BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478027
Length=1803
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07080.1 | Symbols: | EamA-like transporter family | chr3:2... 2627 0.0
AT3G07090.1 | Symbols: | PPPDE putative thiol peptidase family... 145 2e-33
> AT3G07080.1 | Symbols: | EamA-like transporter family | chr3:2241036-2243124
FORWARD LENGTH=1831
Length=1831
Score = 2627 bits (1422), Expect = 0.0
Identities = 1700/1829 (93%), Gaps = 39/1829 (2%)
Strand=Plus/Plus
Query 1 GCTGTTTATCTGAATTCGCTACCtttttttGTTTTCTCTTTGGTAAATAAATATCTGATT 60
|||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||
Sbjct 1 GCTGTTTATCTGAATTCGATACC--TTTTTGTTTTTTCTTTGGTAAATAAATATCTGATT 58
Query 61 TCGCTTTTGAATCGACATTGATTGAACAGTCTGACGCCGCTCTCA-ATTTCTGTAGCTGT 119
|||||||||||||| ||||| ||||||| | |||||||| ||| | |||||||| |||||
Sbjct 59 TCGCTTTTGAATCGCCATTGGTTGAACAATTTGACGCCGATCT-AGATTTCTGTCGCTGT 117
Query 120 GAAGGCAGTGTCCTGTTTTTCTCGATCATTTGGTTTGGTGAGATC-TTTCTCGTTTACGC 178
||||| ||||||||||||||| |||||| |||||||| | |||| ||||||||||||||
Sbjct 118 GAAGGTAGTGTCCTGTTTTTC-CGATCAATTGGTTTGTTCCGATCGTTTCTCGTTTACGC 176
Query 179 TTTTTGTTCTCCTTGGGAAATTTTTCGTTGCAAGAGAGATCTTTGATTCATGGGTATTGA 238
|||||||| |||||| |||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 177 TTTTTGTTATCCTTGAGAAATTTTACGTTGCAAGAGAGATCTTTGATTCATGGGTGTTGA 236
Query 239 AGCATCCGAGGTAAAACGTATCATTGATCTTAATCAGTGAGATCGGTGAGCTCAAGTTCT 298
||||| || | ||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 237 AGCATTCGTGTTAAAATGTATGATTGATCTTAATCAGTGAGATCGGTGAGCTCAAGTTCT 296
Query 299 GAT-TTTTCTTATTGGA-ATTTCGAAGAGATATGTCAACAAAGTTATGGAGATGGGTATT 356
| | |||| | ||| || | ||||||||| ||||||||||||||||||||||||||| ||
Sbjct 297 G-TGTTTTGTAATT-GAGA-TTCGAAGAGGTATGTCAACAAAGTTATGGAGATGGGTGTT 353
Query 357 AGGGTTGATGTACCTATTTGCCGTTGCCACGATTTGGATTGCAGCGAGTTTTGTAGTCCA 416
|||| |||| |||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 354 AGGGCTGATATACCTATTTGCCGTTGCCACGATTTGGATTGCGGCTAGTTTTGTAGTCCA 413
Query 417 GTCTGTGGTGGAAGCTGGTGTTTCTCCGTTCTTGATCACTTTCATCTGTAATTCATTGTT 476
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 414 GTCTGTGGTGGAAGCTGGTGTTTCTCCGTTCTTGATCACTTTCATTTGTAATTCATTGTT 473
Query 477 CGTTGTTTATCTTCCCCTTTTTGAGATTGGTCGATATCTCGAAGATGCATATGGGAGTTT 536
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 474 CGTTGTTTATCTTCCCCTTTTTGAGATTGGTCGATATCTGGAAGATGCATATGGGAGTTT 533
Query 537 ATTGTTTTGGAGAAGCAAAAGGTCGCATTTAATGGAATTGGTTGAATCAGAGAAGGCTGT 596
|||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 534 ATTGTTCTGGAGAAGCAAAAGGTCGCATTTAATGGAACTGGTCGAATCAGAGAAGGCTGT 593
