BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478001
Length=1605
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06820.2 | Symbols: BRCC36B, AtBRCC36B | Mov34/MPN/PAD-1 fam... 1081 0.0
AT1G80210.1 | Symbols: BRCC36A, AtBRCC36A | Mov34/MPN/PAD-1 fam... 983 0.0
> AT3G06820.2 | Symbols: BRCC36B, AtBRCC36B | Mov34/MPN/PAD-1 family
protein | chr3:2150847-2153440 REVERSE LENGTH=1574
Length=1574
Score = 1081 bits (585), Expect = 0.0
Identities = 716/777 (92%), Gaps = 18/777 (2%)
Strand=Plus/Plus
Query 834 GGGTGGAGGACGGGTTTCAGATTTTGGGGCTTTCTTTGTTAACAATGCTGAGGCCAACAT 893
|||||||||||||||||||||||||||| |||||||| |||||| ||||||||| ||
Sbjct 797 GGGTGGAGGACGGGTTTCAGATTTTGGGCCTTTCTTTACAAACAATATTGAGGCCAATAT 856
Query 894 CACCGGCAGAGATGGAACTAGTGGAAATTACAGCTCAGGCAATCTCAGCAGCACAGCTAT 953
||||||||||||| ||| | | | | | | ||||||||||||||||||||| ||||
Sbjct 857 CACCGGCAGAGAT-GAA--ACT-CACA--A-A--TCAGGCAATCTCAGCAGCACAACTAT 907
Query 954 AGAAATTGACTCCATGGACATGTCTGAAAGTATGCAAGAGGCAATGCTCCGTTCAAATTT 1013
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 908 AGGAATTGACTCGATGGACATGTCTGAAAGTATGCAAGAGGCAATGCTCCGTTCAAATTT 967
Query 1014 AGAAACCAGTGGTGTGGGGTATGTTAGAAAAGAAGTCCCACTTCATGTTTTGCCAACTTC 1073
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 968 AGATACCAGTGGTGCGGGGTATGTTAGAAAAGAAGTCCCACTTCATGTTTTGCCAACTTC 1027
Query 1074 ATCCCTTCTTCAACTCAATTCACCTTTAGCATCTTTTAAAAGCCTGCAACGAGTACTCTA 1133
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1028 ATCCCTTCTTCCAGTCAATTCACCTTTAGCATCTTTTAAAAGCCTGCAACGAGTACTGTA 1087
Query 1134 CGAGGAGGAACGAGCAGCGTACCACCAATCGGTGCAGCAAATCATGAGAGACGGGCGAGT 1193
|||||||||||||||||||||| ||||||| |||||||||| ||||||||| ||||||||
Sbjct 1088 CGAGGAGGAACGAGCAGCGTACTACCAATCAGTGCAGCAAAACATGAGAGATGGGCGAGT 1147
Query 1194 TCATCCTCTTGCTTTCATTCACAACACATCAACATATCAAGCTTCCATGTGCAAGTTAAT 1253
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1148 TCATCCTCTTGCTTTCATTCACAACACATCAACATATCAAGCCTCCATGTGCAAGTTGAT 1207
Query 1254 CGAATACTGCTTGAGTCCTGCCATTAACGCACTTCAAGATAGGCTGAAGGAGAACAAGAT 1313
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1208 CGAATACTGCTTGAGTCCTGCCATTAACGCACTTCAAGATAGGCAGAAGGAGAACAAGAT 1267
Query 1314 CCGGTTAGCAATGCTGATGGATGAAGCTGAGGTTTTGGAAGCACAGAAACTTAAAGGAGC 1373
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1268 CCGGTTAGCAATGCTGATGGATGAAGCTGAGGTTTTGGAGGCACAAAAACTTAAAGGAGC 1327
Query 1374 AGAGACAAGCGGGGGGCCATCTCGTCTGGTTCACGGTTCTGGCAGCCGAAGCAGAAGAGG 1433
|||||||||| || | ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1328 AGAGACAAGCCGGAGACCATCTCATCTGGTTCACGGTTCTGGCAGCCGAAGCAGAAGAGG 1387
Query 1434 ACCGTAGAAAGATCTGCGACTAAAAGTCACA--C--GTCCTCTTTGTGTATGTTTCTATT 1489
| |||||||||| |||| |||||| | |||| | ||| ||||||||||| ||||||||
Sbjct 1388 ATCGTAGAAAGACCTGCAACTAAA-GACACATGCCCGTCTTCTTTGTGTATATTTCTATT 1446
