | Symbols: | Pectin lyase-like superfamily protein
| chr5:19953487-19956116 FORWARD LENGTH=1775
Length=1775
Score = 95.3 bits (51), Expect = 2e-18
Identities = 66/73 (90%), Gaps = 2/73 (3%)
Strand=Plus/Plus
Query 1563 TTTGCATATTGTGAGA-TAAGAAATC-TGTACAGGTTCATTTCTTCATTCATGTGTAAAC 1620
|||||| |||||||| ||| | ||| ||||||||||||||||||||||||||||||| |
Sbjct 1672 TTTGCAGCTTGTGAGATTAATATATCTTGTACAGGTTCATTTCTTCATTCATGTGTAACC 1731
Query 1621 AAAGAAATTTTGT 1633
|||||||||||||
Sbjct 1732 AAAGAAATTTTGT 1744
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83734509060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5