BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478008
Length=3335
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06880.2 | Symbols: | Transducin/WD40 repeat-like superfami... 1567 0.0
> AT3G06880.2 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr3:2170355-2175686 REVERSE LENGTH=3956
Length=3956
Score = 1567 bits (848), Expect = 0.0
Identities = 986/1052 (94%), Gaps = 12/1052 (1%)
Strand=Plus/Plus
Query 738 AACCTGTGAGGAAGATTACAATCCAGAGCTTGGAAAAAGTACAAGAGTCAGATGCCTTAA 797
|||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 883 AACCTG-CAGGAAGATTACAATGCAGAGCCTGGAAAAAGTACAAGAGTCAGATGCCTTAA 941
Query 798 TGAATTCTTGAACGAGTCTCAGCTAGATACTAGAGAAGACGTTGGCACGGACACATTAGC 857
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 942 TGAATTCTTGAACGAGTCTCAGCCAGATACTAGAGAAGACATTGGCACGGACACATTAGC 1001
Query 858 AAACATCTTCTGTGTTTCCCAACAACAAGCTCACAAGGAAG----C--A---TATAATGA 908
||||||||||||||||||||||||||||||||||||||||| | | ||||||||
Sbjct 1002 AAACATCTTCTGTGTTTCCCAACAACAAGCTCACAAGGAAGCAAACAAAGCTTATAATGA 1061
Query 909 GGACACATTAGCCAACAGATCCCGCAGTTCTATCGGTAATTTTAACCATTCCATCTTTGA 968
|||||||||||||||||||||| |||||| ||||||||||||||||| ||| ||||||||
Sbjct 1062 GGACACATTAGCCAACAGATCCAGCAGTTTTATCGGTAATTTTAACCGTTCTATCTTTGA 1121
Query 969 TATTCAGGATCAACAATCAAAGACAAATTTGTATACCCACTTAGAAGATGCCTCTTCTTT 1028
||||||| ||||||||||||||||| || | ||||||||||||||||||| ||||||||
Sbjct 1122 AATTCAGGCTCAACAATCAAAGACAACTTGGAATACCCACTTAGAAGATGCATCTTCTTT 1181
Query 1029 GAGGCAACTAGATTTGGAAGAAATCTCAGTATTTGGACATAAAGGGTCCATAACTTTTGA 1088
|||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||
Sbjct 1182 GAGGCAACTAGATTTGGAAGAAATATCAGTATTTGGACAAAAAGGGTCCATAAGTTTTGA 1241
Query 1089 AGCAATGAGGAGAAATTTGCAGACCAAAAAACGAGGAAATGGGCATGAAACGCATTCTAG 1148
|| ||||||||||||||||||||||||||||||||| ||||| | ||| |||| ||||||
Sbjct 1242 AGGAATGAGGAGAAATTTGCAGACCAAAAAACGAGGGAATGGACTTGAGACGCTTTCTAG 1301
Query 1149 AAGAGCTCCAACAATGGATTTATGGAAGAACCTTCAGAGCTTGATTAAGGAAGTGTTAGG 1208
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 1302 AAGAGCTCCAACAATGGATTTATGGATGAACCTTCAGAGCTTGATAAAGGAAGTGTTAGG 1361
Query 1209 GAATGCAGATGAGAAATATGTCTCAGAGGTTACAATGATATATCAAATGCTGAATAGAAA 1268
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1362 GAATGCAGATGAGAAATATGTCTCAGAGGTTACAATGATATATCAAATGCTGAACAGGAA 1421
Query 1269 AGAAGGATTCAAATATAGAATGCTAAAAGATGTCATACTGGATCAGCTGTTTACGGCTAT 1328
|||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1422 AGAAGGATTCAAGTATAGCATGCTAAAAGATGTCATTCTGGATCAGCTGTTTACGGCTAT 1481
