BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg478003 Length=772 Score E Sequences producing significant alignments: (Bits) Value AT3G06840.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1088 0.0 > AT3G06840.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G49170.1); Has 33 Blast hits to 33 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:2156862-2157850 FORWARD LENGTH=858 Length=858 Score = 1088 bits (589), Expect = 0.0 Identities = 701/753 (93%), Gaps = 15/753 (2%) Strand=Plus/Plus Query 19 AAACGACCTCGGAAGAAAAATGTCCAACATTTCCCCAATCTTCACCATCTCCAACTCTCA 78 ||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||| Sbjct 50 AAACGACCTCGTAAGAAAAATGTCAAACATTTCCCCAATCTTCTCCATCTCCAACTCTCA 109 Query 79 ACATTTCAGCGACTATGGCTTCGATCCCCAGCTCCACTACTTTCAGGTTATGGAAGAAGC 138 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 110 ACATTTCAGCGACTATGGCTTCGATCCCCAACTCCACTACTTTCAGGTTATGGAAGAAGC 169 Query 139 GAGGAAGCATAAGAGAGAAACGTCATCAAAATCATACATGAACGGTCTTCAATTCAAGAT 198 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 170 GAGGAAGCATAAGAGAGAAACGTCATCAAAATCATACACGAACGGTCTTCAATTCAAGAT 229 Query 199 CCAGAAACCCATTTCAAAAGACAACCCGACCCGGTCCACAATGCACAACGACAAGAAGAA 258 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 230 CCAGAAACCCATTTCAAAAGACAACCCGACCCGGTCCACAATGCACAACGACAAGAAGAA 289 Query 259 GAAACGGTGTTGGTGGAAGAAAGCTTTGCCTTTCTTCAAATGGCGGAAATGGCCAATCTC 318 ||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||| Sbjct 290 GAAACGGTGTTGGTGGAAGAAAGCTCTCCCTTTTTTCAAATGGCGGAAATGGCCAATCTC 349 Query 319 CACCGTCGGCGTGAACGAAGATCGTAGGG-CTAGAAATTTTGGCGCCGTAACCGGGTCGA 377 ||||||||||||||||||||||||||||| | || || ||| || ||||||||||||| | Sbjct 350 CACCGTCGGCGTGAACGAAGATCGTAGGGTC-AGGAACTTTCGCTCCGTAACCGGGTCCA 408 Query 378 TGTCGATGTCGGGTCCGATTTACGCAACGGAGAGTCTGA---GCGGGTCGAGCACACCGT 434 |||| |||||||||||||||||||||||||||||||| | | ||||||| |||||||| Sbjct 409 TGTCAATGTCGGGTCCGATTTACGCAACGGAGAGTCTAATAAGTGGGTCGAACACACCGT 468 Query 435 ACCGTACGACGACGACAAATAGACCTTCGTCGGGACCTATAGCGGGAACATTGACGCCGG 494 | ||||| || |||| || | ||||||||||||||||||||||||||||||||||||| Sbjct 469 ATCGTACAACAACGAGTAA-A--CCTTCGTCGGGACCTATAGCGGGAACATTGACGCCGG 525 Query 495 CGAGGAGAGGTGACGTGGCGAACCCATATCTGAGCTTACGAGAGCTAAACATGGACCAGC 554 |||||| |||||||||||||| || |||||||||||||||||||| |||||||| |||| Sbjct 526 CGAGGAAAGGTGACGTGGCGATTCCTTATCTGAGCTTACGAGAGCTTAACATGGAGCAGC 585 Query 555 CACAGAGGATTTCTATCTCTTCTTCCCCCATTTACTTGGTCACGTAAAAAGTTAACAACC 614 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 586 CACAGAGGATTTCTATCTCTTCTTCCCCAATTTACTTGGTCACGTAAAAAGTTAACAACT 645 Query 615 CCTTACAAAAAAGAATAATTTAACTTTTCTTTTTGGTCGGGGGAAAAA-ATTCAATAGGA 673 ||||||||||| ||| |||||||||||||||||||||||||| ||||| ||||||||| | Sbjct 646 CCTTACAAAAA-GAACAATTTAACTTTTCTTTTTGGTCGGGG-AAAAATATTCAATAGAA 703 Query 674 AAATGTGATGTTTCATCTATCTTTTTGCAACT-GGTGAAAGCTGCAACAAAGTTTCATCT 732 ||||||||||||||||||||||||| || | |||||||||||||| | ||||||||| Sbjct 704 AAATGTGATGTTTCATCTATCTTTTCAAAATTTGGTGAAAGCTGCAA-A--GTTTCATCT 760 Query 733 ATCTCACGTGAATCAATCTAGTTGCCTCTTTTT 765 ||||||||||||||||| ||||||||||||||| Sbjct 761 ATCTCACGTGAATCAATTTAGTTGCCTCTTTTT 793 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37524907809 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5