BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478015
Length=1171
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06950.1 | Symbols: | Pseudouridine synthase family protein... 1692 0.0
AT3G06960.1 | Symbols: PDE320, TGD4 | pigment defective 320 | c... 145 1e-33
> AT3G06950.1 | Symbols: | Pseudouridine synthase family protein
| chr3:2192685-2194321 FORWARD LENGTH=1223
Length=1223
Score = 1692 bits (916), Expect = 0.0
Identities = 1116/1206 (93%), Gaps = 40/1206 (3%)
Strand=Plus/Plus
Query 3 GCATAAAACCAAATCAATCTAATAACCATTGGTCCGGGCTGACCAATTTACCGCTCCCTA 62
|||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 7 GCATTAAACCAAATCAATCTAATAACCAATGGTCCGGTCTGACCAATTTACCGCTCCCTA 66
Query 63 ACTAACCGTATACGCACCGTTTTTATGTCCTTCCC----CA-A-TCTTGAGATTACACAG 116
||||||||||||||||||||||| | ||| ||||| || | ||||||||||||||||
Sbjct 67 ACTAACCGTATACGCACCGTTTTAAAGTCTTTCCCTAATCAGAATCTTGAGATTACACAG 126
Query 117 AGAG-C-G--CA--AA-C---gaagaagaagaagaaga-G--GA---------------T 148
|||| | | || || | ||||||||||||||||| | || |
Sbjct 127 AGAGACAGGGCAGCAAACAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAT 186
Query 149 GAGTTGCGCTACACGAGCGCTTCCTCCTTCACTCTTTACCAATGGGTCTCTTTCGTCTCC 208
|||||||| ||||| ||| |||||||||||||||||||| ||||||| ||||||||||||
Sbjct 187 GAGTTGCGTTACACCAGCACTTCCTCCTTCACTCTTTACTAATGGGTATCTTTCGTCTCC 246
Query 209 TCATAATATCTCCATGACCAACTTGAACAGTTTGGTAAAGGTTAGTGATTCTGGTGCTTA 268
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 247 TCAGAATATCTCCATGACCAACTTGAACAGTTCGGTAAAGGTTAGTGATTCTGGTGCTTA 306
Query 269 TAAATGGCGCCTTGTGATAGCCTACGATGGCACCCGTTTTGCAGGTTGGCAGTATCAGGA 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 TAAATGGCGCCTTGTGATAGCCTACGATGGCACCCGTTTTGCAGGTTGGCAGTATCAGGA 366
Query 329 GTCACCACCAACTATCCAATCAATGTTAGAGAAAGCCTTAATTCAGATAACGGAGCTCGG 388
|||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct 367 GTCACCACCAACTATCCAATCAATGTTAGAAAAAGCCTTAATTCAGATTACAGAGCTCGG 426
Query 389 AAGAAAAGAGCTTCATCTAATTGGAGCTGGCAGGACCGATGCAGGAGTTCACGCTTGGGG 448
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 427 TAGAAAAGAGCTTCAGCTTATTGGAGCTGGCAGGACCGATGCAGGAGTTCACGCTTGGGG 486
Query 449 TCAGGTTGCTCATTTTGTCACTCCTTTTAATTATACTAGTTTGGATAGCTTTCACGCTGC 508
|||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 487 TCAGGTAGCTCATTTTGTCACTCCTTTCAACTATACTAGTTTGGATAGCTTTCACGCTGC 546
Query 509 TTTAAACGGTCTTCTTCCTAAAGATATCCGTGTCAGAGAGCTGAGTGCAGCGGTTCCTGA 568
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 TTTGAACGGTCTTCTTCCTAAAGATATCCGTGTCAGAGAGCTGAGTGCAGCGGTTCCTGA 606
Query 569 GTTCCATGCTCGGTTTTCTGCC-CATAGCAAGGTTTACCGCTACCAAATTTACAACGACA 627
||| |||||||||||||||||| | |||||||||||| |||||||| || ||||||||||
