BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478031
Length=796
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07110.2 | Symbols: | Ribosomal protein L13 family protein ... 1288 0.0
AT5G48760.1 | Symbols: | Ribosomal protein L13 family protein ... 680 0.0
AT3G24830.1 | Symbols: | Ribosomal protein L13 family protein ... 544 7e-154
> AT3G07110.2 | Symbols: | Ribosomal protein L13 family protein
| chr3:2252019-2253528 FORWARD LENGTH=893
Length=893
Score = 1288 bits (697), Expect = 0.0
Identities = 766/799 (96%), Gaps = 5/799 (1%)
Strand=Plus/Plus
Query 1 TAATTTCAA-AACGCTGCTCACTTTTAATCACCCCGGAGAAGTAAGCTTGCGGCTGATCA 59
|||||| || || |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 TAATTTGAATAA-GCTGCTCACTTTTAATCACCCCGGAGTAGTAAGCTTGCGGCTGATCA 59
Query 60 GAGCTGAGTG-AAAATGGTGTCTGGATCAGGAATTTGCGCGAAGCGAGTGGTGGTTGATG 118
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 60 GAGCTGAGTGAAAAATGGTGTCTGGATCAGGAATTTGCGCGAAGCGCGTGGTGGTTGATG 119
Query 119 CTCGTCACCACATGCTAGGTCGCTTGGCCTCGATTGTGGCAAAGGAGCTGCTCAATGGCC 178
|||||||||||||||||||||||||||| ||| |||| |||||||| |||||||||||||
Sbjct 120 CTCGTCACCACATGCTAGGTCGCTTGGCTTCGGTTGTAGCAAAGGATCTGCTCAATGGCC 179
Query 179 AGAAGGTTGTGGTTGTCCGGTGCGAGGAGATTTGTCTCTCCGGTGGACTTGTTCGTCAGA 238
|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 180 AGAATATTGTGGTTGTCCGGTGCGAGGAGATTTGTCTCTCCGGCGGACTTGTTCGTCAGA 239
Query 239 AGATGAAGTACATGAGGTTTCTCCGCAAGCGTATGAACACTAAACCTTCTCACGGACCTA 298
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 240 AGATGAAGTACATGAGGTTTCTCCGTAAGCGTATGAACACTAAACCTTCTCACGGACCTA 299
Query 299 TTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGTATGATTCCACACA 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGTATGATTCCACACA 359
Query 359 AGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAAGGTCTTTGAAGGAGTTCCTACTC 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAAGGTCTTTGAAGGAGTTCCTACTC 419
Query 419 CATATGACAAGATCAAGAGGATGGTCATTCCTGATGCTCTCAAGGTCTTGAGGCTGCAGG 478
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 420 CATATGACAAGATCAAGAGGATGGTCGTTCCTGATGCTCTCAAGGTCTTGAGGCTGCAGG 479
Query 479 CTGGCCACAAATACTGTCTGTTGGGTCGCCTTTCTTCTGAAGTCGGATGGAACCACTACG 538
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 480 CTGGACACAAATACTGTCTGTTGGGTCGCCTTTCTTCTGAAGTCGGGTGGAACCACTACG 539
Query 539 ACACCATCAAGCAGGAGCTGGAGAACAAGAGAAAGGAAAGAGCTCAAGTTGTTTATGAAA 598
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 540 ACACCATCAAGCAGGAGCTGGAGAACAAGAGAAAGGAAAGAGCTCAAGCTGTTTATGAGA 599
Query 599 GAAAGAAGCAACTTAACAAACTCAGAGCCAAGGCCGAGAAGGTTGCTGAAGAGAAGCTTG 658
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 600 GAAAGAAGCAACTTAGCAAACTCAGAGCTAAGGCCGAGAAGGTTGCTGAAGAGAAGCTTG 659
Query 659 GATCTCAATTGGAAGTTCTTGCACCAGTCAAGTACTGAATTCTATCGGTTTATCGTTTTT 718
