BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478021
Length=1685
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07010.1 | Symbols: | Pectin lyase-like superfamily protein... 2614 0.0
AT5G48900.1 | Symbols: | Pectin lyase-like superfamily protein... 1136 0.0
AT5G55720.1 | Symbols: | Pectin lyase-like superfamily protein... 111 2e-23
> AT3G07010.1 | Symbols: | Pectin lyase-like superfamily protein
| chr3:2212728-2216483 REVERSE LENGTH=1673
Length=1673
Score = 2614 bits (1415), Expect = 0.0
Identities = 1603/1691 (95%), Gaps = 24/1691 (1%)
Strand=Plus/Plus
Query 1 AAGATAATGGGAATGGTCACACAATCTTCTTCTTATATTAACAtctctctcccgtagcct 60
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 AAGATAATGGGAATGGTCACACAATCTTCTTCTTATATTAACTTCTCTCTCCCGTAGCC- 59
Query 61 tttcttctactcttcttctcctattcctcctt--tttctctttttttttCTTCGAGAAAA 118
|||||||||||||||||||| ||||||| ||| ||| ||||| || | |||||||||
Sbjct 60 TTTCTTCTACTCTTCTTCTCATATTCCT-CTTCCTTTTTCTTTCCTTAT-ATCGAGAAAA 117
Query 119 GCCTCTGCCTCAGATAGAGACAGCTAAACAGAACAGAGCAAGAAC-ACTACAGCCATAAC 177
|||||||||||| ||||||| | |||||||||||||||||||||| | ||||||||||||
Sbjct 118 GCCTCTGCCTCATATAGAGATAACTAAACAGAACAGAGCAAGAACTA-TACAGCCATAAC 176
Query 178 AATGGCTGTCACAAAACTTATTCTCTTTGCTTCTGCATTGCTTCTAACAACTCTCTTTAT 237
||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||
Sbjct 177 AATGGCTGTCACAAAACTTATTCTCTTTGCTTCTGCATTACTTCTAACAGCTCTATTTAT 236
Query 238 CGGCGTTAATTCATCCAGGTCCAATGAAACATGGCATGAACATGCAGTTGAGAACCCAGA 297
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 CGGCGTTAATGCATCCAGGTCCAATGAAACATGGCATGAACATGCAGTTGAGAACCCAGA 296
Query 298 CGAAGTAGCTGCCATGGTGGACATGAGCATTCGAAACAGCACAGAGCGGCGAAGATTAGG 357
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 297 TGAAGTCGCTGCCATGGTGGACATGAGCATTCGAAACAGCACAGAGCGGAGAAGATTAGG 356
Query 358 TTACTTCTCCTGCGCCACCGGCAATCCAATCGACGATTGCTGGCGTTGCGACCGCAAATG 417
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 357 TTACTTCTCCTGCGCCACCGGCAACCCAATCGACGATTGCTGGCGTTGCGACCGCAAATG 416
Query 418 GCAGCTCCGTCGCAAACGTTTAGCCGATTGCTCAATCGGATTTGGCCGCAACGCAATCGG 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 GCAGCTCCGTCGCAAACGTTTAGCCGATTGCTCAATCGGATTTGGCCGCAACGCAATCGG 476
Query 478 AGGCCGCGACGGTCGTTTCTACGTCGTAACCGACCCAGGAGACGACAATCCGGTTAATCC 537
|||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||
Sbjct 477 AGGCCGCGACGGTCGTTTCTACGTCGTAACCGACCCTGGAGACGACGATCCCGTTAATCC 536
Query 538 GACACCGGGAACACTCCGTCACGCCGTGATCCAGGACGAGCCACTCTGGATCATCTTCAA 597
