BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478007
Length=1477
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06868.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2119 0.0
AT3G06870.1 | Symbols: | proline-rich family protein | chr3:21... 874 0.0
AT5G49100.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 193 5e-48
> AT3G06868.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT5G49100.1);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422;
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source:
NCBI BLink). | chr3:2167730-2169222 FORWARD LENGTH=1493
Length=1493
Score = 2119 bits (1147), Expect = 0.0
Identities = 1397/1507 (93%), Gaps = 60/1507 (4%)
Strand=Plus/Plus
Query 2 ctctctctctcAAAAGAAGCTGAATTCTTTCTTCGTTAGATGCCGTGAATCACAAACAGA 61
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 16 CTCTCTCTCTCAAAAGAAGCTGAATTCTTTCTTCGTTTGATGCCGTGAATCACAAACAGA 75
Query 62 AACAGAGGAACAAAGAGAGAACTTCACTATCTTGATTCTTTCTTCTTCTTGCTTGCTTCT 121
|||||||||| |||||| ||||||| ||||||||||||||||||||||| || |||||
Sbjct 76 AACAGAGGAA-TCAGAGAGTACTTCACCATCTTGATTCTTTCTTCTTCTTGTTTCCTTCT 134
Query 122 TTATTACAATGGTGGAGCTCAAAGAT---CAAGACATGGGAGAAGGTATGCAATGCATAA 178
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 135 TTATTACAATGGTGGAGCTCAAAGATCAACAAGACATGGGAGAAGGTATGCAATGCATTA 194
Query 179 GACATCCTTACACAAAGAACCCAGGTGGGATCTGTGCTTTATGTCTCCAGGAAAAGCTTG 238
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 195 CACATCCTTACACAAAGAACCCAGGTGGGATCTGTGCTTTATGTCTCCAGGAAAAGCTTG 254
Query 239 GTAAGCTCGTCACTTCCTCTTTCCCTGTTCCAAAACCCAACCatctctcttcttcttctc 298
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 255 GTAAGCTCGTCACTTCCTCTTTCCCTGTTCCTAAACCCAACCATCTCTCTTCTTCTTCTC 314
Query 299 ctaaatccttcactccttccaccacatcatctctcgctctgtctctctcATCGGGAAGCA 358
|||||||||||||||||||||| || | ||||||||||||||||||||||||| |||||
Sbjct 315 CTAAATCCTTCACTCCTTCCACGAC--C-TCTCTCGCTCTGTCTCTCTCATCGGCAAGCA 371
Query 359 ATGGCAGAGACTCCACTAACAACAACAATCTCCCGTTTCTTCTGGCTAAGAAGAAGAAGA 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 ATGGCAGAGACTCCACTAACAACAACAATCTCCCGTTTCTTCTGGCTAAGAAGAAGAAGA 431
Query 419 ACATGCTCGCAGcttcttcttcctcttcttcttcctcctcttcgtcttcttcGGCTAATC 478
|||||||||||||||||||||| ||||||||||| ||||||||||||||||| || ||||
Sbjct 432 ACATGCTCGCAGCTTCTTCTTCATCTTCTTCTTCTTCCTCTTCGTCTTCTTCTGCGAATC 491
Query 479 TTATCTACAAGAGAAGCAAATCGACTGCTGCTGCTTATGGTGAGAGTTTCAGCCAGAGGA 538
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 492 TTATCTACAAGAGAAGCAAATCGACTGCTGCTGCTTACGGTGAGAGTTTCAGCCAAAGGA 551
Query 539 AACGAAGTGGGTTCTGGTCGTTTCTT-CACCTCTACTCTTCAAAACATCAGATCAGTAAC 597
||||||||||||| ||||| ||| || || |||||||||||||||||||||||||| |||
