BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477997
Length=892
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06790.1 | Symbols: | plastid developmental protein DAG, pu... 1155 0.0
> AT3G06790.1 | Symbols: | plastid developmental protein DAG,
putative | chr3:2144384-2145776 REVERSE LENGTH=948
Length=948
Score = 1155 bits (625), Expect = 0.0
Identities = 735/786 (94%), Gaps = 16/786 (2%)
Strand=Plus/Plus
Query 1 GAAGAAGAACAGAAGCCGAAACCCTCACCGGCGATGGCTCTTATCAACGCACGGCGAACA 60
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1 GAAGAAGAACAGAAGCCGAAACCCTCACCGGCGATGGCTCTTATCAGCACACGGCGAACA 60
Query 61 GTAGCGACACTTCTAAGCAAAAGCctctcttcctcttcttcatcttcttcttcattttct 120
|| ||||||| |||| ||||| ||||||||||||| |||||| ||||||||||||| ||
Sbjct 61 TTATCGACACTCCTAAACAAAACCCTCTCTTCCTCTACTTCATATTCTTCTTCATTTCCT 120
Query 121 acgctctcttctcgttctcGATTCGCCGTGCCTCTAATTGAAAAGG-----T-TT-CCG- 172
||||||||||||||||||||||||||| |||||||||||||||||| | || |||
Sbjct 121 ACGCTCTCTTCTCGTTCTCGATTCGCCATGCCTCTAATTGAAAAGGTTTCCTCTTCCCGA 180
Query 173 ----GACTGGGCCCGTGTTACATCTCGACCCGACCCAAGACATCCGGGTCCGGATACTCG 228
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACCAGCCTGGGCCCGTGTTACATCTCGACCCGACCCAAGACATCCGGGTCCGGATACTCG 240
Query 229 CCGCTGAATGATCCTTCGCCGAATTGGAGCAACCGTCCGCCGAAGGAGACGATTCTTCTT 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CCGCTGAATGATCCTTCGCCGAATTGGAGCAACCGTCCGCCGAAGGAGACGATTCTTCTT 300
Query 289 GATGGGTGCGATTATGAGCACTGGCTCATCGTCATGGAGTTCACTGATCCTAAACCCACT 348
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 GATGGGTGCGATTATGAGCACTGGCTCATCGTCATGGAGTTCACTGATCCTAAACCTACT 360
Query 349 GAAGAAGAGATGATCAATTCTTATGTCAAAACCTTAACTTCTGTCCTTGGCAGTG-AGGA 407
||||||||||||||||||||||||||||||||||||||||| ||||||||| | | | ||
Sbjct 361 GAAGAAGAGATGATCAATTCTTATGTCAAAACCTTAACTTCCGTCCTTGGCTG-GCAAGA 419
Query 408 AGAGGCCAAGAAGAAGATTTACTCGGTTAGTACTTCGACCTACACTGGCTTTGGTGCATT 467
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||
Sbjct 420 AGAGGCCAAGAAGAAGATTTACTCTGTTTGTACTTCGACCTACACTGGCTTTGGTGCTTT 479
Query 468 GATCTCTGAAGAGCTTTCTTGCAAAGTCAAAGCATTGCCTGGTGTTCTCTGGGTGCTGCC 527
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GATCTCTGAAGAGCTCTCTTGCAAAGTCAAAGCATTGCCTGGTGTTCTCTGGGTGCTGCC 539
Query 528 GGATTCCTATCTCGATGTACCAAACAAAGACTATGGAGGTGACTTGTACATTGAAGGAGA 587
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
Sbjct 540 GGATTCCTATCTCGATGTACCAAACAAAGACTACGGAGGTGACTTGTACGTTGAAGGAAA 599
Query 588 GGTCATACCCAGACCACAGTACAGGTTCACGGAACAGCGTCAGACTAGGAACC-GTTCTA 646
|||||||||||||||||||||||||||||||||||||||||| ||||| | || || |||
Sbjct 600 GGTCATACCCAGACCACAGTACAGGTTCACGGAACAGCGTCATACTAG-ACCCCGTCCTA 658
Query 647 GGCCAAGGTATGATAGGCGACGTTAGACAATGCAGGTCGAGAGGAGAGAGCCATCCATGG 706
||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||
Sbjct 659 GGCCAAGGTATGATAGGCGCCGTGAGACAATGCAGGTTGAGAGGAGAGAGCCATCCATGG 718
Query 707 GTCATCAAGCTCCAGCATATCCGGGAGAGTTCAACAAGCCCAGTGCTTAATATAAAACAT 766
||| ||| |||||| | ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 719 GTCTTCATTCTCCAGTAAATCCGGGAGAGTTCAACAAGCCCAGTGCTTAATATTAAACAT 778
Query 767 GAACAA 772
||||||
Sbjct 779 GAACAA 784
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43553005449
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5