| ||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct 537 CATACCGGGAACACTCCGTCACGCCGTGATTCAAGACGAACCACTCTGGATCATCTTCAA 596
Query 598 ACGCGACATGGTCATAACCTTGAAGCAAGAGCTGATCATGAACAGCTTCAAAACCATTGA 657
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 597 ACGCGACATGGTTATAACCTTGAAGCAAGAGCTGATCATGAACAGCTTCAAAACCATCGA 656
Query 658 TGGTCGTGGTGTCAATGTTCACATAGCTAATGGAGCTTGTCTCACGATTCAGTACGTTAC 717
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 657 TGGTCGTGGTGTCAATGTTCACATCGCTAATGGAGCTTGTCTCACGATTCAATACGTTAC 716
Query 718 GAACATTATTGTCCATGGGATTCATATTCATGACTGTGTA-CCTACGGGTAATGCTATGG 776
||||||||||||||||||||||||| | ||||||||| | ||||||||||| |||||||
Sbjct 717 GAACATTATTGTCCATGGGATTCATGTCCATGACTGTA-AGCCTACGGGTAACGCTATGG 775
Query 777 TTAGAAGCTCTCCGTCGCATTATGGGTTTAGATCGATGGCTGATGGTGACGCCATCTCGA 836
|||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 776 TTAGAAGCTCTCCGTCCCATTATGGGTTTAGATCAATGGCTGATGGTGACGCGATCTCGA 835
Query 837 TTTTTGGGTCGAGTCATATTTGGATTGATCACAATTCGCTTTCTAATTGTGCTGATGGGC 896
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 836 TTTTTGGATCGAGTCATATCTGGATTGATCACAATTCGCTTTCTAATTGTGCTGATGGAC 895
Query 897 TTGTTGACGCTGTTATGAGTTCCACCGCCATTACTGTCTCAAACAATTTCTTCACCCATC 956
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 896 TTGTTGACGCTGTTATGAGCTCCACCGCCATTACTGTCTCAAACAATTTCTTCACCCACC 955
Query 957 ACAATGAGGTTATGTTGTTGGGGCACAGTGACTCATACACAAGAGACAAGGTGATGCAAG 1016
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 956 ACAATGAGGTTATGTTGTTGGGGCATAGTGATTCATACACAAGAGACAAGGTGATGCAAG 1015
Query 1017 TCACAATTGCTTACAACCATTTTGGTGAAGGTTTAATCCAGAGAATGCCAAGGTGTAGGC 1076
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1016 TTACAATTGCTTACAACCATTTTGGTGAAGGTTTAATCCAGAGAATGCCAAGATGTAGGC 1075
Query 1077 ATGGATATTTCCATGTAGTTAACAATGACTACACGCATTGGGAAATGTATGCAATTGGTG 1136
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1076 ATGGATATTTCCATGTAGTTAACAATGACTACACTCATTGGGAAATGTATGCAATTGGTG 1135
Query 1137 GTAGTGCTAGTCCCACCATCAACAGTCAGGGCAATCGATTTCTTGCCCCAA-CAAACCCA 1195
|||||||| |||| |||||||||||||||||||||||||||||||| ||| ||| ||||
Sbjct 1136 GTAGTGCTGGTCCAACCATCAACAGTCAGGGCAATCGATTTCTTGCTCCAGTCAA-CCCA 1194
Query 1196 TTTGCTAAGGAGGTGACTAAGAGAGAGTACACAGGAGAATCGAAATGGAAGCACTGGAAT 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 TTTGCTAAGGAGGTGACTAAGAGAGAGTACACAGGAGAATCGAAATGGAAGCACTGGAAT 1254
Query 1256 TGGAGATCAGAAGGAGATCTTTTCTTAAACGGAGCATTTTTCACACGTTCTGGAGCTGGA 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 TGGAGATCAGAAGGAGATCTTTTCTTAAACGGAGCATTTTTCACACGTTCTGGAGCTGGA 1314
