BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478033
Length=1663
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07130.1 | Symbols: ATPAP15, PAP15 | purple acid phosphatase... 2588 0.0
> AT3G07130.1 | Symbols: ATPAP15, PAP15 | purple acid phosphatase
15 | chr3:2255710-2258005 REVERSE LENGTH=1676
Length=1676
Score = 2588 bits (1401), Expect = 0.0
Identities = 1577/1663 (95%), Gaps = 7/1663 (0%)
Strand=Plus/Plus
Query 1 AACGATGACGTTTTTACTACTTCTGCTCTTCTGCTTTCTCTCCCCGGCAATCTTCTTCGC 60
||||||||||||| |||||||||| ||||||||||||||||| |||||||||| || |||
Sbjct 21 AACGATGACGTTTCTACTACTTCTACTCTTCTGCTTTCTCTCGCCGGCAATCTCCTCCGC 80
Query 61 CGACTCTATCCCTTCAACGTTGGACGGACCGTTCGTTCCGGTGACGGTGCCGTTAGACAC 120
| ||||||| || ||||| || || |||||||||||||||||||||||||| || |||||
Sbjct 81 CCACTCTATTCCGTCAACTTTAGATGGACCGTTCGTTCCGGTGACGGTGCCATTGGACAC 140
Query 121 CTCTCTCCGGGGAAAAGCCATCGATTTACCCGATACCGATCCTCGCGTCCGCCGCCGTGT 180
|||||||||||| ||||||||||||| ||||| |||||||| ||||||||||| |||||
Sbjct 141 CTCTCTCCGGGGGCAAGCCATCGATTTGCCCGACACCGATCCCCGCGTCCGCCGGCGTGT 200
Query 181 CACCGGATTCGAGCCGGAGCAAATTTCCCTCTCCCTTTCCTCCGATCATGATTCCATCTG 240
|| || || |||||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct 201 CATTGGTTTTGAGCCGGAGCAAATCTCTCTCTCCCTCTCCTCCGATCATGATTCCATCTG 260
Query 241 GGTCTCTTGGATCACAGGTGAGTTCCAAATCGGAAAGAAGGTGAAGCCATTAGATCCGAC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 GGTCTCTTGGATCACAGGTGAGTTCCAAATCGGAAAGAAGGTGAAGCCATTAGATCCGAC 320
Query 301 AAGTATCAAGAGTGTTGTCCAATTCGGGACCTTGAGGCACTCACTGAGTCATGAAGCTAA 360
||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 321 AAGTATCAACAGTGTTGTTCAATTCGGAACCTTGAGGCACTCACTGAGTCATGAAGCTAA 380
Query 361 AGGACATTCACTTGTTTATAGTCAACTTTACCCTTTCGACGGTCTCCTTAATTACACTTC 420
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 381 AGGACATTCACTTGTTTATAGTCAACTTTATCCTTTCGACGGTCTCCTTAACTACACTTC 440
Query 421 TGGAATCATACACCATGTTCGCATTACAGGGCTGAAACCAAGTACTATATATTACTATCG 480
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 441 TGGAATCATACACCATGTTCGCATTACAGGGCTGAAACCAAGTACTATCTATTACTATCG 500
Query 481 ATGTGGAGATCCTTCAAGACGGGCTATGAGTAAGATACACCATTTCAGGACAATGCCTGT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 501 ATGTGGAGATCCTTCAAGACGGGCTATGAGTAAGATACACCATTTCAGGACAATGCCTGT 560
Query 541 TTCTAGTCCCTCAAGTTATCCTGGTCGAATAGCGGTTGTGGGTGATCTTGGTCTCACTTA 600
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 561 TTCTAGTCCCTCGAGTTATCCTGGTCGAATAGCGGTTGTTGGTGATCTTGGTCTCACTTA 620
Query 601 TAACACAACTGATACAATTAGTCACTTGATTCATAATTCTCCGGATCTTGTTTTATTGAT 660
|||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 621 TAACACTACTGATACAATTAGTCACTTGATTCATAACTCTCCGGATCTCATTTTATTGAT 680
Query 661 CGGCGATGTGAGTTATGCAAACTTGTATCTAACAAACGGGACTAGCTCCGATTGTTATTC 720
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 681 CGGCGACGTGAGTTATGCAAACTTGTATCTAACAAACGGGACTAGCTCTGATTGTTATTC 740
Query 721 TTGCTCTTTCCCTGAGACACCTATACATGAGACGTATCAGCCACGTTGGGACTACTGGGG 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TTGCTCTTTCCCTGAGACACCTATACATGAGACGTATCAGCCACGTTGGGACTACTGGGG 800
Query 781 TAGGTTTATGGAGAATCTGACTTCTAAAGTTCCTTTGATGGTCATTGAAGGGAACCATGA 840