Query 597 TTTGCTTGGACAAGATGTTTCAGGTGTTAAATCAGATGCTACTGAGAGTTCTTCAGGGCT 656
|||||||||| |||||||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 594 TTTGCTTGGAAAAGATGTTTCTGGTGTGAAATCAGATGCTACTGAGAG---TTCAGGGCT 650
Query 657 TGTTGTGAGAGAGGAAGAGATTAGTGAGGGTGGTAATGGAATTGAATCTGGATTAGAAAA 716
||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 651 TGTTGTGAGAGAGCAAGAGATTAGTGAGGGTGGTAATGGGATTGAATCTGGATTGGAAAA 710
Query 717 TATAGAGCTTGAGATTAATGGTAGTGTCAATGTTAGTGATGGAGCCAGTGGAATTTCTAA 776
|||||||||||||||| ||| |||||||||||||||||||||||| |||||| |||||||
Sbjct 711 TATAGAGCTTGAGATTGATGCTAGTGTCAATGTTAGTGATGGAGCTAGTGGAGTTTCTAA 770
Query 777 TAAAGGGTTAGATGAGAAGGGACGTTGGACACGGATGCGAGTTGCTAAAGTTAGCCTTGT 836
|||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 771 TAAAGGATTAGATGAGAAGGGTCGTTGGACAAGGATGCGAGTTGCTAAAGTTAGCCTTGT 830
Query 837 TATATGTCCGTTTTGGTTTTTGGCACAGCTTACTTTTAATGTCTCTCTCAAGTACACGAC 896
|| |||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||
Sbjct 831 GATTTGTCCGTTTTGGTTTTTGGCGCAGCTTACATTTAATGTCTCTCTCAAGTACACAAC 890
Query 897 TGTTACGTCAAATACCATCTTAAGCAGTGCATCAAGCCTTTTCACCTTTCTTGTTTCACT 956
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 891 AGTTACGTCAAATACCATATTAAGCAGTGCATCAAGCCTTTTCACCTTTCTTGTTTCACT 950
Query 957 AATATTCTTGGGTGAGAAGTTCACGTGGTTGAAACTCTTCAGTGTTCTTCTTTGTATGTC 1016
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 951 AATATTCTTGGGTGAGAAGTTCACATGGTTGAAACTCTTCAGCGTTCTTCTTTGTATGTC 1010
Query 1017 TGGGACTATCATTGTAAGTATGGGTGACACAGAGTCCAACTCAAATGCAGTAGCTAAAAA 1076
||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||| ||
Sbjct 1011 TGGGACTATAATTGTAAGTATGGGTGACTCAGAGTCCAAGTCAAATGCAGTAGCTAAGAA 1070
Query 1077 CCCTCTTTTGGGAGATATTCTTTCACTGGTCTCAGCTGCGCTATATGCTGTCTACATCAC 1136
|||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct 1071 CCCTCTTTTGGGAGATATTCTTTCGCTGGTCTCAGCGGCGCTGTATGCTGTCTACATCAC 1130
Query 1137 TCTTATACGCAAAAAGCTTCCAGATGATGATGAAAGAAACGGTCGTGTCAGTATGGCTCA 1196
||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||
Sbjct 1131 TCTTATACGCAAAAAGCTTCCGGATGATGATGAAAGAAACGGCCGGGTCAGTATGGCTCA 1190
Query 1197 GTTCCTGGGGTTTCTTGGTCTCTTCAATTTCTTCATTTTCCTTCCTCCTGCTCTAATTCT 1256
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1191 GTTCCTCGGGTTTCTTGGTCTCTTCAATTTCTTCATTTTCCTTCCTCCTGCTCTAATACT 1250
Query 1257 CAACTTCACAAAGCGAGAACGCTTCAACACACTAACCTTGAAACAATTTGGTCTAGTTGT 1316
|||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||
Sbjct 1251 CAACTTCACAAAGCGAGAACGCTTCAACGCACTTACCTTGAAACAATTTGGCCTAGTTGT 1310