Query 1329 TTCTAATTCCGAGGAGAAAACCGTGATTAAAGCATCGATGACCGCACTTACCAAGATCAT 1388
||||| |||||||||||| ||||||||||| || |||||||| |||||||||||||||||
Sbjct 1482 TTCTAGTTCCGAGGAGAAGACCGTGATTAAGGCGTCGATGACGGCACTTACCAAGATCAT 1541
Query 1389 ATCAGTCAATAGAACAGCTCTCGAGGAGGTCAAGAGGAAAGGTTTAAATCTAAGTCATTT 1448
|||||| |||||||||||||| ||||||||||| ||||| ||||||||| ||||||||||
Sbjct 1542 ATCAGTTAATAGAACAGCTCTTGAGGAGGTCAAAAGGAAGGGTTTAAATTTAAGTCATTT 1601
Query 1449 AGCAAATGCTCTGAAACAAAATGTGCAAGAAGCAGCTATTCTCATCTACCTGATAAAGCC 1508
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1602 AGCAAATGCTCTCAAACAAAATGTGCAAGAAGCAGCTATTCTCATCTACCTGATAAAGCC 1661
Query 1509 ATCTCCAACAGAAATAAAGAGTCTTGAGCTATTACCAGCTCTTGTAGATGTTGTTGCATC 1568
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1662 ATCTCCAACAGAAATAAAGAGTCTTGAGCTTTTACCAGCTCTTGTTGATGTTGTTGCATC 1721
Query 1569 CACTTCTTCTTCCCCTTCTTCTTACACATTTAGACCTTCACCGCCTCT-TTTGACGCCCC 1627
|||||||||||| |||||| ||||||||||| ||||||||| || | ||||||||| |
Sbjct 1722 CACTTCTTCTTCATCTTCTTGTTACACATTTATACCTTCACCTTCT-TATTTGACGCCGC 1780
Query 1628 CTGCAGCATCATTGATGATAATTGAAGTGCTTATTACTGCTTTTGATCATGCTACAAACA 1687
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1781 CTGCAGCATCATTGATGATAATTGAAGTGCTTATCACTGCTTTTGATCATGCTACAAACA 1840
Query 1688 CAATGCACTTGGCTGCAATCAGCTCTCCTTCTGTCCTTTGTGGACTTCTGGACGTTGCAA 1747
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1841 CAATGCACTTGGCTGCAATCAGCTCTCCTTCTGTCCTTTGTGGACTTCTTGATGTTGCAA 1900
Query 1748 AGAGTGGAAACTCAGGGGAATTCATCTCCTTG 1779
||||||||||||||||||||||||||||||||
Sbjct 1901 AGAGTGGAAACTCAGGGGAATTCATCTCCTTG 1932
Score = 1206 bits (653), Expect = 0.0
Identities = 708/735 (96%), Gaps = 1/735 (0%)
Strand=Plus/Plus
Query 2532 AGAGATGCATCAATCTGGAAGTGGAGCTGTAACAGCACTCATCTACCATAAAGGCTTGCT 2591
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2931 AGAGATGCATCAATCTGGCAGTGGAGCTGTAACAGCACTCATCTACCATAAAGGCTTGCT 2990
Query 2592 CTTTAGTGGATACTCAGATGGTTCAATCAGGGTGTGGAATGTGAATAAGAAATTAGCTAC 2651
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2991 CTTTAGTGGATTCTCAGATGGTTCAATCAGGGTGTGGAATGTGAATAAGAAAATAGCTAC 3050
Query 2652 AATTTTATGGGACATCAAGGAGCACAAAAGCACAGTAACATGCTTTTCACTCTCTGAAGC 2711
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 3051 GCTTTTATGGGACATCAAGGAGCACAAAAGCACAGTAACATGCTTTTCACTCTCTGAAAC 3110
Query 2712 AGGGGAGAGTGTCTTAAGTGGATCTGCAGATAAAACTATCAGGGCATGGCAGATAGTTAA 2771
||| ||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 3111 AGGAGAGTGTGTCTTAAGTGGATCAGCAGATAAAACTATCAGGGTATGGCAGATAGTTAA 3170