Sbjct 552 AACGAAGTGGGTTTTGGTC-TTTTTTCCATCTCTACTCTTCAAAACATCAGATCAGCAAC 610
Query 598 ACCACCAAAAAAGTCGATAACTTTAGCCATTCAAGGAGGAACCAGAGAACAGAGTCAACA 657
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 611 ACCACCAAAAAAGTCGATAACTTTAGCCATTTAAGGAGGAACCAGAGAACAGAGTCAAAA 670
Query 658 ACAGAGACTTCTTCGAAGAGGGTCGGTGGTGGTGGAGGCATTGATGTGATAGTTGAGGAA 717
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 ACAGAGACTTCTTCCATGAGGGTCGGTGGTGGTGGAGGCATTGATGTGATAGTTGAGGAA 730
Query 718 GAAGATGAGAGTCCTCCTAACAAAGTGGTTTCAGAAACGCCAACAAAtggtggtataggt 777
||||||||||| |||||||||||||||||||||||||||||| || ||||||||||
Sbjct 731 GAAGATGAGAG---TCCTAACAAAGTGGTTTCAGAAACGCCAACGAA---TGGTATAGGT 784
Query 778 ggtggtggtggtTCGTCTTTTGGGAGGAAAGTGTTGAGATCTAGATCTGTTGGTTGTGGA 837
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 785 GGTGGTGGTGGTTCGTCGTTTGGGAGGAAAGTGTTGAGATCTAGATCTGTTGGTTGTGGT 844
Query 838 AGTAGAAGCTTCTCTGGTGATTTCTTTGAGAGGATCTCTAATGGGTTTGGTGATTGTGCC 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 845 AGTAGAAGCTTCTCTGGTGATTTCTTTGAGAGGATCTCTAATGGGTTTGGTGATTGTGCC 904
Query 898 TTGAGAAGGATTGAGTCACAGAGAGAAGCCACCAAGGTCATTAGTAATGGTGGTGGTGGT 957
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 905 TTGAGAAGGATTGAGTCACAGAGAGAAGCCACTAAGGTCATTAGTAATGGTGGTGGTGGT 964
Query 958 GAAGCAGCAAATGCGATGAATGAAATGGTCAAATGTGGTGGCATCTTTGGTGGGTTTATG 1017
||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 965 GAAGCAGCAGATGCAATGAGTGAAATGGTCAAATGTGGTGGCATCTTTGGTGGGTTTATG 1024
Query 1018 ATAATGACACcatcatctacatcatcatcaacaacatcatcaacggttggtcatcatcat 1077
|| |||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1025 ATCATGACATCATCATCTACAACATCATCAACAACATCATCAACGGTTGATCATCATCAT 1084
Query 1078 aatcatAAGATGGGGAACAGAAACTGGGGATGGGCTTTTGCAAGTCCAATGAGAGCCAAA 1137
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1085 AATCATAAGATGGGGAACAGAAACTGGGGATGGGCTTTCGCAAGTCCAATGAGAGCCAAA 1144
Query 1138 GCTACTACTACTACTCATAGAGGTCGTACCATTACAGAGTCTTCAGCTGACAACAAGAAC 1197
|||||| ||||| | ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1145 GCTACTGCTACT-C--ATAGAGGTCGTACCATTACAGAGTCCACAGCTGACAACAAGAAC 1201
Query 1198 ACATCTCCAAATTTGGACTCAATTCCTTCATTGTTGGCTTTGAAAAGCTGAAGCGAGA-G 1256
|||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||| |
Sbjct 1202 ACATCTTCAAATTTGGACTCAATCCCTTCATTGTTGGCTTTGAAAAGCTAAAGCGAGATG 1261
Query 1257 --ATG-C-AT-TACT-A-AGT---AAT--A-----TTTC-AT-T--CAT----GTGTTTT 1291
|| | | |||| | | | ||| | |||| || | ||| |||||||
Sbjct 1262 GCATTACTAAGTACTTATAATCCGAATTTAGAGAATTTCCATATTTCATTCATGTGTTTT 1321
Query 1292 TAGTTAGGCTGTTCTTTCGTTCTTTGGACATTGGCTTGATCTTTTAATGTAATGTCACAC 1351
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1322 TAGTTAGGTTGTTCTTTCGTTCTTTGGACATTGGCTTGATCTTTTAATGTAATGTCACAC 1381