Query 1316 GCTGGATCCAACTATGCCAGAGCTTCGAGTTTATCAGCCAAATCATCCTCACTCGTTGGC 1375
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1315 GCTGGAGCCAACTATGCCAGAGCTTCGAGTTTATCAGCCAAATCATCCTCACTCGTCGGC 1374
Query 1376 ACCATGACCTCTTACTCAGGTGCTCTTAACTGCAGAGCTGGTCGTCGATGTTAATTGATC 1435
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1375 ACCATGACCTCTTACTCAGGTGCTCTTAACTGCAGAGCCGGTCGTCGATGTTAATTGATC 1434
Query 1436 AAGAATCAGGAAGAAAACaaaaaaaaaaaaCCtttttttGGTTGTGCAGTAGTCGACAAG 1495
||||||||| ||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 1435 AAGAATCAG-AAGAAAA-AAAA--------CCTTTTTTTGGTTGTGCAGTAGTCGACAAG 1484
Query 1496 TTTACCCATATCAGGCCCTCTGtttttttcctt-ttcactttttttttttttttttCACT 1554
||||||| ||||||||||| ||| |||| | || ||||||||||||||||| ||||||||
Sbjct 1485 TTTACCCGTATCAGGCCCTATGTCTTTT-C-TTCTTCACTTTTTTTTTTTTGTTTTCACT 1542
Query 1555 CTTGGGGTCTCTTGCGATATATGCTTCCTATTGGATGTGGAAGCCTAATTTAAACGGCTT 1614
|||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||
Sbjct 1543 CTTGGGGTCTCTTGCGATATATGCTTCCTAGTGGATGCGGAGGCCTAATTTAAACGGCTT 1602
Query 1615 CAACTGTAATATAAAGTTGTATGATTAATTCTTTTCACGTCCATTGATATAAAGTTGTTT 1674
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1603 CAACTGTAATATAAAGTTGTATGATTAATTCTTTTCACCTCTATTGATATAAAGTTGTTT 1662
Query 1675 CATGAGTCGTT 1685
||| |||||||
Sbjct 1663 CATTAGTCGTT 1673
> AT5G48900.1 | Symbols: | Pectin lyase-like superfamily protein
| chr5:19825137-19829092 FORWARD LENGTH=1540
Length=1540
Score = 1136 bits (615), Expect = 0.0
Identities = 1063/1277 (83%), Gaps = 39/1277 (3%)
Strand=Plus/Plus
Query 175 AACAATGGCTG-T-CACAAA-ACTTATTC-TCTTTGCTTCTGCATTGCTTCTAACAACT- 229
||||||||||| | |||||| |||| || |||||||||||||||| || ||| ||| |
Sbjct 100 AACAATGGCTGTTACACAAATACTT-GTCGTCTTTGCTTCTGCATTACTCCTATCAA-TG 157
Query 230 CTCTTTATC-GGCGTTAATT-CATCCAGGTCCAATGAAACATGGCATGAACATGCAGTTG 287
|||| | | ||||| ||| || | ||||| ||||||||||||||||||||||||||||
Sbjct 158 TTCTTCA-CTGGCGTCGATTCCA-CAAGGTCTAATGAAACATGGCATGAACATGCAGTTG 215
Query 288 AGAACCCAGACGAAGTAGCTGCCATGGTGGACATGAGCATTCGAAACAGCACAGAGCGGC 347
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 216 AGAATCCAGAGGAAGTAGCTGCCATGGTGGACATGAGCATTCGAAACAGCACAGCGAGAA 275
Query 348 GAAGATTAGGTTACTTCTCCTGCGCCACCGGCAATCCAATCGACGATTGCTGGCGTTGCG 407
|||||||||| |||||||| ||| | ||||| ||||||||||| ||||| |||||||| |
Sbjct 276 GAAGATTAGGATACTTCTCATGCTCAACCGGAAATCCAATCGATGATTGTTGGCGTTGTG 335