Query 2772 AGGAAAACTGGAATGTGCTGAAGTCATAAAAACAAAAGATTCAATAAGGAAACTGGAAGC 2831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3171 AGGAAAACTGGAATGTGCTGAAGTCATAAAAACAAAAGATTCAATAAGGAAACTGGAAGC 3230
Query 2832 ATTCGGAAGTATGATCTTTGTAATAACCAAAGGGCAGAAGATGAAGCTGCTTGATTCATT 2891
|||||||| |||||||||||| ||||| |||||||| ||||||||||||||||||||||
Sbjct 3231 ATTCGGAAATATGATCTTTGTTATAACAAAAGGGCACAAGATGAAGCTGCTTGATTCATC 3290
Query 2892 AAGAACATCTCAAAGTATCTTCAAAGGTAAAGGTGTGAAGAGTATGGTAGCAGCTCAAGG 2951
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 3291 AAGAATATCTCAAAGTATCTTCAAAGGTAAAGGTGTGAAGAGTATGGTATCAGCTCAAGG 3350
Query 2952 AAAGATTTATATAGGATGCATAGATACAAGCATACAGGAATTAATTGTTACAAATAAACG 3011
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 3351 AAAGATTTATATAGGATGCATAGATACAAGTATACAGGAATTAATTGTTGCAAATAAACG 3410
Query 3012 GGAGAAAGAGATCAAAGCACCGACGAGGAGCTGGAGAATTCAAAACAAGCCTATCAATTC 3071
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 3411 GGAGAAAGAGATTAAAGCACCGACGAGGAGCTGGAGACTTCAAAACAAGCCTATCAATTC 3470
Query 3072 AGTGGTTGTGTACAAAGATATGTTATATAGCTCAAGTACACATGTTGAGATGTCTAATAT 3131
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 3471 AGTGGTTGTGTACAAAGATATGTTATATAGCTCAAGCACATATGTTGAGATGTCTAATAT 3530
Query 3132 AAAGGATTTGAGAAGGAATTATGAGCCCCAAATGTCAATAACAGCAGAAAAGGGGTCTAA 3191
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 3531 AAAGGATCTGAGAAGGAACTATGAGCCCCAAATGTCAATAACAGCAGAAAAGGGGTCTAA 3590
Query 3192 TATAGTAGCAATGGGTGTGGTTGAAGACTTCATCTACCTGAATCGAAGTTCATCCGCAAA 3251
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 3591 TATAGTAGCAATGGGTGTTGTTGAAGACTTCATCTACCTGAATCGAAGTTCATCCGCAAA 3650
Query 3252 CACTCTTCAGCATTT 3266
|||||||||| ||||
Sbjct 3651 CACTCTTCAG-ATTT 3664
Score = 1162 bits (629), Expect = 0.0
Identities = 715/756 (95%), Gaps = 7/756 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTACCTTTCATCTTCTCAATCGAGTTTTATCTCATGTAATGAGAATTCATCTCTT 60
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1 ATGGCTTACCTTTCATCTTCTCAATCGACTTTTATCTCATGTAGTGAGAATTCATCTCTT 60
Query 61 GACTCGATTCTAGTTTCGATCAACGACTACATTCTTGGCGTGATATCAGACCCCGAAGCA 120
|| |||||||||||||| ||||||| |||||| || ||||| ||||||||||| ||||||
Sbjct 61 GATTCGATTCTAGTTTCAATCAACGTCTACATCCTCGGCGTCATATCAGACCCTGAAGCA 120
Query 121 TGGATTTCGCTTAAGAAGAAATGCATCACATTGCTCAGCATTGAAGAAGATAACACTCTG 180
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 TGGATTTCGCTTAAGCAGAAATGCATCACATTGCTCAGCATTGAAGAAGATAATACTCTG 180