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 801 TAGGTTTATGGAGAATCTGACTTCCAAAGTTCCTTTGATGGTGATTGAAGGGAACCATGA 860
Query 841 GATCGAATTGCAAGCCGAGAACAAGACCTTTGAAGCTTATAGTTCAAGATTCGCTTTCCC 900
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 861 GATCGAATTGCAAGCAGAGAACAAGACATTTGAAGCTTATAGTTCAAGATTCGCTTTCCC 920
Query 901 TTTTAAAGAAAGCGGCTCGTCTTCTACGCTCTATTATTCTTTTAACGCTGGCGGGATTCA 960
|||||| ||||||||||||||||||||||| |||||||| ||||||||||| ||||||||
Sbjct 921 TTTTAATGAAAGCGGCTCGTCTTCTACGCTATATTATTCCTTTAACGCTGGTGGGATTCA 980
Query 961 CTTTGTCATGCTCGGTGCCTACATTGCTTATGACAAATCAGCGGAACAATACGAGTGGTT 1020
|||||| ||||| |||||||||||||| ||||||||||||||||||||||| || |||||
Sbjct 981 CTTTGTTATGCTTGGTGCCTACATTGCGTATGACAAATCAGCGGAACAATATGAATGGTT 1040
Query 1021 AAAGAAAGATTTGGCTAAAGTGGATAGATCGGTAACTCCATGGTTAGTAGCTTCTTGGCA 1080
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1041 AAAGAAGGATTTGGCTAAAGTCGATAGATCGGTAACTCCATGGTTAGTAGCTTCTTGGCA 1100
Query 1081 TCCACCTTGGTATAGTTCTTATACAGCGCATTACAGAGAAGCAGAATGTATGAAAGAAGC 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1101 TCCACCTTGGTATAGTTCTTATACAGCGCATTACAGAGAAGCAGAATGTATGAAAGAAGC 1160
Query 1141 TATGGAGGAATTACTTTACTCTTATGGTACCGACATTGTCTTTAACGGACATGTTCATGC 1200
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1161 TATGGAGGAATTACTTTATTCTTATGGTACCGACATTGTCTTTAACGGACATGTGCATGC 1220
Query 1201 TTATGAACGTTCGAACAGAGTTTACAATTACGAACTGGACCCGTGTGGTCCGGTTTACAT 1260
||||||||| ||||||||||| |||||||||||||||||||| |||||||| ||||||||
Sbjct 1221 TTATGAACGGTCGAACAGAGTATACAATTACGAACTGGACCCATGTGGTCCAGTTTACAT 1280
Query 1261 TGTGGTTGGTGATGGAGGTAACCGTGAAAAGATGGCGATTGAGCACGCCGATGAACCCGG 1320
|||| |||||||||||||||||||||||||||||||||| ||||| || ||||| |||||
Sbjct 1281 TGTGATTGGTGATGGAGGTAACCGTGAAAAGATGGCGATCGAGCATGCAGATGACCCCGG 1340
Query 1321 TAAATGTCCTGAGCCGTTAACCACGCCGGATCCAGTCATGGGTGGGTTTTGCGCGAGGAA 1380
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 1341 TAAATGTCCAGAGCCGTTAACCACGCCCGATCCAGTCATGGGTGGGTTTTGCGCGTGGAA 1400
Query 1381 CTTCACCCCGTCTGGTAAATTCTGTTGGGATCGGCAACCTGATTATAGTGCCATGAGAGA 1440
|||||| ||||||| ||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 1401 CTTCACGCCGTCTGATAAGTTCTGTTGGGATCGGCAACCTGATTATAGTGCCCTGAGAGA 1460
Query 1441 AAGCAGCTTTGGCCATGGAATCCTAGAGATGAAGAACGAGACATGGGCACTATGGACATG 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1461 AAGCAGCTTTGGCCATGGAATCCTAGAGATGAAGAACGAGACATGGGCACTATGGACATG 1520
Query 1501 GTATAGGAATCAAGACTCGAGCAGTCAAGTCGGAGATCAGATTTACATTGTCAGACAACC 1560
||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||
Sbjct 1521 GTATAGGAATCAAGACTCGAGCAGTGAAGTCGGAGATCAGATTTATATTGTGAGACAACC 1580
Query 1561 TGATCGATGTCCGCTTCACCACCGCCTTGTTAACCATTGCTAAGCTCAAAGTTCAAACAG 1620
|||||||||||||||||||||||||||||||||||||||||||| | | |||||||
Sbjct 1581 TGATCGATGTCCGCTTCACCACCGCCTTGTTAACCATTGCTAAG---A---T-CAAACAG 1633
Query 1621 AGATGGTCTAATAAAAGATTTAGGACTTTGATCATGTAACAGT 1663
|||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1634 AGATGGTCTAATAAAATTTTTGGGACTTTGATCATGTAACAGT 1676
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82178292165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5