BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg478002 Length=2060 Score E Sequences producing significant alignments: (Bits) Value AT3G06830.1 | Symbols: | Plant invertase/pectin methylesterase... 3125 0.0 > AT3G06830.1 | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr3:2153864-2156148 FORWARD LENGTH=2122 Length=2122 Score = 3125 bits (1692), Expect = 0.0 Identities = 1955/2077 (94%), Gaps = 37/2077 (2%) Strand=Plus/Plus Query 1 GACAGAAAATGTAACATAGCCTCATGTTATTTCCTAAAACCCCAGAAATAGAATTACAAC 60 |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| Sbjct 1 GACAGAAAATGTAACATAGCCTCATGTTCTTTCCTAAAACCCCAGAAATAGTATTACAAC 60 Query 61 TCCTCTCTATATTAACCCCGTCGATCTTTCTATCCATTTGTTCTAAGCATTGTATATACC 120 || | |||||||||||||| |||||||||| || ||||||||||||||||||| |||||| Sbjct 61 TCTTTTCTATATTAACCCCATCGATCTTTCGATTCATTTGTTCTAAGCATTGTGTATACC 120 Query 121 AAACGCGAAAACATCCCCTCCCCCTaaaaaaacaa-aaaaaaa-TCAGAGCTAGAAGGGG 178 |||| |||||| ||||| |||||||||||||| || ||||||| |||||||||||||||| Sbjct 121 AAACACGAAAAGATCCCTTCCCCCTAAAAAAAAAATAAAAAAATTCAGAGCTAGAAGGGG 180 Query 179 CCTTTTAGTTTTAGCCTCAGTTACAGGCCCCATCTGCT-C--------CATGTGTAGAAA 229 ||| ||||| ||||| |||||| |||||||||||||| | |||||||||||| Sbjct 181 CCTCATAGTTATAGCCACAGTTATAGGCCCCATCTGCTCCATTTTTAACATGTGTAGAAA 240 Query 230 ATCATATTAGAAAAGTAGGAAAAAATTACTTGAAAACTACAGCAAAGATACCTTTTTCGA 289 ||||||||||||||||||||||||| |||||| |||||||||||||||||||| Sbjct 241 ATCATATTAGAAAAGTAGGAAAAAA-TACTTG--------AGCAAAGATACCTTTTTCGA 291 Query 290 CCTTTAGAATTTTTGTG-A-ATATAGGAAACAGaaaaaaaTGGGTTCT-ATTGGTGACAA 346 ||||||||||||||||| | ||||||||||||| |||||||||||||| | ||||||||| Sbjct 292 CCTTTAGAATTTTTGTGAATATATAGGAAACAG-AAAAAATGGGTTCTGA-TGGTGACAA 349 Query 347 GAAAAAGAAATTCATCATCGCCGGTAGTGTCTCGGGTTTCCTAGTCATCATGGTTGTCTC 406 ||| |||||||||||| |||||||||||||||| ||||| |||||||||||||||||||| Sbjct 350 GAAGAAGAAATTCATCGTCGCCGGTAGTGTCTCCGGTTTTCTAGTCATCATGGTTGTCTC 409 Query 407 TGTAGCCGTTGTAACCTCTAAACACTCTCCCAAAGCCGATGAAAATCATATCAAG-AAAA 465 ||||||||||||||| ||||||||||||||||||| |||||||||||||||| || |||| Sbjct 410 TGTAGCCGTTGTAACGTCTAAACACTCTCCCAAAGACGATGAAAATCATATC-AGAAAAA 468 Query 466 CCACCAAAGCGGTTCAAGCAGTTTGTGCACCCACTGACTTTAAAGACACTTGTGTTAACA 525 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 469 CCACCAAAGCGGTTCAAGCAGTTTGTGCACCCACTGACTTCAAAGACACTTGTGTTAACA 528 Query 526 GCTTAATGGGTGCTTCTCCCAATTCCGCTGAGCCTCTCGACCTCATCAAACTAGGCTTCA 585 |||||||||||||||||||| |||||| ||| ||| |||||||||||||||| ||||||| Sbjct 529 GCTTAATGGGTGCTTCTCCCGATTCCGATGACCCTGTCGACCTCATCAAACTCGGCTTCA 588 Query 586 ACATCACTATCAAATCCATCAACGAAAGCCTCAAAAAGGCCTCTGGAGATGTCAAAGCCA 