Sbjct 607 GTTTCATGCTCGGTTTTCTGCCTC-TAGCAAGGTTTATCGCTACCAGATATACAACGACA 665
Query 628 CTTTCATGGACCCGTTCCAGCGTCATTGGGCATT-CCACTGTGCTTATAAACTGAATGCT 686
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 666 CTTTCATGGACCCGTTCCAGCGTCATTGGGC-TTACCACTGTGCTTATAAACTGAATGCT 724
Query 687 TCTAAAATGCGGGAAGCTGCAAATCTTTTTGTTGGAATGCATGATTTCTCTGCATTTGCT 746
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 725 TCTAAAATGCGGGAAGCTGCAAATCTTTTTGTTGGAAAGCATGATTTCTCTGCATTTGCT 784
Query 747 AACGCTACACGGGAAGATGGACTACCTGATCCTTTGAAAACTATATCTCGCTTCGATGTC 806
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 785 AACGCTACTCGGGAAGATGGAGTACCTGATCCTTTGAAAACTATATCTCGCTTCGATGTC 844
Query 807 ATTCAAATGGGATCTCTTCTACAGCTTGAAGTTGAAGGTTCAGGCTTTTTGTACAGACAA 866
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 845 ATTCAAATGGGATCTCTTCTACAGCTTGAAGTTGAAGGTTCTGGCTTTTTGTACAGACAA 904
Query 867 GTTAGAAACATGGTTGCTTTGTTGATTCAGATTGGAAAAGAAGCACTGGATTCAGACATT 926
|| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 905 GTCAGAAACATGGTAGCTTTGCTGATTCAGATTGGAAAAGAAGCACTGGATTCAGACATT 964
Query 927 GTCCCAATGATTCTGGAAACCAAAGACAGGAGGGTGCTTGCAAAGTATACTACTTTGCCT 986
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 965 GTCCCAATGATTCTCGAAACCAAAGACAGGAGGGTGCTTGCAAAGTATACTAGTTTGCCT 1024
Query 987 GCACCGCCTCATGGTCTTTGTCTTGTGTCTGTTAAGTACAGGGAATCTCATTTAAAGCTT 1046
|| |||||||||||||||||||||||||||||||||| | |||| |||| ||||||||
Sbjct 1025 GCGTCGCCTCATGGTCTTTGTCTTGTGTCTGTTAAGTATAAGGAAGATCATCTAAAGCTT 1084
Query 1047 CCATTGGATTGTCCTGTAACTAGTTTTGGTAGACATCACACTATAACAAAATGTAAACTT 1106
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1085 CCATTGGATTGTCCTGTTACTAGTTCTGGTAGACATCACACTATAACAAAATGTAAACTT 1144
Query 1107 CCCTTTTATTGAATCATTCTTCTGTTTAACATAAGAAACTGATA-AATTATAATATTGTC 1165
||||| ||||||| ||||||||||||| |||||||||||||| | ||||| || ||||||
Sbjct 1145 CCCTTCTATTGAAACATTCTTCTGTTTGACATAAGAAACTGA-ACAATTAGAACATTGTC 1203
Query 1166 TATTTA 1171
||||||
Sbjct 1204 TATTTA 1209
> AT3G06960.1 | Symbols: PDE320, TGD4 | pigment defective 320 |
chr3:2194208-2196547 REVERSE LENGTH=1654
Length=1654
Score = 145 bits (78), Expect = 1e-33
Identities = 93/100 (93%), Gaps = 2/100 (2%)
Strand=Plus/Minus
Query 1073 TGGTAGACATCACACTATAACAAAATGTAAACTTCCCTTTTATTGAATCATTCTTCTGTT 1132
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 1653 TGGTAGACATCACACTATAACAAAATGTAAACTTCCCTTCTATTGAAACATTCTTCTGTT 1594
Query 1133 TAACATAAGAAACTGATA-AATTATAATATTGTCTATTTA 1171
| |||||||||||||| | ||||| || ||||||||||||
Sbjct 1593 TGACATAAGAAACTGA-ACAATTAGAACATTGTCTATTTA 1555
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57479624025
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5