Query 181 TTTGATGATTTCTCTTCTGAACACTCTGCTCTCTCGAATCTCTATTGGGGAATCGATAGC 240
||||| | ||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 TTTGA--A-TTCTCCTCTGAACACTCTGCTCTCTCCAATCTCTATTGGGGAATCGATAGC 237
Query 241 ATCGAAACGTCTATACACCCCGAATGCTCAGAAGAGAAGACGTCTCGTCTGAGAAACTCA 300
|||||| | |||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 238 ATCGAAGCTTCTATACATCCCGAATGCTCAGAAGAAAAGACGTCTCGTCTGAGAAACTCA 297
Query 301 GAGAGAATGCTTCAAATGCCTGCGTTGCTTGACGAACAAGGGACCACTACTTCTGGTGTT 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 298 GAGAGAATGCTTCAAATGCCTGCGTTGCTTGACGAACAAGGGACCACCACTTCTGGTGTT 357
Query 361 CCAAACACAATCTTGGTTTCTTTCTCTTACTTTTACCCCTCCATTGTAAGCTATCTCCAA 420
||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 358 CCAAACACAGTCTTGATTTCTTTCTCTTACTTTTACCTCTCCATTGTAAGCTATCTTCAA 417
Query 421 GGTGATTCCTTGCAGTCCACATTGCACTTTCTCCAGTCAGTTTTGGTCTCGCCGGAAATT 480
|||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| |||
Sbjct 418 GGTGATTCCTTGCAGTCCACATTGCATTTTCTGCAGTCGGTTTTGGTCTCGCCGGAGATT 477
Query 481 GTAAGAACCGACATTGCCCCTGAACTTTGCGAGAGCATTTTCTTCACTCCTGGTGTGTAC 540
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 478 GTAAGAACCGACATTGCCCCTGAACTCTGCGAGAGCATTTTCTTCACTCCTGGTGTGTAC 537
Query 541 AAGTCAGATGAAGAGATCAGAGAGATTGCAAGAAAGTATAAATACAGAGCAACTTATTAC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 AAGTCAGATGAAGAGATCAGAGAGATTGCAAGAAAGTATAAATACAGAGCAACTTATTAC 597
Query 601 CAGGTTATGTCCTATGGAGAGACTCATCAGCCGCCACGTGAATGTACAGAGA-AGCCGCT 659
|| ||||||||||||||||||||||||||||||||||||||||||| ||||| | ||| |
Sbjct 598 CAAGTTATGTCCTATGGAGAGACTCATCAGCCGCCACGTGAATGTATAGAGACA-CCGGT 656
Query 660 TAGAAGTCAGAAGAAATATGGGCAAGAATTATTTGCGGCTAATGCACATTCAGTTGCAGA 719
|||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 657 TAGAAGGCAGAAGGAATATGGGCAAGAAATATTTGCGGCTAATGCACATTCAGTTGCAGA 716
Query 720 GAAGCTAGAGTTGTCAGAAACCTGTGAGGAAGATTA 755
||||||||||||||||||||| |||||| ||| |||
Sbjct 717 GAAGCTAGAGTTGTCAGAAACTTGTGAG-AAG-TTA 750
Score = 981 bits (531), Expect = 0.0
Identities = 573/594 (96%), Gaps = 0/594 (0%)
Strand=Plus/Plus
Query 1940 AGGGTGATCACAAACTCTTTGCAGCAGATATATTGCTTCAGTTGAATGCACTGGATTCCC 1999
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 2183 AGGGTGATCACAAACTCTTTGCAGCAGATATATTGCTTCAGTTAAATGCACTGGATTCTC 2242
Query 2000 CACCTGAGAACAAAAAGTACAGAAATGAAGCTACCAGAGCTCTACTTGATGCAGTTACAT 2059
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2243 CACCTGAGAACAAAAAGTACAGAAATGAAGCTACCAGAGCTCTACTTGATGCAGTTACAT 2302