Query 1352 TATTTTCTTGTTCATTTCTATGTTTGGCATCTT-GGTTATATGTTTGTTGTTGTTCATTA 1410
||||||||||||| ||||||||||||||||||| ||||||||||| || ||| |
Sbjct 1382 TATTTTCTTGTTCCTTTCTATGTTTGGCATCTTTGGTTATATGTTA-TT------CAT-A 1433
Query 1411 TCACACAAGCTTGAAACCTTTAGGAGAATGAGCTTAGGATACTTGCTGCTTTGTCTTTTA 1470
| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1434 --A-----GCTTGAAACCTTTAGGAGAATGAGCTTAGGATACTTGCTGCTTTGTCTTTTA 1486
Query 1471 CTCTTCT 1477
|||||||
Sbjct 1487 CTCTTCT 1493
> AT3G06870.1 | Symbols: | proline-rich family protein | chr3:2167847-2168960
REVERSE LENGTH=931
Length=931
Score = 874 bits (473), Expect = 0.0
Identities = 534/562 (95%), Gaps = 9/562 (2%)
Strand=Plus/Minus
Query 666 TTCTTCGAAGAGGGTCGGTGGTGGTGGAGGCATTGATGTGATAGTTGAGGAAGAAGATGA 725
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 553 TTCTTCCATGAGGGTCGGTGGTGGTGGAGGCATTGATGTGATAGTTGAGGAAGAAGATGA 494
Query 726 GAGTCCTCCTAACAAAGTGGTTTCAGAAACGCCAACAAAtggtggtataggtggtggtgg 785
||| |||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 493 GAG---TCCTAACAAAGTGGTTTCAGAAACGCCAACGAA---TGGTATAGGTGGTGGTGG 440
Query 786 tggtTCGTCTTTTGGGAGGAAAGTGTTGAGATCTAGATCTGTTGGTTGTGGAAGTAGAAG 845
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 439 TGGTTCGTCGTTTGGGAGGAAAGTGTTGAGATCTAGATCTGTTGGTTGTGGTAGTAGAAG 380
Query 846 CTTCTCTGGTGATTTCTTTGAGAGGATCTCTAATGGGTTTGGTGATTGTGCCTTGAGAAG 905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 CTTCTCTGGTGATTTCTTTGAGAGGATCTCTAATGGGTTTGGTGATTGTGCCTTGAGAAG 320
Query 906 GATTGAGTCACAGAGAGAAGCCACCAAGGTCATTAGTAATGGTGGTGGTGGTGAAGCAGC 965
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 319 GATTGAGTCACAGAGAGAAGCCACTAAGGTCATTAGTAATGGTGGTGGTGGTGAAGCAGC 260
Query 966 AAATGCGATGAATGAAATGGTCAAATGTGGTGGCATCTTTGGTGGGTTTATGATAATGAC 1025
| |||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 259 AGATGCAATGAGTGAAATGGTCAAATGTGGTGGCATCTTTGGTGGGTTTATGATCATGAC 200
Query 1026 ACcatcatctacatcatcatcaacaacatcatcaacggttggtcatcatcataatcatAA 1085
| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 199 ATCATCATCTACAACATCATCAACAACATCATCAACGGTTGATCATCATCATAATCATAA 140
Query 1086 GATGGGGAACAGAAACTGGGGATGGGCTTTTGCAAGTCCAATGAGAGCCAAAGCTACTAC 1145
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 139 GATGGGGAACAGAAACTGGGGATGGGCTTTCGCAAGTCCAATGAGAGCCAAAGCTACTGC 80
Query 1146 TACTACTCATAGAGGTCGTACCATTACAGAGTCTTCAGCTGACAACAAGAACACATCTCC 1205
|||| | ||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 79 TACT-C--ATAGAGGTCGTACCATTACAGAGTCCACAGCTGACAACAAGAACACATCTTC 23
Query 1206 AAATTTGGACTCAATTCCTTCA 1227
||||||||||||||| ||||||
Sbjct 22 AAATTTGGACTCAATCCCTTCA 1
Score = 604 bits (327), Expect = 6e-172
Identities = 364/381 (96%), Gaps = 6/381 (2%)