Query 408 ACCGCAAATGGCAGCTCC-GTCGCAAACGTTTAGCCGATTGCTCAATCGGATTTGGCCGC 466
|||| | |||||| ||| | || |||| | ||||| ||||| ||||||| || || |||
Sbjct 336 ACCGGAGATGGCAA-TCCCGGCGAAAACATCTAGCCAATTGCGCAATCGGGTTCGGTCGC 394
Query 467 AACGCAATCGGAGGCCGCGACGGTCGTTTCTACGTCGTAACCGACCCAGGA-GACGACAA 525
|| |||||||| || | |||||||||| |||||| || | || ||| | ||||| ||
Sbjct 395 AATGCAATCGGCGGTAGAGACGGTCGTTACTACGTAGTGAGTGATCCAA-ACGACGATAA 453
Query 526 TCCGGTTAATCCGACACCGGGAACACTCCGTCACGCCGTGATCCAGGACGAGCCACTCTG 585
|||||||| || | |||||||||| | |||||||| || || || || || ||| | ||
Sbjct 454 CCCGGTTAACCCTAAACCGGGAACATTACGTCACGCAGTAATTCAAGAAGAACCATTATG 513
Query 586 GATCATCTTCAAACGCGACATGGTCATAACCTTGAA-GCAAGAGCTGATCATGAACAGCT 644
|||| |||| ||||| |||||||||||||| || || | |||| || ||||||||||| |
Sbjct 514 GATCGTCTTTAAACGTGACATGGTCATAACATTAAAAG-AAGAACTAATCATGAACAGTT 572
Query 645 TCAAAACCATTGATGGTCGTGGTGTCAATGTTCACATAGCTAATGGAGCTTGTC-TCACG 703
||||||| || ||||||||||| ||||| ||||||||||||||||| || || | |||||
Sbjct 573 TCAAAACAATCGATGGTCGTGGCGTCAACGTTCACATAGCTAATGGTGCATG-CATCACG 631
Query 704 ATTCAGTACGTTACGAACATTATTGTCCATGGGATTCATATTCATGACTGT-GTACCTAC 762
||||||| ||| || |||||||| | |||||||| ||||||||||| ||| | ||| ||
Sbjct 632 ATTCAGTTCGTGACTAACATTATCATTCATGGGATACATATTCATGATTGTAG-ACCAAC 690
Query 763 GGGTAATGCTATGGTTAGAAGCTCTCCGTCGCATTATGGGTTT-AGATCGATGGCTGATG 821
||||| |||||||||||||||||||| ||||||||||| || ||| | ||||||||||
Sbjct 691 TGGTAACGCTATGGTTAGAAGCTCTCCTTCGCATTATGG-TTGGAGAACTATGGCTGATG 749
Query 822 GTGACGCCATCTCGATTTTTGGGTCGAGTCATATTTGGATTGATCACAATTCGCTTTCTA 881
| || | || |||||||| |||||||||||||||||||||||||| ||||||||||| |
Sbjct 750 GAGATGGGATTTCGATTTTCGGGTCGAGTCATATTTGGATTGATCATAATTCGCTTTCGA 809
Query 882 ATTGTGCTGATGGGCTTGTTGACGCTGTTATGAG-TTCCACCGCCATTACTGTCTCAAAC 940
||||||||||||||||| |||| ||||||||| | ||| || || |||||| |||| ||
Sbjct 810 ATTGTGCTGATGGGCTTATTGATGCTGTTATG-GCTTCTACTGCTATTACTATCTCCAAT 868
Query 941 AATTTCTTCACCCATCACAATGAGGTTATGTTGTTGGGGCACAGTGACT-CATACACAAG 999
|||| |||||| || ||||||||||||||||| ||||| || ||||| | | || |||||
Sbjct 869 AATTACTTCACACACCACAATGAGGTTATGTTATTGGGACATAGTGA-TACCTATACAAG 927
Query 1000 AGACAAGGTGATGCAAGTCACAATTGCTTACAACCATTTTGGTGAAGGT-TTAATCCAGA 1058
|| ||||| |||||||| ||||| ||||| || ||||||||||||||| ||| || |||
Sbjct 928 GGATAAGGTTATGCAAGTTACAATAGCTTATAATCATTTTGGTGAAGGTCTTATTC-AGA 986
Query 1059 GAATGCCAAGGTGTAGGCATGGATATTTCCATGTAGTTAACAATGACTACACGCATTGGG 1118
||||||| |||||||||||||||||||| |||||||||||||||||||| || |||||||
Sbjct 987 GAATGCCGAGGTGTAGGCATGGATATTTTCATGTAGTTAACAATGACTATACACATTGGG 1046
