BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478002
Length=2060
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06830.1 | Symbols: | Plant invertase/pectin methylesterase... 3125 0.0
> AT3G06830.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily | chr3:2153864-2156148 FORWARD LENGTH=2122
Length=2122
Score = 3125 bits (1692), Expect = 0.0
Identities = 1955/2077 (94%), Gaps = 37/2077 (2%)
Strand=Plus/Plus
Query 1 GACAGAAAATGTAACATAGCCTCATGTTATTTCCTAAAACCCCAGAAATAGAATTACAAC 60
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1 GACAGAAAATGTAACATAGCCTCATGTTCTTTCCTAAAACCCCAGAAATAGTATTACAAC 60
Query 61 TCCTCTCTATATTAACCCCGTCGATCTTTCTATCCATTTGTTCTAAGCATTGTATATACC 120
|| | |||||||||||||| |||||||||| || ||||||||||||||||||| ||||||
Sbjct 61 TCTTTTCTATATTAACCCCATCGATCTTTCGATTCATTTGTTCTAAGCATTGTGTATACC 120
Query 121 AAACGCGAAAACATCCCCTCCCCCTaaaaaaacaa-aaaaaaa-TCAGAGCTAGAAGGGG 178
|||| |||||| ||||| |||||||||||||| || ||||||| ||||||||||||||||
Sbjct 121 AAACACGAAAAGATCCCTTCCCCCTAAAAAAAAAATAAAAAAATTCAGAGCTAGAAGGGG 180
Query 179 CCTTTTAGTTTTAGCCTCAGTTACAGGCCCCATCTGCT-C--------CATGTGTAGAAA 229
||| ||||| ||||| |||||| |||||||||||||| | ||||||||||||
Sbjct 181 CCTCATAGTTATAGCCACAGTTATAGGCCCCATCTGCTCCATTTTTAACATGTGTAGAAA 240
Query 230 ATCATATTAGAAAAGTAGGAAAAAATTACTTGAAAACTACAGCAAAGATACCTTTTTCGA 289
||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 241 ATCATATTAGAAAAGTAGGAAAAAA-TACTTG--------AGCAAAGATACCTTTTTCGA 291
Query 290 CCTTTAGAATTTTTGTG-A-ATATAGGAAACAGaaaaaaaTGGGTTCT-ATTGGTGACAA 346
||||||||||||||||| | ||||||||||||| |||||||||||||| | |||||||||
Sbjct 292 CCTTTAGAATTTTTGTGAATATATAGGAAACAG-AAAAAATGGGTTCTGA-TGGTGACAA 349
Query 347 GAAAAAGAAATTCATCATCGCCGGTAGTGTCTCGGGTTTCCTAGTCATCATGGTTGTCTC 406
||| |||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 350 GAAGAAGAAATTCATCGTCGCCGGTAGTGTCTCCGGTTTTCTAGTCATCATGGTTGTCTC 409
Query 407 TGTAGCCGTTGTAACCTCTAAACACTCTCCCAAAGCCGATGAAAATCATATCAAG-AAAA 465
||||||||||||||| ||||||||||||||||||| |||||||||||||||| || ||||
Sbjct 410 TGTAGCCGTTGTAACGTCTAAACACTCTCCCAAAGACGATGAAAATCATATC-AGAAAAA 468
Query 466 CCACCAAAGCGGTTCAAGCAGTTTGTGCACCCACTGACTTTAAAGACACTTGTGTTAACA 525
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 469 CCACCAAAGCGGTTCAAGCAGTTTGTGCACCCACTGACTTCAAAGACACTTGTGTTAACA 528
Query 526 GCTTAATGGGTGCTTCTCCCAATTCCGCTGAGCCTCTCGACCTCATCAAACTAGGCTTCA 585
|||||||||||||||||||| |||||| ||| ||| |||||||||||||||| |||||||
Sbjct 529 GCTTAATGGGTGCTTCTCCCGATTCCGATGACCCTGTCGACCTCATCAAACTCGGCTTCA 588
Query 586 ACATCACTATCAAATCCATCAACGAAAGCCTCAAAAAGGCCTCTGGAGATGTCAAAGCCA 645
| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 589 AGGTCACTATCAAATCCATCAACGAAAGCCTGGAAAAGGCCTCTGGAGATATCAAAGCCA 648
Query 646 AGGCTGACAAAAACCCAGAAGCGAAGGGTGCTTTCGAGCTGTGTGAGAAGCTGATGATTG 705
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 649 AGGCTGACAAGAACCCAGAAGCAAAGGGTGCTTTCGAGCTGTGTGAGAAGCTGATGATTG 708
Query 706 ATGCTATTGACGACTTGAAGAAGTGTATGGATCATGGATTCTCGGTTGATCAGATTGAGG 765
||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 709 ATGCTATCGATGACTTGAAGAAGTGTATGGATCATGGATTCTCGGTTGATCAGATCGAGG 768
Query 766 TCTTTGTTGAGGATCTACGGGTTTGGCTAAGTGGCTCCATCGCATTCCAGCAAACATGTA 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 TCTTTGTTGAGGATCTACGGGTTTGGCTAAGTGGCTCCATCGCATTCCAGCAAACATGTA 828
Query 826 TGGATTCCTTTGGGGAAATTAAGTCCAATCTTATGCAAGACATGCTCAAGATCTTCCAAA 885
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 829 TGGATTCCTTTGGGGAAATTAAGTCTAATCTTATGCAAGACATGCTCAAGATCTTCAAAA 888
Query 886 CATCAAGAGAGCTTAGTAGCAATAGCCTTGCCATGGTTACTAGCATCTCCACTCTTCTCC 945
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 889 CATCAAGAGAGCTTAGTAGCAATAGCCTTGCCATGGTTACTAGAATCTCCACTCTTATCC 948
Query 946 CAAACTCCAACATTACAGGACTAACCGGAGCTTTAGCAAACTACGCGAGAAAGCTTCTGT 1005
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 949 CAAACTCCAACCTTACAGGACTAACCGGAGCTTTAGCAAAGTACGCGAGAAAGCTTCTGT 1008
Query 1006 CTACAGAAGATGGTATCCCAAATTGGGTTGGACCAGAGGCACGACGACTCATGGCGGCAC 1065
||||||||||| ||||||||| |||||||||||||||||||||||| |||||||| || |
Sbjct 1009 CTACAGAAGATAGTATCCCAACTTGGGTTGGACCAGAGGCACGACGGCTCATGGCAGCTC 1068
Query 1066 AAGGAGGAGGACCAGGACCTGGACCTGTGAAGGCTAATGCCGTGGTAGCTCAAGACGGAA 1125
| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1069 -A--AGGAGG---AGGACCTGGACCTGTGAAGGCTAATGCCGTGGTGGCTCAAGACGGAA 1122
Query 1126 GTGGCCAGTTCAAGACTATCACCGATGCTCTAAATGGTGTGCCTAAAGGCAACACAGTTC 1185
||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
Sbjct 1123 CTGGACAGTTCAAGACTATCACCGATGCTCTAAATGCTGTGCCTAAAGGCAACAAAGTGC 1182
Query 1186 CATTCGTAATTCACATCAAACAAGGTATCTACAAGGAGAAAGTTATGGTCACCAGGAAAA 1245
||||| | |||||||||||| |||||||||||||||||||||||| |||||||| |||||
Sbjct 1183 CATTCATCATTCACATCAAAGAAGGTATCTACAAGGAGAAAGTTACGGTCACCAAGAAAA 1242
Query 1246 TGCCTTACGTCACTTTCATCGGCGATGGACCAAACAAGAC-CGTAATCACCGGTAGTCTC 1304
||||| |||| ||||||||||||||||| ||||||||||| | |||||||||||||||||
Sbjct 1243 TGCCTCACGTAACTTTCATCGGCGATGGGCCAAACAAGACTC-TAATCACCGGTAGTCTC 1301
Query 1305 AATTTCGGTATCGGCAAGGTCAAGACCTTCCTAACAGCCACCATCACAGTCGAAGGCGAC 1364
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 1302 AATTTCGGTATCGGCAAGGTCAAGACCTTCCTAACAGCCACAATCACAATCGAAGGCGAC 1361