Query 1490 TGGACATTTGTTTTCTTACAATTGTATCATTTTGACCAAACTCCATCGCTTTGTTGTTGT 1549
|||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||
Sbjct 1447 TGGACATTTGTTTTCTTACA-TTGTATTATTTTGACCAGACTCCATCGCTTTGTTGTTGT 1505
Query 1550 TTAGATTCTGATCAAGTTTTGGAAGAACCAGAAGAAA-AAGAATGAGAAGAAAATTA 1605
||||| ||||||| | |||||||||||||| || ||| |||||||||||||| ||||
Sbjct 1506 TTAGAATCTGATCCACTTTTGGAAGAACCA-AA-AAAGAAGAATGAGAAGAACATTA 1560
Score = 568 bits (307), Expect = 8e-161
Identities = 321/328 (98%), Gaps = 0/328 (0%)
Strand=Plus/Plus
Query 384 AATGACGATATCAACGGGCAGAACTACACGGGTGATTGGATGGTACCACTCCCATCCCCA 443
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 419 AATGACGATATCAACGGGCAGAACTACACGGGTCATTGGATGGTACCACTCCCATCCTCA 478
Query 444 TATTACCGTTCTTCCTTCCCATGTCGATGTTCGGACACAAGCTATGTATCAGCTTTTAGA 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TATTACCGTTCTTCCTTCCCATGTCGATGTTCGGACACAAGCTATGTATCAGCTTTTAGA 538
Query 504 TTCTGGTTTTATTGGCCTCATATTTTCCTGTTTTAGTGAAGATGCTAACAAGGTTGGTAG 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TTCTGGTTTTATTGGCCTCATATTTTCCTGTTTTAGTGAAGATGCTAACAAGGTTGGTAG 598
Query 564 AATCCAAGTTATCGCTTTCCAGTCTTCTGATGGAAACCCGAATAGTATTCCTAAATCAAT 623
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 599 AATCCAAGTTATCGCTTTCCAGTCTTCTGATGGAAAGCCGAATAGTATTCCTAAATCAAT 658
Query 624 GAGCCTGGTTCTTGCTAATAAAGATTCTGTCATCGATTTAGAATCGTCATTTAGTTCTTC 683
||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||
Sbjct 659 GAGCCTGGTTCTTGCTAATAAAGATTCTGTCATCGATATAGAATCTTCATCTAGTTCTTC 718
Query 684 GGACTCGATATACCAGAGATCCTCTTCT 711
|||||||||||||||| |||||||||||
Sbjct 719 GGACTCGATATACCAGCGATCCTCTTCT 746
Score = 470 bits (254), Expect = 2e-131
Identities = 336/372 (90%), Gaps = 20/372 (5%)
Strand=Plus/Plus
Query 1 GCGCCATGGGAACTCTGCTAAATTACAAGTT-CAACACATTATTAATGTACGATTCGTTC 59
||||||| |||||| |||||||||||| ||| | |||||| ||||||||| ||||| |||
Sbjct 14 GCGCCATCGGAACTGTGCTAAATTACACGTTCCGACACATAATTAATGTAGGATTCTTTC 73
Query 60 TACTGCTTTCCCCAGTTTCGTCCGTTAAACTAAAGAGGCAAAA-TCAAATCGAATTCTCG 118
| ||||||||| |||||||||||| |||||||||||| ||||||||||||||||
Sbjct 74 TTCTGCTTTCCTCAGTTTCGTCCG-------AAAGAGGCAAAATTCAAATCGAATTCTCG 126
Query 119 AAGACGCAAATAACAACATCTGCATACAGAGTTT-AAAGATCTCTTCGGAAGAAGTAATA 177
|||| || | ||||||||| | ||||| |||||||||||||||||||||||||
Sbjct 127 AAGAAGC---T-----CATCTGCAT-TA-AGTTTGAAAGATCTCTTCGGAAGAAGTAATA 176
Query 178 ATGTCTCTGACATGCGTAAATATGTCCGAGGATGTGTGGTTGACTTGCCTCACTCACGCA 237
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 177 ATGTCTCTGACATGCGTAAATATGTCGGAGGATGTCTGGTTGACTTGCCTCACTCACGCA 236
Query 238 TTATCCACCGAGACCGAAGAGATCATGGGTCTCCTTCTCGGCGACATCGAGTACTCAAAG 297
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 237 TTATCCACCGAGACCGAAGAAATCATGGGTCTCCTTCTCGGCGACATCGAGTACTCAAAG 296