645 | |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 589 AGGTCACTATCAAATCCATCAACGAAAGCCTGGAAAAGGCCTCTGGAGATATCAAAGCCA 648 Query 646 AGGCTGACAAAAACCCAGAAGCGAAGGGTGCTTTCGAGCTGTGTGAGAAGCTGATGATTG 705 |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 649 AGGCTGACAAGAACCCAGAAGCAAAGGGTGCTTTCGAGCTGTGTGAGAAGCTGATGATTG 708 Query 706 ATGCTATTGACGACTTGAAGAAGTGTATGGATCATGGATTCTCGGTTGATCAGATTGAGG 765 ||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 709 ATGCTATCGATGACTTGAAGAAGTGTATGGATCATGGATTCTCGGTTGATCAGATCGAGG 768 Query 766 TCTTTGTTGAGGATCTACGGGTTTGGCTAAGTGGCTCCATCGCATTCCAGCAAACATGTA 825 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 769 TCTTTGTTGAGGATCTACGGGTTTGGCTAAGTGGCTCCATCGCATTCCAGCAAACATGTA 828 Query 826 TGGATTCCTTTGGGGAAATTAAGTCCAATCTTATGCAAGACATGCTCAAGATCTTCCAAA 885 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| Sbjct 829 TGGATTCCTTTGGGGAAATTAAGTCTAATCTTATGCAAGACATGCTCAAGATCTTCAAAA 888 Query 886 CATCAAGAGAGCTTAGTAGCAATAGCCTTGCCATGGTTACTAGCATCTCCACTCTTCTCC 945 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| Sbjct 889 CATCAAGAGAGCTTAGTAGCAATAGCCTTGCCATGGTTACTAGAATCTCCACTCTTATCC 948 Query 946 CAAACTCCAACATTACAGGACTAACCGGAGCTTTAGCAAACTACGCGAGAAAGCTTCTGT 1005 ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 949 CAAACTCCAACCTTACAGGACTAACCGGAGCTTTAGCAAAGTACGCGAGAAAGCTTCTGT 1008 Query 1006 CTACAGAAGATGGTATCCCAAATTGGGTTGGACCAGAGGCACGACGACTCATGGCGGCAC 1065 ||||||||||| ||||||||| |||||||||||||||||||||||| |||||||| || | Sbjct 1009 CTACAGAAGATAGTATCCCAACTTGGGTTGGACCAGAGGCACGACGGCTCATGGCAGCTC 1068 Query 1066 AAGGAGGAGGACCAGGACCTGGACCTGTGAAGGCTAATGCCGTGGTAGCTCAAGACGGAA 1125 | |||||| ||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1069 -A--AGGAGG---AGGACCTGGACCTGTGAAGGCTAATGCCGTGGTGGCTCAAGACGGAA 1122 Query 1126 GTGGCCAGTTCAAGACTATCACCGATGCTCTAAATGGTGTGCCTAAAGGCAACACAGTTC 1185 ||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||| | Sbjct 1123 CTGGACAGTTCAAGACTATCACCGATGCTCTAAATGCTGTGCCTAAAGGCAACAAAGTGC 1182 Query 1186 CATTCGTAATTCACATCAAACAAGGTATCTACAAGGAGAAAGTTATGGTCACCAGGAAAA 1245 ||||| | |||||||||||| |||||||||||||||||||||||| |||||||| ||||| Sbjct 1183 CATTCATCATTCACATCAAAGAAGGTATCTACAAGGAGAAAGTTACGGTCACCAAGAAAA 1242 Query 1246 TGCCTTACGTCACTTTCATCGGCGATGGACCAAACAAGAC-CGTAATCACCGGTAGTCTC 1304 ||||| |||| ||||||||||||||||| ||||||||||| | ||||||||||||||||| Sbjct 1243 TGCCTCACGTAACTTTCATCGGCGATGGGCCAAACAAGACTC-TAATCACCGGTAGTCTC 1301 Query 1305 AATTTCGGTATCGGCAAGGTCAAGACCTTCCTAACAGCCACCATCACAGTCGAAGGCGAC 1364 ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| Sbjct 1302 