Strand=Plus/Minus
Query 105 TCTTCTTGCTTGCTTCTTTATTACAATGGTGGAGCTCAAAGAT---CAAGACATGGGAGA 161
|||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 931 TCTTCTTGTTTCCTTCTTTATTACAATGGTGGAGCTCAAAGATCAACAAGACATGGGAGA 872
Query 162 AGGTATGCAATGCATAAGACATCCTTACACAAAGAACCCAGGTGGGATCTGTGCTTTATG 221
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 871 AGGTATGCAATGCATTACACATCCTTACACAAAGAACCCAGGTGGGATCTGTGCTTTATG 812
Query 222 TCTCCAGGAAAAGCTTGGTAAGCTCGTCACTTCCTCTTTCCCTGTTCCAAAACCCAACCa 281
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 811 TCTCCAGGAAAAGCTTGGTAAGCTCGTCACTTCCTCTTTCCCTGTTCCTAAACCCAACCA 752
Query 282 tctctcttcttcttctcctaaatccttcactccttccaccacatcatctctcgctctgtc 341
||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||
Sbjct 751 TCTCTCTTCTTCTTCTCCTAAATCCTTCACTCCTTCCACGAC--C-TCTCTCGCTCTGTC 695
Query 342 tctctcATCGGGAAGCAATGGCAGAGACTCCACTAACAACAACAATCTCCCGTTTCTTCT 401
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 694 TCTCTCATCGGCAAGCAATGGCAGAGACTCCACTAACAACAACAATCTCCCGTTTCTTCT 635
Query 402 GGCTAAGAAGAAGAAGAACATGCTCGCAGcttcttcttcctcttcttcttcctcctcttc 461
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 634 GGCTAAGAAGAAGAAGAACATGCTCGCAGCTTCTTCTTCATCTTCTTCTTCTTCCTCTTC 575
Query 462 gtcttcttcGGCTAATCTTAT 482
||||||||| || ||||||||
Sbjct 574 GTCTTCTTCTGCGAATCTTAT 554
> AT5G49100.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G06868.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:19897370-19899114 REVERSE LENGTH=1745
Length=1745
Score = 193 bits (104), Expect = 5e-48
Identities = 214/265 (81%), Gaps = 16/265 (6%)
Strand=Plus/Plus
Query 801 GAGGAAAGTGTTGAGATCTAGATCTGTTGGTTGTGGAAGTAGAAGCTTCTCTGGTGATTT 860
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 929 GAGGAAAGTGTCGAGATCTAGATCTGTTGGGTGTGGAAGTAGAAGCTTCTCTGGTGATTT 988
Query 861 CTTTGAGAGGATCTCTAATGGGTTTGGTGATTGTGCCTTGAGAAG-GATTGAGTCACAGA 919
||||||||||||| | ||||||||||| |||||| | |||||||| | ||||||||||||
Sbjct 989 CTTTGAGAGGATCACAAATGGGTTTGGAGATTGTACTTTGAGAAGAG-TTGAGTCACAGA 1047
Query 920 GAGAAGCCACCAAGGTCATTAG-TAATGGTGGTG-GTGGTGAAGC--AGCAAATGCGATG 975
|||||| | || || || ||| ||| || || || | || || || | ||
Sbjct 1048 GAGAAGGTAATAATAACAA-AGGTAACAA-GGTCAGTAGT-AACCCTAGTAA-TG-G-TG 1101
Query 976 A-ATGA-A-ATGGTCAAATGTGGTGGCATCTTTGGTGGGTTTATGATAATGACACcatca 1032
| || | ||||| | ||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1102 TTA-GAGAGATGGTGAGATGTGGTGGGATCTTTGGTGGGTTTATGATAATGACGTCATCG 1160
Query 1033 tctacatcatcatcaacaacatcat 1057
||| | || ||||| || ||||||
Sbjct 1161 TCTTCTTCTTCATCTTCATCATCAT 1185
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72840990795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5