BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478019
Length=2476
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06980.1 | Symbols: | DEA(D/H)-box RNA helicase family prot... 3598 0.0
> AT3G06980.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:2201467-2204833 FORWARD LENGTH=2581
Length=2581
Score = 3598 bits (1948), Expect = 0.0
Identities = 2236/2372 (94%), Gaps = 31/2372 (1%)
Strand=Plus/Plus
Query 1 ATGTTGGCCAGAGCTCCACCACCGTCTTTTAACTTT-CCGGCGAGGAGT-A-A-TATCTG 56
|||||||| ||||||||||| || | |||||| ||| |||||||||| | | | ||||||
Sbjct 65 ATGTTGGCGAGAGCTCCACCGCCTTATTTTAA-TTTCCCGGCGAGGAATAATACTATCTG 123
Query 57 TAATCGGAGGGAGATTGTGC-GTCTATTTCGTAACGGCGGAAGCGGAGGAGTGGTAGC-- 113
|||||||| |||||||||| || | |||||||| | | ||||||||||||||||
Sbjct 124 TAATCGGAATGAGATTGTGCGGT-TGTTTCGTAA---C-G--GCGGAGGAGTGGTAGCTA 176
Query 114 CA-GAGCCGGTTTCGTTCGGCGGCCACTGGAAACTTCGAGTTCGTACGACGATTCCACCG 172
| |||| |||||| |||||| ||||||||||||||||| || ||||||||||||||||
Sbjct 177 GAGGAGCTGGTTTCACTCGGCGACCACTGGAAACTTCGAGCTCTTACGACGATTCCACCG 236
Query 173 ATGACGGATTCATTATCATCAGTTCGGTGGATAAGGAGAATGAGTTCTCTCCTCCGCCTA 232
||||||||||| ||||||||||| ||| |||||||||||||||||| |||||||||||
Sbjct 237 ATGACGGATTCGTTATCATCAGTGCGGCAGATAAGGAGAATGAGTTCGCTCCTCCGCCTT 296
Query 233 CTCCCGATTTACTCTCTTCGATTCCGTCAGAATCTACGAGAAGAAATGCTTCGCGGTCGA 292
|| |||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||
Sbjct 297 CTTCCGATTTACTCTCTTCGATTCCGTCAGAATCTGCGAGAAGAAATGGTTCGCGTTCGA 356
Query 293 GAGGAGTAACTGCAAGTTTTGGAAGGCTAAAGGCACAGAAAGTGAAAGCTCTTGTTGGAA 352
|||| | ||||| |||||||||||| ||||||| ||||||||||||||||||||||| |
Sbjct 357 GAGGTCTGACTGCGAGTTTTGGAAGGTTAAAGGCCCAGAAAGTGAAAGCTCTTGTTGGGA 416
Query 353 AGGTAACGCAGAAGAAGCAGCATATGAGTCACAATGAGGAAGAAGACGAGGATGACGCCT 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 AGGTAACGCAGAAGAAGCAGCATATGAGTCACAATGAGGAAGAAGACGAGGATGACGCCT 476
Query 413 CTGATGCAGAGGATTATCCTGCGGATGAAGGGTTTGGTTCATCATCAATTCTGGATTTGA 472
|||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 CTGATG-AGA--ATTATTCTGCGGATGAAGGGTTTGGTTCATCATCAATTCTGGATTTGA 533
Query 473 TGAGGAAGAAGCTGGCTATGAAGGCTATTCCTAGGGCAGGAAAATCTGCAGAGATAAAGG 532
|||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
Sbjct 534 TGAGGAAGAAGCTGGCTATGAAGGCTATTCCTAGATCAGGAAAATCTGCAGAGAGGAACG 593
Query 533 AGGTGAAAAGAGTTAGCAAAGTGCGGGAATCTAGAGAGTCAAGAAGAGATTTAAATAGAT 592
|||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 594 AGGTAAAAAGAGCTAGCAAAGTGCGGGAATCTAGAGAGTCAAGAAGAGATTTAGATAGAT 653
Query 593 TGGAAGGAGATTATGAAGATGTTGAGGAGGTTTCAAATCCTGACAGGTTTACTGATAATG 652
||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 654 TGGAAGGAGATGATGAAGATGTTGATGAGGTTTCAAATCCTGACAGGTTTACTGATAATC 713
Query 653 AGAGAGCAGGGTCGCGGAGTTCTTATTCAAAA---GGCTATGCTGCTAACTCCAGGGGTA 709
|||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||
Sbjct 714 AGAGAGCAGGGTCGCGGAGTTCATATTCAAAAGGTGGTTATGCTGCTAACTCCAGGGGTA 773
Query 710 AGGGCGGTAGGCTTTCGGTTGCAAGAGATTTAGATTCATTTGAAGGACATGATAGAGCTA 769