||||||||||||| ||||||||||| |||||||||||||||| ||| ||||||||| |||
Sbjct 660 GATCTCAATTGGATGTTCTTGCACCCGTCAAGTACTGAATTCAATCAGTTTATCGTATTT 719
Query 719 GAATGTTTCCT-CAAGTTTTGCTCCGACATTATACTATCATATTACGAAGTTCTGTTGTA 777
|||||||| | |||||||||||| ||||||||||||| ||||||||| ||| |||||||
Sbjct 720 GAATGTTTT-TGCAAGTTTTGCTCAGACATTATACTATTATATTACGAGGTTTTGTTGTA 778
Query 778 TGCGATTTTGACTTAGTTT 796
|||||||||||||||||||
Sbjct 779 TGCGATTTTGACTTAGTTT 797
> AT5G48760.1 | Symbols: | Ribosomal protein L13 family protein
| chr5:19771138-19772722 REVERSE LENGTH=834
Length=834
Score = 680 bits (368), Expect = 0.0
Identities = 548/634 (86%), Gaps = 15/634 (2%)
Strand=Plus/Plus
Query 69 GAAAATGGTGTCTGGATCAGGAATTTGCGCGAAGCGAGTGGTGGTTGATGCTCGTCACCA 128
|||||||||||| |||||||| || ||| ||||||| || || || || || || |||||
Sbjct 33 GAAAATGGTGTCAGGATCAGGGATATGCTCGAAGCGCGTTGTCGTCGACGCGCGCCACCA 92
Query 129 CATGCTAGGTCG-CTTGGCCTCGATTGTGGC-AAAGGAGCTGCTCAATGGCCAGAAGGTT 186
|||||| || || ||| || ||||| || ||| ||||| |||||||||||||| |||
Sbjct 93 CATGCTTGGCCGTCTT-GCGTCGATCACCGCTAAA-GAGCTTCTCAATGGCCAGAAAGTT 150
Query 187 GTGGTTGTCCGGTGCGAGGAGATTTGTCTCTCCGGTGGACTTGTTCGTCAGAAGATGAAG 246
|| ||||||||||||| |||||||| |||||||| ||||| ||||||||||| ||||||
Sbjct 151 GTCATTGTCCGGTGCGAAGAGATTTGCCTCTCCGGCGGACTCGTTCGTCAGAAAATGAAG 210
Query 247 TACATGAGGTTTCTCCGCAAGCGTATGAACACTAAACCTTCTCACGGACCTATTCACTTC 306
|||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 211 TACATGAGGTTTCTTCGCAAACGTATGAACACTAAACCTTCTCATGGACCTATTCACTTC 270
Query 307 CGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGTATGATTCCACACAAGACTAAG 366
|||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 271 CGTGCTCCTTCCAAAATCTTCTGGCGTACTGTTCGCGGTATGATTCCACACAAGACGAAG 330
Query 367 CGTGGAGCTAATGCACTT-GCCCGCT-TGAAGGTCTTTGAAGGAGTTCCTACTCCATATG 424
||||||||| |||| || || || | ||||||| | |||||| ||||||||||||||||
Sbjct 331 CGTGGAGCTGCTGCA-TTAGCACG-TCTGAAGGTATATGAAGGTGTTCCTACTCCATATG 388
Query 425 ACAAGATCAAGAGGATGGTCATTCCTGATGCTCTCAAGGTCTTGAGGCTGCAGGCTGGCC 484
|||||||||||||||||||||| ||||||||||||||||| |||||||| || ||||| |
Sbjct 389 ACAAGATCAAGAGGATGGTCATCCCTGATGCTCTCAAGGTGTTGAGGCTTCAAGCTGGTC 448
Query 485 ACAAATACTGTCTGTTGGGTCGCCTTTCTTCTGAAGTCGGATGGAACCACTACGACACCA 544
||||||||||||| ||||| || |||||||||||||| || |||||||| ||||||||||
Sbjct 449 ACAAATACTGTCTATTGGGCCGTCTTTCTTCTGAAGTTGGGTGGAACCATTACGACACCA 508
Query 545 TCAAGCAGGAGCTGGAGAACAA-GAGAAAGGAAAGAGCTCAAGTTGTTTATGAAAGAAAG 603
||||| | ||||||||| ||| ||| ||||| ||||| || || ||||| || |||||
Sbjct 509 TCAAG--G-AGCTGGAGA-CAAAGAGGAAGGAGAGAGCCCACGTGGTTTACGAGCGAAAG 564
Query 604 AAGCAACTTAACAAACTCAGAGCCAAGGCCGAGAAGGTTGCTGAAGAGAAGCTTGGATCT 663
||||||||||||||||| |||| |||||||||||||| |||||||||||||| ||| |
Sbjct 565 AAGCAACTTAACAAACTTAGAGTTAAGGCCGAGAAGGTCGCTGAAGAGAAGCTCGGAGCA 624
