BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478024
Length=1833
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07050.1 | Symbols: | GTP-binding family protein | chr3:222... 2976 0.0
> AT3G07050.1 | Symbols: | GTP-binding family protein | chr3:2229590-2232361
REVERSE LENGTH=1843
Length=1843
Score = 2976 bits (1611), Expect = 0.0
Identities = 1767/1841 (96%), Gaps = 15/1841 (1%)
Strand=Plus/Plus
Query 1 CCATCTTCCTTCTCCATAAACCC-TTTCTTCTAACCTACTCAGTTTTTCTTTTTGCGTCG 59
||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||
Sbjct 1 CCATCTTCCTTCTCCATAAACCCTTTTCTTTTAACCTACTCAGTTTTTCTGTTTGCGTCG 60
Query 60 CTCTCTTCCGCA-GGCGAGAAAGATGGTGAAACGGAGTAAAAAGAGTAAGAGTAAGAGGG 118
||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTCTCATCC-CAGGGCGAGAAAGATGGTGAAACGGAGTAAAAAGAGTAAGAGTAAGAGGG 119
Query 119 TGACCTTGAAGCAGAAGCATAAGGTCCTGAGAAAGGTGAAGGAGCACCACAAGAAGAAGG 178
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 120 TGACCTTGAAGCAGAAGCATAAGGTCCTGAAAAAGGTGAAGGAGCACCACAAGAAGAAGG 179
Query 179 CAAAGGATGCTAAAAAGCTTGGGCTCCACCGTAAGCCAAGAGTAGAGAAGGACCCAGGTA 238
|||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||
Sbjct 180 CAAAGGATGCTAAAAAGCTTGGCCTTCACCGTAAGCCAAGAGTAGAGAAAGACCCAGGTA 239
Query 239 TCCCCAATGACTGGCCTTTCAAGGAACAAGAGCTTAAGGCCCTTGAAGTTAGACGTGCCC 298
| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 240 TACCCAATGACTGGCCTTTCAAGGAACAAGAGCTTAAAGCCCTTGAAGTTCGACGTGCCC 299
Query 299 GTGCTCTCGAAGAGATTGAACAGAAGAAAGAAGCCCGCAAAGAAAGGGCTAAAAAGAGGA 358
||||||| || ||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 300 GTGCTCTTGAGGAGATTGAACAGAAGAAAGAAGCTCGCAAAGAAAGGGCCAAAAAGAGGA 359
Query 359 AACTTGGTTTGGTTGATGATGATGATACCAAGACAGAAGAAGAGACCATAGAGGAGTTCA 418
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||| || |
Sbjct 360 AACTTGGTTTGGTTGATGATGAGGATACCAAGACAGAAGGAGAGACCATAGAGGACTT-A 418
Query 419 -CTAAAGTTGTCAATGTTCGAGATAACTCGGAGAGGGCTTTCTACAAGGAGCTAGTTAAA 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CCTAAAGTTGTCAATGTTCGAGATAACTCGGAGAGGGCTTTCTACAAGGAGCTAGTTAAA 478
Query 478 GTTATTGAATTGTCTGATGTCATTTTGGAGGTTCTTGATGCCCGTGATCCTCTTGGCACT 537
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GTCATTGAATTGTCTGATGTCATTTTGGAGGTTCTTGATGCCCGTGATCCTCTTGGCACT 538
Query 538 CGTTGTACCGACATGGAGAGGATGGTAATGCAAGCCGGTCCCAATAAGCATCTTGTGTTG 597
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 539 CGTTGTACTGACATGGAGAGGATGGTGATGCAAGCCGGTCCCAATAAGCATCTTGTGTTG 598
Query 598 CTGCTGAACAAGATTGATCTTGTTCCCCGAGAGGCTGCTGAGAAATGGCTTAAGTACCTT 657
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 599 CTGCTGAACAAGATTGATCTTGTTCCCCGAGAGGCTGCTGAGAAATGGCTTATGTACCTT 658
Query 658 AGGGAAGAATTTCCAGCTGTTGCATTCAAGTGTAGCACCCAGGAACAGAGATCAAACTTG 717
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 659 AGGGAAGAATTTCCAGCTGTTGCCTTCAAGTGTAGCACCCAGGAACAGAGATCAAACTTG 718
Query 718 GGTTGGAAATCATCTAAGGCATCAAAACCAAGCAATATGTTGCAGACGAGTGATTGTCTT 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GGTTGGAAATCATCTAAGGCATCAAAACCAAGCAATATGTTGCAGACGAGTGATTGTCTT 778
Query 778 GGAGCAGACACTCTTATCAAATTGTTGAAAAACTACTCAAGAAGTCATGAGTTaaaaaaa 837
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 779 GGAGCAGACACTCTTATCAAATTGTTGAAGAACTACTCAAGAAGTCATGAGTTAAAAAAA 838
Query 838 TCTATTACAGTTGGTATTATTGGACTGCCTAATGTCGGCAAGAGTAGTCTTATTAACAGT 897
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TCTATCACAGTTGGTATTATTGGACTGCCTAATGTCGGCAAGAGTAGTCTTATTAACAGT 898