Query 298 AACGGCGAAAGTGCCACAGCTATGATCTGGGCAGCATCGCCTCAGTCACGATCTGATCGG 357
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 297 AACGGCGAAAGTGCCACAGCTATGATCTGGGGAGCATCGCCTCAGCCACGATCTGATCGG 356
Query 358 CAGAAGGATCGA 369
||||||||||||
Sbjct 357 CAGAAGGATCGA 368
> AT1G80210.1 | Symbols: BRCC36A, AtBRCC36A | Mov34/MPN/PAD-1 family
protein | chr1:30162835-30165755 REVERSE LENGTH=1870
Length=1870
Score = 983 bits (532), Expect = 0.0
Identities = 641/690 (93%), Gaps = 21/690 (3%)
Strand=Plus/Plus
Query 834 GGGTGGAGGACGGGTTTCAGATTTTGGGGCTTTCTTTGTTAACAATGCTGAGGCCAACAT 893
|||||||||||| ||||||||||||| |||||||||||| |||||| ||||||||||||
Sbjct 757 GGGTGGAGGACGCGTTTCAGATTTTGAGGCTTTCTTTGTGAACAATACTGAGGCCAACAA 816
Query 894 CACCGGCAGAGATGGAACTAGTGGAAATTACAGCTCAGGCAATCTCAGCAGCACAGCTAT 953
|||| | ||||||||||| ||||| | | | || | |||||||||||| ||
Sbjct 817 CACCAGAAGAGATGGAACAAGTGG--A--A-A-CT------A---CAGCAGCACAGCAAT 861
Query 954 AGAAATTGACTCCATGGACATGTCTGAAAGTATGCAAGAGGCAATGCTCCGTTCAAATTT 1013
|||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 862 AGAAATTGACTCGATGGACATGTCTGAAAGTATGCAAGAGGCAATGCACCGCTCAAATTT 921
Query 1014 AGAAACCAGTGGTGTGGGGTATGTTAGAAAAGAAGTCCCACTTCATGTTTTGCCAACTTC 1073
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 922 AGAAACCAGTGGTGTGGGGTATGTTAGAAAAGAAGTCCCACTTCATGTTTTGCCGACTTC 981
Query 1074 ATCCCTTCTTCAACTCAATTCACCTTTAGCATCTTTTAAAAGCCTGCAACGAGTACTCTA 1133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 982 ATCCCTTCTTCAACTCAATTCACCTTTAGCATCTTTTAAAAGCCTGCAACGAGTACTCTA 1041
Query 1134 CGAGGAGGAACGAGCAGCGTACCACCAATCGGTGCAGCAAATCATGAGAGACGGGCGAGT 1193
|||||||||||||||||||||||||||||| |||||||||| || |||||||||| ||||
Sbjct 1042 CGAGGAGGAACGAGCAGCGTACCACCAATCCGTGCAGCAAAGCAAGAGAGACGGGAGAGT 1101
Query 1194 TCATCCTCTTGCTTTCATTCACAACACATCAACATATCAAGCTTCCATGTGCAAGTTAAT 1253
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1102 TCATCCTCTTGCTTTCATTCACAACACATCAACATATCAGGCTTCCATGTGCAAGTTAAT 1161
Query 1254 CGAATACTGCTTGAGTCCTGCCATTAACGCACTTCAAGATAGGCTGAAGGAGAACAAGAT 1313
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1162 AGAATACTGCTTGAGTCCTGCCATTAACGCACTTCAAGATAGGCTGAAGGAGAACAAGAT 1221
Query 1314 CCGGTTAGCAATGCTGATGGATGAAGCTGAGGTTTTGGAAGCACAGAAACTTAAAGGAGC 1373
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1222 CCGGTTAGCAATGCTGATGGATGAAGCTGAAGTTTTGGAAGCACAGAAACTGAAAGGAGC 1281
Query 1374 AGAGACAAGCGGGGG-GCCATCTCGTCTGGTTCACGGTTCTGGCAGCCGAAGCAGAAGAG 1432
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1282 AGAGACAAGCGGGGGAGC-ATCTCGTCTGGTTCACGGTTCTGGCAGCCGAAGCAGAAGAC 1340
Query 1433 GACCGTAGAAAGATCTGCGACTAAAAGTCACACG--T-CCTCTTTGTGTATGTTTCTATT 1489
|| |||||||||||||| ||||||| | |||| | | ||||||||||||||||||||||
Sbjct 1341 GATCGTAGAAAGATCTGTGACTAAAGG-CACATGCCTTCCTCTTTGTGTATGTTTCTATT 1399
