BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477995
Length=889
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06778.1 | Symbols: | Chaperone DnaJ-domain superfamily pro... 1282 0.0
> AT3G06778.1 | Symbols: | Chaperone DnaJ-domain superfamily protein
| chr3:2140103-2141533 REVERSE LENGTH=932
Length=932
Score = 1282 bits (694), Expect = 0.0
Identities = 832/895 (93%), Gaps = 24/895 (3%)
Strand=Plus/Plus
Query 2 TCTCTCTCTTTCTGTTCTACTCACTCCTTCCATATAtttttttttttGCCTTCACCTCCA 61
||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||
Sbjct 18 TCTCTCTCTTTCTGTTCTACTCACTCCTTCC--ATA--TTTTGTTTTGCCTTCACCTCCA 73
Query 62 TTTTTCTGGAAACTTTGGTTGCGATGGGTAAGATCCGACCCGGACCGGATCCAAAAGCGG 121
|| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 74 TTGTCCTGGAAACTTTTGTTGCGATGGGTAAGATCCGACCCGGACCGGATCCAAAAGCGG 133
Query 122 CATTGGTCTCAGATATTTTATCCCTATCGAGATCACCAATCTCTTGCATTCACATCAATT 181
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 134 CATTGGTCTCAGATATTTTAGCGCTATCGAGATCACCAATCTCTTGCATTCACATCAATC 193
Query 182 GCATCTCATCCGGTTCATGTTTCATCGACTGGTATCTCATTCTCGGTATCCAGGAAGATG 241
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 194 GCATCTCATCCGGTTCATGTTTCATCGACTGGTATCTCATTCTCGGTATTCAGGAAGATG 253
Query 242 CAGAGGTCAAGGTCATACGTAAAAGATATCACAAATTAGCTTTGAAAGTTCATCCGGATA 301
||||||| ||||||||||||||| |||||||||||||||||||||| |||||||| ||||
Sbjct 254 CAGAGGTGAAGGTCATACGTAAACGATATCACAAATTAGCTTTGAAGGTTCATCCCGATA 313
Query 302 AAAACAATCACCCAAAGGCAGATATTGCTTTTAAGCTCATCCACGAGGCTTATTTATGTC 361
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 314 AAAACAATCACCCAAAAGCAGATATTGCTTTTAAGCTCATCCACGAGGCTTATTTATGTC 373
Query 362 TTTCAGACGAAACAAGGAGAATAAGCTTCAACACAGATCGACGAAAGAACATTTGTCTAA 421
|||| |||||||||| ||||| ||||||||||| ||| |||||||| |||||||||||||
Sbjct 374 TTTCCGACGAAACAAAGAGAAGAAGCTTCAACATAGACCGACGAAATAACATTTGTCTAA 433
Query 422 AATGCAGCCGAGTCTCACACAAAACCAAAGAGAACCGTAACGATTCTAAACCAAACCGGT 481
||||||||||||||||||||||| ||||||| |||||||| ||||||||||| |||||||
Sbjct 434 AATGCAGCCGAGTCTCACACAAATCCAAAGAAAACCGTAATGATTCTAAACCGAACCGGT 493
Query 482 TCTGCCAAACCCTCAAGGACATTAGGGACAAGTTCAGAGAAGAGAACAAGGTGATAGAGA 541
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 494 TCTGTCAAACCCTCAAGGACATTAGGGACAAGTTCAGAGAAGAGAACATGGTGATAGAGA 553
Query 542 GGTGTCTAAAAACCAATAGTGCAATCTTCATGGGGAACCGAACCAAGGAAACCCCG--G- 598
| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
Sbjct 554 GATGTCTAAAAACCAATAGTGCATTCTTCATGGGGAACCGAACCAATGAAACCCCGCCGG 613
Query 599 TTTATGGTATACCAAACCAAAACCG-ATTAAAGAAGGAGTCGCCTGTTTTTAATCCATCG 657
|||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct 614 TTTATGGTATACCAAAGCAAAACCGGATTAAT-AAGGAGTCGCCTGTTTTTAATCCATCG 672
Query 658 GATTACAGGTTATGGGGTTATCCACATGTGAGAAATCGGGTGTTCGACTACAACTTGTCG 717
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 GATTATAGGTTATGGGGTTATCCACATGTGAGAAATCGGGTGTTCGACTACAACTTGTCG 732
Query 718 TCGGATTGGAATATGTTCACGAGAAGCAGATCCACTTGTGTTCACTCATCGTGATGattt 777
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 TCCGATTGGAATATGTTCACGAGAAGCAGATCCACTTGTGTTCACTCATCGTGATGATTT 792
Query 778 atctttcggtttttaaatatttac-ttttta-tttattttttccatt-tagtttaaataa 834
| |||||||||||||| | | || |||||| |||| |||||| || ||||||||||||
Sbjct 793 AGCTTTCGGTTTTTAA-T-T--ACCTTTTTAATTTACTTTTTC-ATCCTAGTTTAAATAA 847
Query 835 gtgagaaaatatctattgattttttttttttttAGCTTCATTGTATTCTATCATT 889
||||||||| ||| ||||| |||| | ||||||||||||||||||||||
Sbjct 848 GTGAGAAAACATCAATTGAATTTTGT-------AGCTTCATTGTATTCTATCATT 895
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43402303008
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5