Query 898 TTGAAGAGAGCGCATGTTGTCAATGTCGGTGCCACTCCTGGACTTACAAGGTCTCTGCAA 957
||||||||||||||||||||||||| ||||||||||||||||| || || |||||||||
Sbjct 899 CTGAAGAGAGCGCATGTTGTCAATGTTGGTGCCACTCCTGGACTGACTAGATCTCTGCAA 958
Query 958 GAGGTTCATTTAGACAAAAACGTGAAGTTGCTGGATTGTCCTGGAGTTGTGATGCTGAAA 1017
|||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 959 GAGGTTCACTTGGACAAAAACGTGAAGTTGCTGGATTGTCCTGGAGTTGTGATGTTGAAA 1018
Query 1018 TCATCAGGAAATGATGCTTCTATAGCTCTCCGAAATTGTAAAAGAATTGAGAAGTTGGAT 1077
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1019 TCATCAGGAAATGATGCTTCCATAGCTCTCCGAAATTGTAAAAGAATCGAGAAGTTGGAT 1078
Query 1078 GACCCAGTCAGTCCAGTGAAGGAAATTCTCAAGCTTTGTCC-AACACAAATGCTGGTGAC 1136
|||||||| |||||||||||||||||||||||||||||||| || | | |||||||||||
Sbjct 1079 GACCCAGTTAGTCCAGTGAAGGAAATTCTCAAGCTTTGTCCTAA-AGATATGCTGGTGAC 1137
Query 1137 TCTCTACAAAATCCCGAGCTTCGAGGCAGTTGATGATTTTCTTTACAAAGTCGCCACTGT 1196
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1138 TCTCTACAAAATCCCGAGCTTCGAGGCAGTTGATGATTTCCTTTACAAAGTCGCCACTGT 1197
Query 1197 AAGGGGTAAGCTTAAAAAGGGTGGTCTTGTGGATATTGAAGCTGCTGCCAGAATTGTTTT 1256
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1198 AAGGGGTAAACTTAAAAAGGGTGGTCTTGTGGATATTGATGCTGCTGCCAGAATTGTTTT 1257
Query 1257 GCATGACTGGAATGAAGGTAAAATCCCATACTATACAATGCCGCCAAAGAGGGACCAAGG 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1258 GCATGACTGGAATGAAGGTAAAATCCCATACTATACAATGCCGCCAAAGAGGGACCAGGG 1317
Query 1317 TGGACATGCAGAGTCAAAGATTGTGACCGAGCTGGCCAAGGATTTCAATATCGATGAGGT 1376
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1318 TGGACATGCAGAGTCAAAGATTGTGACTGAGCTGGCCAAGGATTTCAACATCGATGAGGT 1377
Query 1377 TTACAGTGGTGAATCCTCTTTCATTGGGAGCTTGAAGACGGTAAACGAATTCAACCCTGT 1436
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1378 TTACAGTGGTGAATCCTCTTTCATTGGGAGCTTGAAGACGGTTAACGAATTCAACCCTGT 1437
Query 1437 TGA--AGTTCCTTCAAATGGTCCTCTCAATTTCGATGAAACTATGATCGAGGATGAGTCT 1494
| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 T-ATTA-TTCCTTCAAATGGTCCTCTCAATTTCGATGAAACTATGATCGAGGATGAGTCT 1495
Query 1495 AAGACTG-AGACAGAAGAAGAGCCTGAGCATGACAGTGATGATGATGAGTCTATGGGAGG 1553
||||| | |||| ||||| ||| |||||||||| ||||||||||||||||| ||||||||
Sbjct 1496 AAGAC-GCAGACGGAAGAGGAGGCTGAGCATGAGAGTGATGATGATGAGTCAATGGGAGG 1554
Query 1554 GGACGAGGAGGAAGAGGCAGGAAAGGCGAAGGAGAAATCAGAGACGGGGAGGCAGAACGT 1613
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1555 GGAGGAGGAGGAAGAGGCAGGAAAGACGAAGGAGAAATCAGAGACGGGGAGGCAGAACGT 1614
Query 1614 GAAGCTATATGCAGCGGAAAACATGTTGAATACaaa-aaagcagaaagcagagaagaaga 1672
||||||||| |||||||||| ||||||||||||||| ||| |||||||||||||||||||
Sbjct 1615 GAAGCTATACGCAGCGGAAAGCATGTTGAATACAAAGAAA-CAGAAAGCAGAGAAGAAGA 1673
Query 1673 agaggaagaaagcaaagaaagcaGGAGGTGGTGAGGAGGATCTGATGGACGGAGATTATG 1732
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1674 AGAGGAAGAAAGCAAAGAAAGCAGGAGCTGATGAGGAGGATCTGATGGACGGAGATTATG 1733
Query 1733 ATTTCAAAGTGGACTATAGGAAGAAGAAAGATGGAGAAGACGAAGAATTCCAGATTGAGG 1792
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1734 ATTTCAAAGTGGATTATAGGAAGAACAAAGATGGAGAAGACGAAGAATTCCAGATTGATG 1793
Query 1793 CTAAAATTCCAATGGCTGGACTTTTGCCTGAAGAATGAGTG 1833
||||||| |||||||||||||||||||||||||||||||||
Sbjct 1794 CTAAAATCCCAATGGCTGGACTTTTGCCTGAAGAATGAGTG 1834
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90712384815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5