Query 1317 TGGCAAAGGTTTGTTAGATAATGTGCTTAGTGACTATCTGTGGGCAAAGGCAGTCCTATT 1376
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1311 TGGCAAAGGTTTGTTAGATAATGTGCTTAGTGACTATCTGTGGGCAAAGGCAGTACTATT 1370
Query 1377 GACAACAACCACTGTAGCTACGGCTGGGCTAACCATTCAGGTTCCACTGGCAGCCATTGT 1436
||||||||||||||||||||| ||||||||||| |||||||| ||| |||||||||||||
Sbjct 1371 GACAACAACCACTGTAGCTACAGCTGGGCTAACTATTCAGGTCCCATTGGCAGCCATTGT 1430
Query 1437 AGACAGCTTATCAGGGAACAAACCAAGCTTCACCGACTACATTGGTGCTGCAGCTGTTAT 1496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1431 AGACAGCTTATCAGGGAACAAACCAAGCTTCACCGACTACATTGGTGCTGCAGCTGTTAT 1490
Query 1497 GGTTGGCTTTGCAGGGATCAATATTCCCTCAGAGATGTTTTGCAGATCCAAAGAGACCGC 1556
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||
Sbjct 1491 GGTTGGCTTTGCAGGGATTAATATTCCCTCAGAGATGTTTTGCAAATCCAAAGAGACTGC 1550
Query 1557 TATTGAGTTAGAACCTGGGACTTCGTTCACAGATCCTCCTCCGATTGTGCCAGATAGCAT 1616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1551 TATTGAGTTAGAACCTGGGACTTCGTTCACAGATCCTCCTCCGATTGTGCCAGATAGCAT 1610
Query 1617 AAGAGTAGATTCTTCATTGACTGTAGTATAATCCTAA-TTGTTCACAA-TTCAAAAGCCA 1674
|||||||||||||||| |||||||||||||| ||||| |||||| ||| |||||||||||
Sbjct 1611 AAGAGTAGATTCTTCACTGACTGTAGTATAAGCCTAAATTGTTC-CAAATTCAAAAGCCA 1669
Query 1675 TAAtt-tt-t-----cttttgtt---ctctt-----ct-ct-ttt-cctcttctGTGAT- 1715
|||| || | ||||| || ||||| || || ||| |||||| | ||||
Sbjct 1670 CAATTCTTGTAAAATCTTTTTTTTTTCTCTTGTTTACTGCTCTTTTCCTCTTTTATGATA 1729
Query 1716 -T-AATTTGTAGATCGTCGAACATAATATATCGAAATATAGCTGAAGGCAATAGTGTAAT 1773
| |||||||||||||| |||||||||| | ||||||| |||||||||||||||||||||
Sbjct 1730 ATTAATTTGTAGATCGTTGAACATAATACA-CGAAATACAGCTGAAGGCAATAGTGTAAT 1788
Query 1774 GAAATCGTTCAAGATTCTGGACTCAGTTT 1802
||||||||||||||||||||||| |||||
Sbjct 1789 GAAATCGTTCAAGATTCTGGACTTAGTTT 1817
> AT3G07090.1 | Symbols: | PPPDE putative thiol peptidase family
protein | chr3:2242998-2244820 REVERSE LENGTH=1046
Length=1046
Score = 145 bits (78), Expect = 2e-33
Identities = 100/110 (91%), Gaps = 4/110 (4%)
Strand=Plus/Minus
Query 1696 ctcttttcctc--ttctG-TGATTAATTTGTAGATCGTCGAACATAATATATCGAAATAT 1752
||||||||||| || || | ||||||||||||||||| |||||||||| | |||||||
Sbjct 1042 CTCTTTTCCTCTTTTATGATAATTAATTTGTAGATCGTTGAACATAATACA-CGAAATAC 984
Query 1753 AGCTGAAGGCAATAGTGTAATGAAATCGTTCAAGATTCTGGACTCAGTTT 1802
|||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 983 AGCTGAAGGCAATAGTGTAATGAAATCGTTCAAGATTCTGGACTTAGTTT 934
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89206368465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5