BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477994 Length=1694 Score E Sequences producing significant alignments: (Bits) Value AT3G06770.2 | Symbols: | Pectin lyase-like superfamily protein... 2531 0.0 AT5G49215.1 | Symbols: | Pectin lyase-like superfamily protein... 95.3 2e-18 > AT3G06770.2 | Symbols: | Pectin lyase-like superfamily protein | chr3:2134800-2137228 REVERSE LENGTH=1855 Length=1855 Score = 2531 bits (1370), Expect = 0.0 Identities = 1600/1708 (94%), Gaps = 27/1708 (2%) Strand=Plus/Plus Query 1 TCTTTTATTATCCGACAGCATCGTTACAAATAAAGATGTCAGTGGTAATAATCTTGATAC 60 ||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||| Sbjct 161 TCTTTAATTATCCGACAGCTTCGTTACAAATAAAGATGTCAGTGGTAACAATCTTGATAC 220 Query 61 TGGCATTAACCAGTCTGATTCCGATTTACGCAAAAGTTCTCGGCGCCGGGAAAATATGCG 120 |||||||||||||| | ||||| ||||||||||| |||| |||||||||||||||||||| Sbjct 221 TGGCATTAACCAGTGTTATTCCCATTTACGCAAACGTTCACGGCGCCGGGAAAATATGCG 280 Query 121 ACGAACTTGGCCGGATATCATTGAGTACAAGACCACACAGTGTCTCCATTACAGATTTTG 180 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 281 ACGAACTTGGCCGGCGATCATTGAGTACAAGACCACACAGTGTCTCCATTACAGATTTTG 340 Query 181 GAGCTGTGGGAGATGGCAAAACGCTCAACACTCTTGCGTTTCAAAACGCCGTTTTCTATC 240 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 341 GAGCTGTTGGAGATGGCAAAACGCTCAACACTCTTGCGTTTCAAAACGCCGTTTTCTATC 400 Query 241 TTATGTCTTTCGCCGACAAAGGTGGAGCCCAGCTTTATGTCCCGCCGGGAAATTGGCTCA 300 ||||||||||||||||||||||||| |||||||| ||||| ||||||||| ||||||||| Sbjct 401 TTATGTCTTTCGCCGACAAAGGTGGGGCCCAGCTCTATGTTCCGCCGGGACATTGGCTCA 460 Query 301 CCGGTAGTTTCAGCCTCACCAGCCATCTCACTCTTTTTCTCGAAAACGGCGCCGTTATAG 360 |||| ||||| |||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct 461 CCGGGAGTTTTAGCCTCACCAGCCACCTCACTCTCTTTCTCGAAAACGGCGCCGTTATAG 520 Query 361 TCGCCTCTCAGGATCCATCGCATTGGGAAGTTGTTGATCCCTTACCTTCGTACGGAAGGG 420 |||| |||||||||||||||||||||||||| |||||||| |||||||| |||||||||| Sbjct 521 TCGCTTCTCAGGATCCATCGCATTGGGAAGTGGTTGATCCTTTACCTTCATACGGAAGGG 580 Query 421 GAACTGATTTGCCTGGGAAGCGATACAAGAGTTTGATCAACGGTAACATGCTACATGATG 480 ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 581 GAATTGATTTGCCTGGGAAGCGATACAAGAGTTTGATCAACGGTAACAAGCTACATGATG 640 Query 481 TTGTTGTAACAGGTGATAATGGAACCATAGATGGTCAAGGCTTGGTTTGGTGGGATCGGT 540 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 641 TTGTTGTAACAGGTGATAATGGAACTATAGATGGTCAAGGCTTGGTTTGGTGGGATCGGT 700 Query 541 TTACTTCTCATTCCTTAAAGTATAACCGTCCTCACCTCATCGAGTTTCTTTCTTCTAAAA 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 701 TTACTTCTCATTCCTTAAAGTATAACCGTCCTCACCTCATCGAGTTTCTTTCTTCTGAAA 760 Query 601 ATGTAATTGTCTCCAATCTTACGTTCTTGAATGCTCCAGCTTATACAATCCATTCAATCT 660 ||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||| Sbjct 761 ATGTAATTGTCTCCAATCTTACGTTCTTGAATGCTCCTGCTTATTCAATCTATTCAATCT 820 Query 661 ACTCTAGCCATGTATATATTCATAAGATATTGGCTCATTCTCCTCCCGAATCTCCTTATA 720 |||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||| Sbjct 821 ACTCTAGCCATGTATATATTCATAAGATATTGGCCCATTCTTCTCCTAAATCTCCTTATA 880 Query 721 CAATCGGTATAGTACCAGATTCTTCTAATTACGTCTGCATCCAAAACTCTACCATTAACG 780 |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 881 CAATCGGTATTGTACCAGATTCTTCTGATTACGTCTGCATCCAAAACTCTACCATTAACG 940 Query 781 TGGGGTATGACGCCATCTCCCTCAAAAGCGGTTGGGATGAATATGGAATTGCCTATTCTC 840 ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 941 TGGGGTATGACGCGATTTCCCTCAAAAGCGGTTGGGATGAATATGGAATTGCCTATTCTC 1000 Query 841 GTCCCACTGAAAATGTTCATATAAGAAATGTGTACCTTCGAGGAGCTTCTGGTTCGTCTA 900 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1001 