BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg478009

Length=576
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G06890.1 | Symbols:  | unknown protein; Has 91 Blast hits to...   793    0.0  


> AT3G06890.1 | Symbols:  | unknown protein; Has 91 Blast hits 
to 91 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr3:2176856-2177586 FORWARD 
LENGTH=731
Length=731

 Score =  793 bits (429),  Expect = 0.0
 Identities = 522/564 (93%), Gaps = 18/564 (3%)
 Strand=Plus/Plus

Query  1    AAAAAACACACTCTCTGTGATTCACACTAAGTATC-AATGTATCAAGATCGGCAAGGCGT  59
            |||||| |||||||||| ||||||||||||||||| ||||||||||||||| ||||||||
Sbjct  57   AAAAAAAACACTCTCTGCGATTCACACTAAGTATCTAATGTATCAAGATCGTCAAGGCGT  116

Query  60   TGTAGGAGGCGGAGGCGGTGGCGGATCTGCGCCACACGGAATCATACTCGCCGTCGTTGT  119
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  117  TGTAGGAGGCGGAGGCGGTGGCGGTTCTGCGCCACACGGAATCATACTCGCCGTCGTTGT  176

Query  120  TGCATTGGTAGTGCTTGTTCCCTTCTTCATCGGAGACGGTGGTGAAGCCATTACAGATGC  179
            |||||| || ||||||||||| ||||||||||||||| ||||||| ||||||||||||||
Sbjct  177  TGCATTAGTGGTGCTTGTTCCGTTCTTCATCGGAGACAGTGGTGAGGCCATTACAGATGC  236

Query  180  GATCGCAGAGCTTCTTAGTCCGGTGGGACTTCTCTTACTTCCCATCATCCTCCTCCTCAC  239
            ||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||
Sbjct  237  GATCGCAGAGCTTCTTAGTCCGGTGGGACTTCTATTGCTTCCTATCATCCTCCTCCTCAC  296

Query  240  TATCCAGTTCCTCTCGTCGGAACGTGGTTCCTTCGTATCGGCCATTTTCTCCACCGGAGA  299
            ||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  297  TATACAGTTTCTCTCGTCGGAACGTGGTTCCTTCGTGTCGGCCATTTTCTCCACCGGAGA  356

Query  300  ACCCGAATCGATTCACCGGGTTAGCGGATCTCCCGTCGGTGTCGCTTTGTTCCTCGTACT  359
            ||| |||||||||||| ||||||||||||||||||| ||||| ||| | |||||||||||
Sbjct  357  ACCAGAATCGATTCACAGGGTTAGCGGATCTCCCGTGGGTGTTGCTCTCTTCCTCGTACT  416

Query  360  GATCTTGTTCTTACTCTACTACCGCTTCTCCATCTTCGGCGGAGATGATGGTTCCGATGA  419
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  417  GATCTTGTTCTTACTCTACTACCGCTTCTCTATCTTCGGCGGAGATGATGGTTCCGATGA  476

Query  420  CTGATGCGACGTCGTATTTTCAGATCTAGttttttccctctttttctttttt-gggagat  478
            ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| | 
Sbjct  477  CTGATGCGACGTCGTCTTTTCAGATCTAGTTTTTTCCCTCTTTTTCTTTTTTAGGGA-A-  534

Query  479  aacaatatatatatatttatgtctttctttattcgattttttgtttttattttattttGT  538
            |||||||||| | |||    ||||||    ||||||||||  ||||||||||||||||||
Sbjct  535  AACAATATAT-T-TAT----GTCTTT----ATTCGATTTTC-GTTTTTATTTTATTTTGT  583

Query  539  --GACAGTTGAA-GTCAAACTATA  559
              |||||||||| |||||||||||
Sbjct  584  TTGACAGTTGAAAGTCAAACTATA  607



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27679014997


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5