Query 664 CAATTGGA-AGTTCTTGCACCAGTCAAGTACTGA 696
|| | || | ||||||| ||||| |||||||||
Sbjct 625 CAGCTCGATA-TTCTTGCGCCAGTTAAGTACTGA 657
> AT3G24830.1 | Symbols: | Ribosomal protein L13 family protein
| chr3:9064532-9066089 FORWARD LENGTH=920
Length=920
Score = 544 bits (294), Expect = 7e-154
Identities = 529/640 (83%), Gaps = 25/640 (4%)
Strand=Plus/Plus
Query 69 GAAAATGGTGTCTGGATCAGGAATTTGCGCGAAGCGAGTGGTGGTTGATGCTCGTCACCA 128
||| ||||||||||| ||||| || || | ||||| || || ||||| || ||||||||
Sbjct 78 GAAGATGGTGTCTGGGTCAGGGATATGTTCAAAGCGTGTCGTTGTTGACGCACGTCACCA 137
Query 129 CATGCT-AGGTCG-CTTGGCCTCGATTGTGGC-AAAGGAGCTGCTCAATGGCCAGAAG-G 184
||| | ||||| ||| || ||||| | || ||| ||| |||||||||| ||| || |
Sbjct 138 TATG-TGTGGTCGTCTT-GCTTCGATCATAGCTAAA-GAGTTGCTCAATGGACAG-AGTG 193
Query 185 TTGTGGTTGTCCGGTGCGAGGAGATTTGTCTCTCCGGTGGACTT-GTTCGTCAGAAGATG 243
|||| |||||||| || |||||||||||| | || ||||| || |||||||||||||||
Sbjct 194 TTGTTGTTGTCCGATGTGAGGAGATTTGTTTGTCTGGTGG-TTTGGTTCGTCAGAAGATG 252
Query 244 AAGTACATGAGGTTTCTCCGCAAGCGTATGAACACTAAACCTTCTCACGGACCTATTCAC 303
||||||||||||||||| | || || |||||||||||||||||||| || ||||||||
Sbjct 253 AAGTACATGAGGTTTCTTAGGAAACGCATGAACACTAAACCTTCTCATGGTCCTATTCAT 312
Query 304 TTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGTATGATTCCACACAAGACT 363
||||||||||| || ||||||||||||||||||||||| || |||||||||||||||||
Sbjct 313 TTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGGGATGATTCCACACAAGACC 372
Query 364 AAGCGTGGAGCTAATGCACTTGCCCGCTTGAAGGTCTTTGAAGGAGTTCCTAC-TCCATA 422
|||||||| ||| ||| ||||| || |||||||| ||||| ||||| || || ||| ||
Sbjct 373 AAGCGTGGTGCTGCTGCTCTTGCACGTTTGAAGGTGTTTGAGGGAGTACC-ACCTCCTTA 431
Query 423 TGACAAGATCAAGAGGATGGTCATTCCTGATGCTCTCAAGGTCTTGAGGCTGCAGGCTGG 482
||||||| ||||||| |||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 432 TGACAAGGTCAAGAGAATGGTCATTCCTGATGCTCTCAAGGTGTTGAGGCTTCAGGCTGG 491
Query 483 CCACAAATACTGTCT-GTTGGGTCGCCTT-TCTTCTGAAGTCGGATGGAACCACTACGAC 540
||||| ||||| || |||||| || || ||||||||||| || |||||||| |||||
Sbjct 492 TCACAAGTACTG-CTTGTTGGGACGT-TTGTCTTCTGAAGTTGGCTGGAACCATTACGAT 549
Query 541 ACCATCAAGCAGGAGCTGGAGAACAAGAGAAAGGAAAGAG-CTCAAGTTGTT-TATGAAA 598
||||||||| | |||| ||| ||||||||||| || | | |||| | || |||||
Sbjct 550 ACCATCAAG--G-AGCTTGAGGTGAAGAGAAAGGAGAG-GTCACAAGCT-TTGTATGAGC 604
Query 599 GAAAGAAGCAACTTAACAAACTCAGAGCCAAGGCCGAGAAGGTTGCTGAAGAGAAGCTTG 658
| ||||||||||| | ||| ||||| || ||||||||||||||||| || ||||| ||||
Sbjct 605 GTAAGAAGCAACTCACCAAGCTCAGGGCAAAGGCCGAGAAGGTTGCAGAGGAGAAACTTG 664
Query 659 GATCTCAATTGGAAGTTCTTGCACC-AGTCAAGTACTGAA 697
|||| || | || ||||||||| | | ||||||||||||
Sbjct 665 GATCCCAGCTCGATGTTCTTGCATCGA-TCAAGTACTGAA 703
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38730527337
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5