GTCCCACTGAAAATGTTCATATAAGAAATGTGTACCTTCGAGGAGCTTCTGGTTCCTCTA 1060 Query 901 TTTCCTTTGGCAGTGAAATGTCTGGTGGAATATCTGATGTCGTGGTCGATAATACCCATA 960 | |||||||||||||||||||||||||||||||||||||||||||| ||||| | |||| Sbjct 1061 TCTCCTTTGGCAGTGAAATGTCTGGTGGAATATCTGATGTCGTGGTTGATAACGCTCATA 1120 Query 961 TACACAACTCGTTAACCGGCATTGCCTTTAGAACCACAAAAGGCAGAGGTGGTTACATCA 1020 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1121 TACACTACTCGTTAACCGGCATTGCCTTTAGAACCACAAAAGGCAGAGGTGGTTATATCA 1180 Query 1021 AAGAGATCGATATTGCAAACATCGATATGTCT-AGAATAGGTACTGCCATTGTGGCTAAT 1079 |||||||||||||| ||||||||||||||| | |||||||||||||||||||| |||||| Sbjct 1181 AAGAGATCGATATTTCAAACATCGATATGT-TGAGAATAGGTACTGCCATTGTTGCTAAT 1239 Query 1080 GGTAGCTTTGGATCTCACCCGGATGATAAATATGACGCAAATGCTCTCCCTCTTGTGAGT 1139 |||||||||||||||||||| |||||||||||||| | ||||||||||| ||||||||| Sbjct 1240 GGTAGCTTTGGATCTCACCCTGATGATAAATATGATGTGAATGCTCTCCCACTTGTGAGT 1299 Query 1140 CACATAAGATTAAGCAACATTTCTGGAGAAAACATCGGCATTGCGGGGAAACTGTTTGGG 1199 ||||| ||||||||||||||||||||||| ||||| ||||||||||||||| |||||||| Sbjct 1300 CACATCAGATTAAGCAACATTTCTGGAGAGAACATTGGCATTGCGGGGAAATTGTTTGGG 1359 Query 1200 ATCAAAGAATCTCCATTTAGCTCAGTGGCTTTGTGGAATATCTCTTTGTCGATGAGCTCA 1259 ||||||||||||||||||||||||||| |||||| |||| | |||||||||||||||||| Sbjct 1360 ATCAAAGAATCTCCATTTAGCTCAGTGACTTTGTCGAATGTTTCTTTGTCGATGAGCTCA 1419 Query 1260 GGTTCTTCGGTTTCTTGGCAATGCTCCTACGTTTACGGGTCCTCAGAGTCAGTCATACCT 1319 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 1420 GGTTCTTCTGTTTCTTGGCAATGCTCCTACGTTTACGGGTCCTCGGAGTCAGTCATTCCT 1479 Query 1320 GAACCTTGTCCCGAGCTGAAAAGAGATGATGATGCTTACGGTAGAGCTGCAGTCTAATGA 1379 ||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||| ||| Sbjct 1480 GAACCGTGTCCCGAGCTGAAGAGAGATGCTGATGCTTACGGTAGAGCTGCAGTCTAGTGA 1539 Query 1380 TACAGACTGCaaaa-aaaaaaG----------CAAGAA-CTTTTCTTGGGATTCTTTCAT 1427 ||||||||||||| ||||||| |||||| | |||||||||||||||| || Sbjct 1540 AACAGACTGCAAAAGAAAAAAGAAAAAAAAAGCAAGAAACATTTCTTGGGATTCTTTGAT 1599 Query 1428 AAGATTCAATTCATCAATCATT-CATATTTTGCGGAGTTAGAAAAGGTCAGATTCTTTCC 1486 | |||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||| Sbjct 1600 AGGATTCAATTCATCAATCATTTCATATTTTGTGGAGTTAGAGAAGGTCAGATTCTTTCC 1659 Query 1487 TCAAGTAAACCACATTGTCTTTAGATCATACATGTTCCTTTTGGTTATTCTGGTTTATTA 1546 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 1660 TCAAGTAAACCACATTGTCTTTAGATCATACATGTTCCTTTCGGTTATTCTGGTTTCCTA 1719 Query 1547 TTTTTATTTTATCTTGTTTGCATATTGTGAGATAAGAAATCTGTACAGGTTCATTTCTTC 1606 ||||||| || ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1720 TTTTTATGTT-----GTTTGCATATTCTGAGATAAGAAATCTGTACAGGTTCATTTCTTC 1774 Query 1607 ATTCATGTGTAAACAAAGAAATTTTGTTTGAGCAGTTTTCCACATGCCGTGATTAATTAA 1666 ||||||||||||||||||||||||||||| |||||||||||||| ||| |||||| || Sbjct 1775 ATTCATGTGTAAACAAAGAAATTTTGTTTCAGCAGTTTTCCACAAGCC---ATTAAT-AA 1830 Query 1667 AATAAAAAGGGAGAGATAGTTTCATTTT 1694 |||||||| ||||||||||||||||| Sbjct 1831 --TAAAAAGG-AGAGATAGTTTCATTTT 1855 > AT5G49215.1 | Symbols: | Pectin lyase-like superfamily protein | chr5:19953487-19956116 FORWARD LENGTH=1775 Length=1775 Score = 95.3 bits (51), Expect = 2e-18 Identities = 66/73 (90%), Gaps = 2/73 (3%) Strand=Plus/Plus Query 1563 TTTGCATATTGTGAGA-TAAGAAATC-TGTACAGGTTCATTTCTTCATTCATGTGTAAAC 1620 |||||| |||||||| ||| | ||| ||||||||||||||||||||||||||||||| | Sbjct 1672 TTTGCAGCTTGTGAGATTAATATATCTTGTACAGGTTCATTTCTTCATTCATGTGTAACC 1731 Query 1621 AAAGAAATTTTGT 1633 ||||||||||||| Sbjct 1732 AAAGAAATTTTGT 1744 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 83734509060 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5