Query 1119 AAATGTATGCAATTGGTGGTAGTGCTAGTCCCACCATCAACAGTCAGGGCAATCGATTTC 1178
|||||||||| || ||||| ||||| ||||| ||||| ||||| || || ||| ||| ||
Sbjct 1047 AAATGTATGCGATCGGTGGCAGTGCGAGTCCTACCATTAACAGCCAAGGAAATAGATATC 1106
Query 1179 TTGCCCCAACAAACCCATTTGCTAAGGAGGTGACTAAGAGAGAGTACACAGGAG-AATCG 1237
| ||||||| ||||| |||||||| |||||||| |||||||| || |||| | ||| |
Sbjct 1107 TCGCCCCAAGAAACCGGTTTGCTAAAGAGGTGACAAAGAGAGACTATGCAGG-GCAATGG 1165
Query 1238 AAATGGAAGCACTGGAATTGGAGATCAGAAGGAGATCTTTTCTTAAACGGAGCATTT-TT 1296
|||||| ||| ||||||||||||||||||||||||||||| ||||||||||| ||| ||
Sbjct 1166 CAATGGAGGCATTGGAATTGGAGATCAGAAGGAGATCTTTTTTTAAACGGAGC-TTTCTT 1224
Query 1297 CACACGTTCTGGAGCTGGAGCT-GGATCCAACTATGCCAGAGCTTCGAGTTTATCAGCCA 1355
||||||||||||| | || || ||| | | ||| || |||||||| |||||| ||||||
Sbjct 1225 CACACGTTCTGGATCAGGT-CTTGGAGCTAGCTACGCTAGAGCTTCAAGTTTAGCAGCCA 1283
Query 1356 AATCATCCTCACTCGTTGGCACCATGACCT-CT-TACTCAGGTGCTCTTAACTGCAGAGC 1413
||||||| || || |||||| ||| |||| | | | | ||||||||||| |||||||
Sbjct 1284 AATCATCATCTCTTGTTGGCGTCATTACCTACAATGC-C-GGTGCTCTTAATTGCAGAGG 1341
Query 1414 TGGTCGTCGATGTTAAT 1430
|||||| || |||||||
Sbjct 1342 TGGTCGCCGGTGTTAAT 1358
> AT5G55720.1 | Symbols: | Pectin lyase-like superfamily protein
| chr5:22556047-22557725 FORWARD LENGTH=1408
Length=1408
Score = 111 bits (60), Expect = 2e-23
Identities = 195/256 (76%), Gaps = 25/256 (10%)
Strand=Plus/Plus
Query 1031 AACCATTTTGGTGAAGG-TTTAATCCAGAGAATGCCAAGGTGTAGGCATGGATATTT-C- 1087
||| ||||||||||||| || |||| ||||||||||||||||||||||||||||| |
Sbjct 778 AACTATTTTGGTGAAGGACTT-GTCCAAAGAATGCCAAGGTGTAGGCATGGATATTTTCA 836
Query 1088 CAT-GT-AGTTAACAATGACTACACGCATTGGGAA-ATGTATGCAATTGGTGGTAGTGCT 1144
||| || | | |||| | | || | | | ||| || |||||||| |||||||| ||||||
Sbjct 837 CATAGTGAAT-AACATTTA-TAGA-G-ACTGG-AAGATGTATGCTATTGGTGGAAGTGCT 891
Query 1145 AGTCCCACCATCAACAGTCAGGGCAATCGATTTCTT-GCC-CCAACAAACCCATTTG-CT 1201
| ||| || ||| || || || ||| | |||| | || |||| || | | || |
Sbjct 892 AATCCAACGATCTTTAGCCAAGGAAAT-GTTTTCATAGCTTCCAATAATC--AGTTCACC 948
Query 1202 AAGGAGGTGACTAAG--AGAGAGTACACA-GGAGAATCGAA-A-TGGAAGCACTGGAATT 1256
|||||||| || ||| ||||||| || | ||||| |||| | |||||| | ||||| |
Sbjct 949 AAGGAGGTTACAAAGCGAGAGAGTGCAGATGGAGA--CGAAGAATGGAAGGAATGGAACT 1006
Query 1257 GGAGATCAGAAGGAGA 1272
||| ||||||||||||
Sbjct 1007 GGAAATCAGAAGGAGA 1022
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83282704155
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5