|||| | |||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 774 AGGGTGATAGGCTTTCGGTTGCAAGAGATTTAGATTCATTTGAGGGACATGGTAGAGCTA 833
Query 770 TTGATGAGGTTTCAAACCCTCGAAAGTTTAATGATAACGAGAGAGCAGGATCGCGGAGTT 829
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 834 TTGATGAGGTTTCAAACCCTCGAAAGTTTAATGATAACGAGAGAGCAGAATCAAGGAGTT 893
Query 830 CATATTCAAGAGACTCTTCTGCTAACTCCAGGGGTAGAGAAGATAGGCGTTTTGTTGCCA 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 CATATTCAAGAGACTCTTCTGCTAACTCCAGGGGTAGAGAAGATAGGCGTTTTGTTGCCA 953
Query 890 AAGAGTTAAATACATTTCAGGGACGTGATAAAGCTTATGATGAGGTTTATAATCCTCGAA 949
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 AAGAGTTAGATACATTTCAGGGACGTGATAAAGCTTATGATGAGGTTTATAATCCTCGAA 1013
Query 950 GATTCACTGATAATGAGAGAGGAGGATCACA--TTTATCATATTCAAAAGGCTCTGATAC 1007
| ||||||||||||||||||||| ||| | |||| |||||||||||||||||||
Sbjct 1014 GGTTCACTGATAATGAGAGAGGA--CTCAGAGGAGGATCACATTCAAAAGGCTCTGATAC 1071
Query 1008 TAACTC-CAGGGGTTGGGGCGATAGGCGTTCTGTTGTTTATGCTAGAGATATGGATGATT 1066
|||||| | |||||||||| ||||||||||||||||| ||| | ||||||||||||||||
Sbjct 1072 TAACTCTC-GGGGTTGGGGTGATAGGCGTTCTGTTGTATATACAAGAGATATGGATGATT 1130
Query 1067 GGAGAGAGAATAGGAATAAAACCAATGCTACTAGAGAGACTGGCTTTTTTAGCCGGAAAA 1126
|||||||| |||||||||||||| | |||||| |||||||||||||||||||||||||
Sbjct 1131 GGAGAGAG---AGGAATAAAACCAAGGATACTAGGGAGACTGGCTTTTTTAGCCGGAAAA 1187
Query 1127 CTTTTGCAGAAATTGGATGTAGTGAAGATATGATGAAGGCCTTAAAGGAACAGAATTTTG 1186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 CTTTTGCAGAAATTGGATGTAGTGAAGATATGATGAAGGCCTTAAAGGAACAGAATTTTG 1247
Query 1187 ACCGCCCGGCACATATTCAGGCTATGGCTTTTTCACCAGTTATTGATGGAAAGAGTTGTA 1246
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1248 ATCGCCCGGCACATATTCAGGCTATGGCTTTTTCACCAGTTATTGATGGAAAGAGTTGTA 1307
Query 1247 TCATAGCTGACCAAAGTGGATCAGGCAAGACACTGGCATATCTTGTCCCTGCTATTCAGC 1306
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1308 TCATAGCTGACCAAAGTGGATCAGGCAAGACACTGGCATATCTTGTCCCTGTTATTCAGC 1367
Query 1307 GTCTCAGAGAAGAAGAACTTCAAGGACAGAGCAACTCATCTTCTGGGTGTCCTCGTGTTA 1366
||||||| |||||||| ||||||||||| ||||| || ||| |||||||||||||||| |
Sbjct 1368 GTCTCAGGGAAGAAGAGCTTCAAGGACACAGCAAATCGTCTCCTGGGTGTCCTCGTGTCA 1427
Query 1367 TTGTTCTGGTACCGACAGCAGAGTTGGCTTCCCAGGTTCTTGCTAACTGTAGATCAATAT 1426
||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1428 TTGTTCTGGTACCAACTGCAGAGTTGGCTTCTCAGGTTCTTGCTAACTGTAGATCAATAT 1487
Query 1427 CAAAGTCTGGGGTCCCGTTCCGTTCCATGGTAGTGACGGGTGGCTTCAGACAACGAACCC 1486
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1488 CAAAGTCTGGGGTCCCGTTCCGTTCGATGGTAGTGACGGGTGGCTTCAGACAACGAACCC 1547
Query 1487 AGCTAGAAAATTTAGAGCAAGGTGTTGACGTTTTGATTGCAACACCTGGGCGTTTCATGT 1546
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 1548 AGCTAGAAAATTTAGAGCAAGGTGTTGACGTTTTGATTGCAACACCAGGGCGTTTCACGT 1607
Query 1547 ACCTAATGAACGAAGGAATATTGGGGTTGTCAAATTTAAGATGTGCCATCTTGGATGAGG 1606
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1608 ACCTAATGAACGAAGGAATTTTGGGGTTGTCAAATTTAAGATGTGCCATCTTGGATGAGG 1667
Query 1607 TAGATATACTCTTTGGCGATGATGAGTTTGAGGCAGCCCTGCAAAGTTTGATAAACTCTT 1666
| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 1668 TGGATATACTCTTTGGCGACGATGAGTTTGAGGCAGCCCTGCAAAATTTGATAAACTCTT 1727
Query 1667 CTCCTGTTACTGCACAGTATCTATTTGTTACAGCAACCTTGCCACTTGAGATATACAACA 1726
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1728 CTCCTGTTACTGCACAGTATCTATTTGTTACAGCAACCTTGCCACTTGAAATATACAACA 1787
Query 1727 AACTTGTTGAAGTTTTCCCTGATTGTGAAGTTGTAATGGGACCTCGAGTGCACCGTGTTA 1786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1788 AACTTGTTGAAGTTTTCCCTGATTGTGAAGTTGTAATGGGACCTCGAGTGCACCGTGTTA 1847
Query 1787 GTAATGCTCTCGAAGAGTTTCTTGTCGACTGTAGTGGAGATGATAATGCAGAGAAAACTC 1846
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1848 GTAATGCTCTCGAAGAGTTTCTTGTTGACTGTAGTGGAGATGATAATGCAGAGAAAACTC 1907
Query 1847 CTGAGACTGCTTTTCAGAACAAGAAAACTGCTCTCCTTCAGATTATCGAGGAAAACCCTG 1906
|||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1908 CTGAGACTGCATTTCAGAACAAGAAAACTGCTCTCCTTCAGATAATGGAGGAAAACCCTG 1967
Query 1907 TTTCCAAAACTATTATCTTCTGCAATAAGATTGAGACATGTAGGAAAGTTGAGAATATAT 1966
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1968 TTTCCAAAACTATTATCTTCTGCAATAAGATTGAGACATGTAGGAAAGTTGAGAACATAT 2027
Query 1967 TTAAGCGGGTTGATAGAAAGGAAAGACAATTGCACGTCCTACCTTTTCATGCTGCACTCT 2026
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2028 TTAAGCGGGTTGATAGAAAGGAAAGACAGTTGCACGTCCTACCTTTTCATGCTGCACTCT 2087
Query 2027 CACAAGAATCAAGGCTTACAAACATGCAAGAATTCACATCATCGCAGCCCGAAGAAAATT 2086
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2088 CACAAGAGTCAAGGCTTACAAACATGCAAGAATTCACATCATCTCAGCCCGAAGAAAATT 2147
Query 2087 CACTGTTTCTGGTTTGCACGGATAGAGCCTCCCGTGGGATAGATTTCTCTGGTGTTGATC 2146
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2148 CACTGTTTCTGGTTTGCACTGATAGAGCCTCCCGTGGGATAGATTTCTCTGGTGTTGATC 2207
Query 2147 ATGTGGTGCTCTTTGACTTCCCACGTGACCCGAGTGAATACGTGAGACGTGTTGGAAGAA 2206
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 2208 ATGTGGTGCTCTTTGACTTCCCACGTGACCCCAGTGAATACGTGAGACGTGTAGGAAGAA 2267
Query 2207 CAGCAAGAGGGGCTAGAGGAGAAGGAAAGGCTTTCATCTTTGTGGTGGGGAAACAAGTAG 2266
|||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 2268 CAGCAAGAGGGGCTAGGGGAAAAGGAAAGGCTTTCATCTTTGTGGTGGGGAAGCAAGTAG 2327
Query 2267 GGTTGGCACGGAGGATAATTGAGCGAAATCAGAAAGGTCACCCAGTTCATGATGTCCCAA 2326
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2328 GGTTGGCACGGAGGATAATTGAGCGAAATGAGAAAGGTCACCCAGTTCATGATGTCCCAA 2387
Query 2327 ACGCATACGAGTTCACAACCTAAGTAACACTT 2358
|||| ||||||||||||||||||||||| |||
Sbjct 2388 ACGCTTACGAGTTCACAACCTAAGTAACTCTT 2419
Score = 97.1 bits (52), Expect = 7e-19
Identities = 78/89 (88%), Gaps = 8/89 (9%)
Strand=Plus/Plus
Query 2390 TACGTAGAGAAGCCAAGTCCAAATTTT-ACCCCTAAGTCGATCTGTTGTAATGTTGTTAA 2448
||||||||||||||||||||||||||| ||| || ||| | ||||||||||||||||
Sbjct 2490 TACGTAGAGAAGCCAAGTCCAAATTTTGACCATTA-GTC--T--GTTGTAATGTTGTTAA 2544
Query 2449 TG-CTACATAACCTCCAAGCTCATGGAGT 2476
|| | || |||||||||||||||||||||
Sbjct 2545 TGAC-ACTTAACCTCCAAGCTCATGGAGT 2572
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 122858843407
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5