AATTTCGGTATCGGCAAGGTCAAGACCTTCCTAACAGCCACAATCACAATCGAAGGCGAC 1361 Query 1365 CACTTCACAGCGAAGAACATCGGAATCGAGAACACAGCTGGACCAGAAGGAGGACAAGCG 1424 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1362 CACTTCACAGCGAAGAACATCGGAATCGAGAACACAGCTGGACCAGAAGGAGGACAAGCG 1421 Query 1425 GTGGCATTAAGAGTCTCGGCGGATTACGCCGTATTCCACAGCTGTCAAATCGACGGGCAC 1484 ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1422 GTGGCGTTAAGAGTCTCGGCTGATTACGCCGTATTCCACAGCTGTCAAATCGACGGGCAC 1481 Query 1485 CAAGACACATTATACGTTCACTCTCACCGGCAATTCTACCGTGACTGCACAGTCTCGGGC 1544 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1482 CAAGACACGTTATACGTTCACTCTCACCGGCAATTCTACCGTGACTGCACAGTCTCGGGC 1541 Query 1545 ACCGTCGATTTCATCTTCGGAGACGCGAAATGCATACTCCAGAACTGTAAAATCGTCGTC 1604 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1542 ACCGTCGATTTCATCTTCGGAGACGCGAAATGCATCCTCCAGAACTGTAAAATCGTCGTC 1601 Query 1605 CGAAAACCTAACAAAGGTCAATCGTGTATGGTTACAGCTCAGGGACGAAGCAACGTCCGT 1664 ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| Sbjct 1602 CGAAAACCTAACAAAGGTCAAACGTGTATGGTTACAGCTCAGGGACGAAGTAACGTCCGT 1661 Query 1665 GAATCGACCGGATTGGTGCTCCATGGCTGCCATATAACGGGAGATCCGGCGTATATTCCG 1724 |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1662 GAATCGACAGGATTGGTGCTCCATGGCTGCCATATAACGGGAGATCCAGCGTATATTCCG 1721 Query 1725 GTGAAATCTGTGAACAAAGCTTACCTAGGAAGGCCGTGGAAGGAGTTCTCGAGGACGATC 1784 ||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||| ||| Sbjct 1722 ATGAAATCTGTGAATAAAGCTTACTTAGGAAGACCGTGGAAGGAGTTCTCGAGGACAATC 1781 Query 1785 ATCATGAAGACGACGATCGATGACGTCATCGATCCGGCGGGATGGCTTCCTTGGAGTGGA 1844 || ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1782 ATTATGAAAACGACGATCGATGACGTCATCGATCCGGCGGGATGGCTTCCCTGGAGTGGA 1841 Query 1845 GATTTTGCGCTCAAGACGCTATACTACGCCGAGCATATGAATACTGGGCCTGGATCGAAT 1904 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1842 GATTTTGCGCTCAAGACGCTATACTACGCCGAGCATATGAATACTGGGCCTGGATCGAAT 1901 Query 1905 CAGGCCCAAAGAGTTAAATGGCCCGGAATTAAGAAACTAACGCCCCAAGATGCTCTTTTA 1964 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1902 CAGGCCCAAAGAGTTAAATGGCCCGGAATTAAGAAACTAACGCCCCAAGATGCTCTTTTA 1961 Query 1965 TACACTGGCGACAGATTCTTACGTGGCGATACGTGGATCCCACAAACACAAGTACCGTAT 2024 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1962 TACACTGGCGACAGATTCTTACGTGGCGATACGTGGATCCCACAAACACAAGTTCCGTAT 2021 Query 2025 ACAGCAAACATT-TAGGAGATTCCAAATTTTGTAAAT 2060 ||||| || | | |||||||||||||||||||||||| Sbjct 2022 ACAGCTAA-AGTGTAGGAGATTCCAAATTTTGTAAAT 2057 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 102107908530 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5