BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478032
Length=1217
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07120.1 | Symbols: | RING/U-box superfamily protein | chr3... 1971 0.0
> AT3G07120.1 | Symbols: | RING/U-box superfamily protein | chr3:2254479-2255742
FORWARD LENGTH=1264
Length=1264
Score = 1971 bits (1067), Expect = 0.0
Identities = 1169/1219 (96%), Gaps = 4/1219 (0%)
Strand=Plus/Plus
Query 1 ATGCAAGAGGTAACATTTCGATGCATGGAGTTAAATGTCGGCGTTAAAGAGCCGTAGTAA 60
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 48 ATGCACGAGGTAACATTTCGATGCATGGAGTTAAATGTCAGCGTTAAAGAGCCGTAGTAA 107
Query 61 CTCGTTAGCCGGACTAAGTCTAGACGCTGTGCTTGGCGGCGAGATCGTTATACAACCGTC 120
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct 108 CTCGTTAGCCGGACTAAGTCTAGACGCTGTGCTTGGCGGCGAGATCCTTATAGAACCGCC 167
Query 121 ATCTCCCCCATCGCCACCACCTTTACCATCAAAATCTCTTGTACCGCACCG-CGCAACAA 179
||||| || ||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 168 ATCTCTACCGTCGCCACCACCTTTACCATCAAAATCTCTTGTACCGCACCGTC-CAACAA 226
Query 180 GCCAAACGCTTTTTGATATCATACGTGAGGAATACGCCAAAGAAGGGCACAAAGATCGTA 239
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 227 GCCAAACCCTTTTTGATATCATACGTGAGGAATACGCCAAAGAAGGGCACAAAGATCGGA 286
Query 240 CCACGTGGCAGATTTTCCGTGAGAAACTCCGTCTCAAACGAACCGGTTCTGCTTGGACCT 299
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 287 CCACGTGGCAGATTTTCCGTGAGAAACTCCGTCTTAAACGAACCGGTTCTGCTTGGACCT 346
Query 300 CGTCTCTTCATATCCCTGCTTCGGATATTCTTATCCCTAATCCCAAACACCTTGGAACAG 359
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 347 CGTCTCTTCATATCCCTGCTTCGGATATCCTTATCCCTAATCCCAAACACATTGGAACAG 406
Query 360 CGTTCCGATCACACTCCGCCGGTTTAAACATCCGAGATCTGGTTTACGCTGTTCCAATGT 419
||||||| || ||||||||||||||||||||||||||||||||| ||||| | || ||||
Sbjct 407 CGTTCCGGTCTCACTCCGCCGGTTTAAACATCCGAGATCTGGTTCACGCTATACCGATGT 466
Query 420 CGGATCCACCTGGTTCTTCAGGACGCGCTATGTTCACACGCGGATCATCAATGCGGGTCG 479
| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 467 CAGATCCACCTGGTTCTTCAGGACGCGCTATGTTCACGCGCGGATCTTCAATGCGGGTCG 526
Query 480 GGTCGAGCAAAAACCCGGACGATTCGCCTGACATCAGCGTTCTTGGAGATGGACCACCGT 539
||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 527 GGTCGAGTAAAAACCCGGACGATTCGCCTGACATCAGCGTTCTTGAAGATGGGCCACCGT 586
Query 540 CTAGGAGTTTTAAGCCGCAGTTATCACGGCACGATTCCGTTAGAGATCACAGTGACGGCG 599
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 587 CTAGGAGTTTTAAGCCGCAGTTATCACGGCACGATTCCGTTAGAGATCACAGCGAAGGCG 646
Query 600 AAGAAGATAACAGACGACGTCATCCGATCGTCACGTTCGTGGAAGAGAGGCAAATGTCGG 659
||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 647 AAGAAAACAACAGACGACGTCATCCGATCGTCACGTTCGTGGAAGAGAGACAAATGTCGG 706
Query 660 CGAGAGAAGCGGTTGCTGCTCAAGAAGCGGCGGAAGCTGAAGCGGCGGCGGCTGGAGGAA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 CGAGAGAAGCGGTTGCTGCTCAAGAAGCGGCGGAAGCTGAAGCGGCGGCGGCTGGAGGAA 766
Query 720 GCGAAGACGAAGACGACGATGACGAAGAGGATGATTCAGGAGAAACAGAGGAGA-GAAAA 778
||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 767 GCGAAGATGAAGACGACGATGACGAAGAGGATGATTCAGGAGAAACAGAGGAGATG-AAA 825
Query 779 TCATCTTCAGGTTCTGAACCGAAACAGACGATGTCTCTGATGGATCTGTTGGAAGAAACA 838
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 826 TCATCTTCAGCTTCTGAGCCGAAACAGACGATGTCTCTGATGGATCTGTTGGAAGAAACA 885
Query 839 GATCGACAAATGGGATTAACAGGATCGAGATACGCCATGGATgaagatgaagagtacgaa 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 GATCGACAAATGGGATTAACAGGATCGAGATACGCCATGGATGAAGATGAAGAGTACGAA 945
Query 899 gaagacgaagaagatgagaattacgaagaagaaggagatggtcaaggaggaggagaaggT 958
|||||||||||||||||||| |||| |||||||||||| |||| ||||||||||||||
Sbjct 946 GAAGACGAAGAAGATGAGAACAACGAGGAAGAAGGAGATAGTCATGGAGGAGGAGAAGGA 1005
Query 959 GAGCTTAGTTGCTGCGTTTGCATGGTGAAAATAAAAGGCGCTTCTTTTACACCTTGTGGT 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1006 GAGCTTAGTTGCTGCGTTTGCATGGTGAAAATAAAAGGCGCTTCTTTTACACCTTGTGGT 1065
Query 1019 CACACGTTTTGTAAGCTCTGTTCTAAAGAGCTTATGGCTCAGAAAGGTCACTGTCCTGTT 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 CACACGTTTTGTAAGCTCTGTTCTAAAGAGCTTATGGCTCAGAAAGGTCACTGTCCTGTT 1125
Query 1079 TGCAGCAGCTTCGTCCTCGAGTTCCTTGAGATCttttagaaactaattttgaaacttttt 1138
|||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1126 TGCAGCAGCTTCGTTCTCGAGTTCCTTGAGATCTTTTAGAAACAAATTTTGATACTTTTT 1185
Query 1139 gtttatttttggagaaatttttaaacttttatttttCTTGGGAGAAACTGTTACATGATC 1198
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1186 GTTTATTTTTGGAGAAATTTTGAAACTTTTATTTTTCTTGGGAGAAACTGTTACATGATC 1245
Query 1199 AAAGTCCTAAATCTTTTAT 1217
||||||| ||| ||||||
Sbjct 1246 AAAGTCCCAAAAATTTTAT 1264
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59788849095
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5