Query 1365 CACTTCACAGCGAAGAACATCGGAATCGAGAACACAGCTGGACCAGAAGGAGGACAAGCG 1424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1362 CACTTCACAGCGAAGAACATCGGAATCGAGAACACAGCTGGACCAGAAGGAGGACAAGCG 1421
Query 1425 GTGGCATTAAGAGTCTCGGCGGATTACGCCGTATTCCACAGCTGTCAAATCGACGGGCAC 1484
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1422 GTGGCGTTAAGAGTCTCGGCTGATTACGCCGTATTCCACAGCTGTCAAATCGACGGGCAC 1481
Query 1485 CAAGACACATTATACGTTCACTCTCACCGGCAATTCTACCGTGACTGCACAGTCTCGGGC 1544
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1482 CAAGACACGTTATACGTTCACTCTCACCGGCAATTCTACCGTGACTGCACAGTCTCGGGC 1541
Query 1545 ACCGTCGATTTCATCTTCGGAGACGCGAAATGCATACTCCAGAACTGTAAAATCGTCGTC 1604
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1542 ACCGTCGATTTCATCTTCGGAGACGCGAAATGCATCCTCCAGAACTGTAAAATCGTCGTC 1601
Query 1605 CGAAAACCTAACAAAGGTCAATCGTGTATGGTTACAGCTCAGGGACGAAGCAACGTCCGT 1664
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1602 CGAAAACCTAACAAAGGTCAAACGTGTATGGTTACAGCTCAGGGACGAAGTAACGTCCGT 1661
Query 1665 GAATCGACCGGATTGGTGCTCCATGGCTGCCATATAACGGGAGATCCGGCGTATATTCCG 1724
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1662 GAATCGACAGGATTGGTGCTCCATGGCTGCCATATAACGGGAGATCCAGCGTATATTCCG 1721
Query 1725 GTGAAATCTGTGAACAAAGCTTACCTAGGAAGGCCGTGGAAGGAGTTCTCGAGGACGATC 1784
||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||| |||
Sbjct 1722 ATGAAATCTGTGAATAAAGCTTACTTAGGAAGACCGTGGAAGGAGTTCTCGAGGACAATC 1781
Query 1785 ATCATGAAGACGACGATCGATGACGTCATCGATCCGGCGGGATGGCTTCCTTGGAGTGGA 1844
|| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1782 ATTATGAAAACGACGATCGATGACGTCATCGATCCGGCGGGATGGCTTCCCTGGAGTGGA 1841
Query 1845 GATTTTGCGCTCAAGACGCTATACTACGCCGAGCATATGAATACTGGGCCTGGATCGAAT 1904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1842 GATTTTGCGCTCAAGACGCTATACTACGCCGAGCATATGAATACTGGGCCTGGATCGAAT 1901
Query 1905 CAGGCCCAAAGAGTTAAATGGCCCGGAATTAAGAAACTAACGCCCCAAGATGCTCTTTTA 1964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1902 CAGGCCCAAAGAGTTAAATGGCCCGGAATTAAGAAACTAACGCCCCAAGATGCTCTTTTA 1961
Query 1965 TACACTGGCGACAGATTCTTACGTGGCGATACGTGGATCCCACAAACACAAGTACCGTAT 2024
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1962 TACACTGGCGACAGATTCTTACGTGGCGATACGTGGATCCCACAAACACAAGTTCCGTAT 2021
Query 2025 ACAGCAAACATT-TAGGAGATTCCAAATTTTGTAAAT 2060
||||| || | | ||||||||||||||||||||||||
Sbjct 2022 ACAGCTAA-AGTGTAGGAGATTCCAAATTTTGTAAAT 2057
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102107908530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5