BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478003
Length=772
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06840.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1088 0.0
> AT3G06840.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G49170.1);
Has 33 Blast hits to 33 proteins in 9 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:2156862-2157850
FORWARD LENGTH=858
Length=858
Score = 1088 bits (589), Expect = 0.0
Identities = 701/753 (93%), Gaps = 15/753 (2%)
Strand=Plus/Plus
Query 19 AAACGACCTCGGAAGAAAAATGTCCAACATTTCCCCAATCTTCACCATCTCCAACTCTCA 78
||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 50 AAACGACCTCGTAAGAAAAATGTCAAACATTTCCCCAATCTTCTCCATCTCCAACTCTCA 109
Query 79 ACATTTCAGCGACTATGGCTTCGATCCCCAGCTCCACTACTTTCAGGTTATGGAAGAAGC 138
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 110 ACATTTCAGCGACTATGGCTTCGATCCCCAACTCCACTACTTTCAGGTTATGGAAGAAGC 169
Query 139 GAGGAAGCATAAGAGAGAAACGTCATCAAAATCATACATGAACGGTCTTCAATTCAAGAT 198
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 170 GAGGAAGCATAAGAGAGAAACGTCATCAAAATCATACACGAACGGTCTTCAATTCAAGAT 229
Query 199 CCAGAAACCCATTTCAAAAGACAACCCGACCCGGTCCACAATGCACAACGACAAGAAGAA 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 230 CCAGAAACCCATTTCAAAAGACAACCCGACCCGGTCCACAATGCACAACGACAAGAAGAA 289
Query 259 GAAACGGTGTTGGTGGAAGAAAGCTTTGCCTTTCTTCAAATGGCGGAAATGGCCAATCTC 318
||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||
Sbjct 290 GAAACGGTGTTGGTGGAAGAAAGCTCTCCCTTTTTTCAAATGGCGGAAATGGCCAATCTC 349
Query 319 CACCGTCGGCGTGAACGAAGATCGTAGGG-CTAGAAATTTTGGCGCCGTAACCGGGTCGA 377
||||||||||||||||||||||||||||| | || || ||| || ||||||||||||| |
Sbjct 350 CACCGTCGGCGTGAACGAAGATCGTAGGGTC-AGGAACTTTCGCTCCGTAACCGGGTCCA 408
Query 378 TGTCGATGTCGGGTCCGATTTACGCAACGGAGAGTCTGA---GCGGGTCGAGCACACCGT 434
|||| |||||||||||||||||||||||||||||||| | | ||||||| ||||||||
Sbjct 409 TGTCAATGTCGGGTCCGATTTACGCAACGGAGAGTCTAATAAGTGGGTCGAACACACCGT 468
Query 435 ACCGTACGACGACGACAAATAGACCTTCGTCGGGACCTATAGCGGGAACATTGACGCCGG 494
| ||||| || |||| || | |||||||||||||||||||||||||||||||||||||
Sbjct 469 ATCGTACAACAACGAGTAA-A--CCTTCGTCGGGACCTATAGCGGGAACATTGACGCCGG 525
Query 495 CGAGGAGAGGTGACGTGGCGAACCCATATCTGAGCTTACGAGAGCTAAACATGGACCAGC 554
|||||| |||||||||||||| || |||||||||||||||||||| |||||||| ||||
Sbjct 526 CGAGGAAAGGTGACGTGGCGATTCCTTATCTGAGCTTACGAGAGCTTAACATGGAGCAGC 585
Query 555 CACAGAGGATTTCTATCTCTTCTTCCCCCATTTACTTGGTCACGTAAAAAGTTAACAACC 614
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 586 CACAGAGGATTTCTATCTCTTCTTCCCCAATTTACTTGGTCACGTAAAAAGTTAACAACT 645
Query 615 CCTTACAAAAAAGAATAATTTAACTTTTCTTTTTGGTCGGGGGAAAAA-ATTCAATAGGA 673
||||||||||| ||| |||||||||||||||||||||||||| ||||| ||||||||| |
Sbjct 646 CCTTACAAAAA-GAACAATTTAACTTTTCTTTTTGGTCGGGG-AAAAATATTCAATAGAA 703
Query 674 AAATGTGATGTTTCATCTATCTTTTTGCAACT-GGTGAAAGCTGCAACAAAGTTTCATCT 732
||||||||||||||||||||||||| || | |||||||||||||| | |||||||||
Sbjct 704 AAATGTGATGTTTCATCTATCTTTTCAAAATTTGGTGAAAGCTGCAA-A--GTTTCATCT 760
Query 733 ATCTCACGTGAATCAATCTAGTTGCCTCTTTTT 765
||||||||||||||||| |||||||||||||||
Sbjct 761 ATCTCACGTGAATCAATTTAGTTGCCTCTTTTT 793
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37524907809
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5