Query 1490 TGGACATTTGTTTTCTTACAATTGTATCAT 1519
|||| |||||||||||||||| ||||||||
Sbjct 1400 TGGATATTTGTTTTCTTACAACTGTATCAT 1429
Score = 597 bits (323), Expect = 1e-169
Identities = 347/359 (97%), Gaps = 0/359 (0%)
Strand=Plus/Plus
Query 384 AATGACGATATCAACGGGCAGAACTACACGGGTGATTGGATGGTACCACTCCCATCCCCA 443
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 370 AATGACGATATCAACGGGCAGAACTACACGGGTCATTGGATGGTACCACTCCCATCCTCA 429
Query 444 TATTACCGTTCTTCCTTCCCATGTCGATGTTCGGACACAAGCTATGTATCAGCTTTTAGA 503
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 430 TATTACCGTTCTTCCTTCCCATGTCGATGTTCGAACACAAGCTATGTATCAGCTTTTAGA 489
Query 504 TTCTGGTTTTATTGGCCTCATATTTTCCTGTTTTAGTGAAGATGCTAACAAGGTTGGTAG 563
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 490 TTCTGGTTTTATTGGCCTCATCTTTTCCTGTTTTAGTGAAGATGCTAACAAGGTTGGCAG 549
Query 564 AATCCAAGTTATCGCTTTCCAGTCTTCTGATGGAAACCCGAATAGTATTCCTAAATCAAT 623
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 550 AATCCAAGTTATCGCTTTCCAGTCTTCTGATGGAAAGCCGAATAGTATTCCTAAATCAAT 609
Query 624 GAGCCTGGTTCTTGCTAATAAAGATTCTGTCATCGATTTAGAATCGTCATTTAGTTCTTC 683
||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 610 GAGCCTGGTTCTTGCAAATAAAGATTCTGTTATCGATTTAGAATCTTCATTTAGTTCTTC 669
Query 684 GGACTCGATATACCAGAGATCCTCTTCTGCTCGGGGAGACAATCCCGAGCTAGACACAA 742
||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||
Sbjct 670 GGACTCGATATACCAGAGATCGTCTTCTGCTCGGGGAGACAATCCTGAGCTCGACACAA 728
Score = 401 bits (217), Expect = 9e-111
Identities = 291/324 (90%), Gaps = 15/324 (5%)
Strand=Plus/Plus
Query 50 CGATTCG-TTCTACTGCTTTCCCCAGTTTCGTCCGTTAAA-CT--AAAGAGGCAAAATCA 105
||||| | |||| || | ||| ||||||||||| | |||| || |||||||||||||||
Sbjct 1 CGATT-GTTTCTTCTTCGTTCTCCAGTTTCGTCGGATAAATCTAAAAAGAGGCAAAATCA 59
Query 106 AATCGAATTCTCGAAGACGCAAATAACAACATCTGCATACAGAGTTTAAAG---ATCTCT 162
||||||||||||||||| |||||| ||| |||||||| || |||||||| ||||||
Sbjct 60 AATCGAATTCTCGAAGAAGCAAAT---AACGTCTGCATAAAG-GTTTAAAGTTTATCTCT 115
Query 163 TCGGAAGAAGTAATAATGTCTCTGACATGCGTAAATATGTCCGAGGATGTGTGGTTGACT 222
|| |||||||| | |||||||| |||||||| ||||||||||||||||| |||||||||
Sbjct 116 TCCGAAGAAGT--T-ATGTCTCTTACATGCGTTAATATGTCCGAGGATGTCTGGTTGACT 172
Query 223 TGCCTCACTCACGCATTATCCACCGAGACCGAAGAGATCATGGGTCTCCTTCTCGGCGAC 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 173 TGCCTCACTCACGCATTATCCACCGAGACCGAAGAGATCATGGGTCTCCTTCTCGGCGAC 232
Query 283 ATCGAGTACTCAAAGAACGGCGAAAGTGCCACAGCTATGATCTGGGCAGCATCGCCTCAG 342
||||||||||||||| |||| | ||||||||||||||||||||||| |||||||||||||
Sbjct 233 ATCGAGTACTCAAAGGACGGGGGAAGTGCCACAGCTATGATCTGGGGAGCATCGCCTCAG 292
Query 343 TCACGATCTGATCGGCAGAAGGAT 366
||||| ||||||||||||||||||
Sbjct 293 TCACGGTCTGATCGGCAGAAGGAT 316
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79266660555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5