Query 2060 ATAGTGAAGGTTCAAATATGCAGCTTTTATCAACATTGATACTTTCGAATATTGGTGGAA 2119
|||||||||||||||||||||||||||||||||| || || ||| ||||||| |||||||
Sbjct 2303 ATAGTGAAGGTTCAAATATGCAGCTTTTATCAACGTTCATTCTTGCGAATATCGGTGGAA 2362
Query 2120 CTTATTCATGGACAGGAGAACCATACACTGATGCTTGGCTAATGAAAAGAGGAGGTCTAA 2179
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 2363 CTTATTCATGGACAGGAGAACCTTACACTGCTGCTTGGCTAATGAAAAGAGGAGGTCTAA 2422
Query 2180 CTTCTATGTCACATATGAATATGATAAGAAACATCAATTGGTCAGATGAATGCTTACAGG 2239
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 2423 CTTCTATGTCACATATGAATATGATAAGAAACATCAACTGGTCAGATGAATGCTTGCAGG 2482
Query 2240 ATCCAGGAATAGATGGATGGTGTTGTAAAATAGCAAGACGAATTATTGATACAGGCAAAG 2299
|| ||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||
Sbjct 2483 ATACAGGAATAGATGGATGGTGTTGTAAGATAGCTAGAAGAATTATTGATACAGGCAAAG 2542
Query 2300 CCACGTTTTGTGGTTTACAAGAAGGGCTAAAGAGTCAGAACAAGAGTGTTTCAAAAGCAT 2359
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 2543 CCACGTTTTGTGGTTTACAAGAAGGGCTAAAGAGTAAAAACAAGAGTGTTTCAAAAGCAT 2602
Query 2360 GTCTTATAGCCATTGCATGGCTCAGTATAGAGATTTCAAAAGGTCCAAATAGTTTAAAAT 2419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2603 GTCTTATAGCCATTGCATGGCTCAGTATAGAGATTTCAAAAGGTCCAAATAGTTTAAAAT 2662
Query 2420 ACTCAGCATGTGAAGTCTTACTTGATGAGATAGCACAATTTCTACACCCTGGTTTGGAGC 2479
|||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 2663 ACTCAGCATGTGAAGTTTTACTTGATGAGGTAGCACAATTTCTCCACCCTGGTTTGGAGC 2722
Query 2480 TTGAAGAAAGACTTCTTGCTTGTATATGCATCTACAATTTTAGCTCTGGCAAAG 2533
|||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2723 TTGAAGAAAGACTTCTTGCTTGTATATGCATCTATAATTTTAGCTCTGGCAAAG 2776
Score = 176 bits (95), Expect = 1e-42
Identities = 152/176 (86%), Gaps = 17/176 (10%)
Strand=Plus/Plus
Query 1784 GAAGTATATCTATCAGCATACTCGAGTGACTCGTTTTGCGCATCTCCTGCAAAGCAAAGA 1843
||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 1977 GAAGTATATTTATCAGCATACTCGAGTGGCTCCTTTTGCGCATCTCCTGCAAAGCAAAGA 2036
Query 1844 CCAAGAAGAAATGTGCATTGCTCTTCAATTTCTTCATGAAGTC--G----T-C-A-GCT- 1893
|||||||||||| |||||||||||||||||||||||||| ||| | | | | | |
Sbjct 2037 CCAAGAAGAAATTTGCATTGCTCTTCAATTTCTTCATGAGGTCCTGAAGATACCAAGGTC 2096
Query 1894 AT------T-AAGATTCTGCAGCAGATAAAGAAAGAAGGAAGTTTTGACATTAAGG 1942
|| | ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2097 ATCAGCAATCAAGATTCTGCAACAGATAAAGAAAGAAGGAAGTTTTGACATTAAGG 2152
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 165952247444
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5