BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477995 Length=889 Score E Sequences producing significant alignments: (Bits) Value AT3G06778.1 | Symbols: | Chaperone DnaJ-domain superfamily pro... 1282 0.0 > AT3G06778.1 | Symbols: | Chaperone DnaJ-domain superfamily protein | chr3:2140103-2141533 REVERSE LENGTH=932 Length=932 Score = 1282 bits (694), Expect = 0.0 Identities = 832/895 (93%), Gaps = 24/895 (3%) Strand=Plus/Plus Query 2 TCTCTCTCTTTCTGTTCTACTCACTCCTTCCATATAtttttttttttGCCTTCACCTCCA 61 ||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||| Sbjct 18 TCTCTCTCTTTCTGTTCTACTCACTCCTTCC--ATA--TTTTGTTTTGCCTTCACCTCCA 73 Query 62 TTTTTCTGGAAACTTTGGTTGCGATGGGTAAGATCCGACCCGGACCGGATCCAAAAGCGG 121 || | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 74 TTGTCCTGGAAACTTTTGTTGCGATGGGTAAGATCCGACCCGGACCGGATCCAAAAGCGG 133 Query 122 CATTGGTCTCAGATATTTTATCCCTATCGAGATCACCAATCTCTTGCATTCACATCAATT 181 |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 134 CATTGGTCTCAGATATTTTAGCGCTATCGAGATCACCAATCTCTTGCATTCACATCAATC 193 Query 182 GCATCTCATCCGGTTCATGTTTCATCGACTGGTATCTCATTCTCGGTATCCAGGAAGATG 241 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 194 GCATCTCATCCGGTTCATGTTTCATCGACTGGTATCTCATTCTCGGTATTCAGGAAGATG 253 Query 242 CAGAGGTCAAGGTCATACGTAAAAGATATCACAAATTAGCTTTGAAAGTTCATCCGGATA 301 ||||||| ||||||||||||||| |||||||||||||||||||||| |||||||| |||| Sbjct 254 CAGAGGTGAAGGTCATACGTAAACGATATCACAAATTAGCTTTGAAGGTTCATCCCGATA 313 Query 302 AAAACAATCACCCAAAGGCAGATATTGCTTTTAAGCTCATCCACGAGGCTTATTTATGTC 361 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 314 AAAACAATCACCCAAAAGCAGATATTGCTTTTAAGCTCATCCACGAGGCTTATTTATGTC 373 Query 362 TTTCAGACGAAACAAGGAGAATAAGCTTCAACACAGATCGACGAAAGAACATTTGTCTAA 421 |||| |||||||||| ||||| ||||||||||| ||| |||||||| ||||||||||||| Sbjct 374 TTTCCGACGAAACAAAGAGAAGAAGCTTCAACATAGACCGACGAAATAACATTTGTCTAA 433 Query 422 AATGCAGCCGAGTCTCACACAAAACCAAAGAGAACCGTAACGATTCTAAACCAAACCGGT 481 ||||||||||||||||||||||| ||||||| |||||||| ||||||||||| ||||||| Sbjct 434 AATGCAGCCGAGTCTCACACAAATCCAAAGAAAACCGTAATGATTCTAAACCGAACCGGT 493 Query 482 TCTGCCAAACCCTCAAGGACATTAGGGACAAGTTCAGAGAAGAGAACAAGGTGATAGAGA 541 |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 494 TCTGTCAAACCCTCAAGGACATTAGGGACAAGTTCAGAGAAGAGAACATGGTGATAGAGA 553 Query 542 GGTGTCTAAAAACCAATAGTGCAATCTTCATGGGGAACCGAACCAAGGAAACCCCG--G- 598 | ||||||||||||||||||||| |||||||||||||||||||||| ||||||||| | Sbjct 554 GATGTCTAAAAACCAATAGTGCATTCTTCATGGGGAACCGAACCAATGAAACCCCGCCGG 613 Query 599 TTTATGGTATACCAAACCAAAACCG-ATTAAAGAAGGAGTCGCCTGTTTTTAATCCATCG 657 |||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||| Sbjct 614 TTTATGGTATACCAAAGCAAAACCGGATTAAT-AAGGAGTCGCCTGTTTTTAATCCATCG 672 Query 658 GATTACAGGTTATGGGGTTATCCACATGTGAGAAATCGGGTGTTCGACTACAACTTGTCG 717 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 673 GATTATAGGTTATGGGGTTATCCACATGTGAGAAATCGGGTGTTCGACTACAACTTGTCG 732 Query 718 TCGGATTGGAATATGTTCACGAGAAGCAGATCCACTTGTGTTCACTCATCGTGATGattt 777 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 733 TCCGATTGGAATATGTTCACGAGAAGCAGATCCACTTGTGTTCACTCATCGTGATGATTT 792 Query 778 atctttcggtttttaaatatttac-ttttta-tttattttttccatt-tagtttaaataa 834 | |||||||||||||| | | || |||||| |||| |||||| || |||||||||||| Sbjct 793 AGCTTTCGGTTTTTAA-T-T--ACCTTTTTAATTTACTTTTTC-ATCCTAGTTTAAATAA 847 Query 835 gtgagaaaatatctattgattttttttttttttAGCTTCATTGTATTCTATCATT 889 ||||||||| ||| ||||| |||| | |||||||||||||||||||||| Sbjct 848 GTGAGAAAACATCAATTGAATTTTGT-------AGCTTCATTGTATTCTATCATT 895 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43402303008 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5