BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478034
Length=2093
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07140.1 | Symbols: | GPI transamidase component Gpi16 subu... 3182 0.0
> AT3G07140.1 | Symbols: | GPI transamidase component Gpi16 subunit
family protein | chr3:2261192-2263737 FORWARD LENGTH=2126
Length=2126
Score = 3182 bits (1723), Expect = 0.0
Identities = 1988/2112 (94%), Gaps = 33/2112 (2%)
Strand=Plus/Plus
Query 1 GGAGCTCAGCGTTAATACTCTGTAATGCTC-GATCCGCGGTAACACAAGTCAGTGACCTA 59
||||||||||||| |||||||||||||| | ||||||||||||| |||||||||||||||
Sbjct 1 GGAGCTCAGCGTTTATACTCTGTAATGC-CAGATCCGCGGTAACGCAAGTCAGTGACCTA 59
Query 60 CTCCGGCG--------T---TCCGATTATGGCTAGCCTTCTTCGATCCTTAATCCTTTTG 108
|||||||| | ||||||||||||||| ||||||||||||||||||||||||
Sbjct 60 CTCCGGCGTTTATCACTGAATCCGATTATGGCTAGTCTTCTTCGATCCTTAATCCTTTTG 119
Query 109 TTAATTGTGCAATCGTTTTTGGTTGCGATCGCTTTTGGGTCGAACGAAGTTGAAGAATTC 168
|||| |||||||| |||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 120 CTAATCGTGCAATCATTTTTGGTTGCGATCGCTTTCGGGTCGAAAGAAGTTGAAGAATTC 179
Query 169 AGCGAGGCATTGCTCTTGAAGCCTTTGCCTGATCGAAAGGTTTTAGCTCACTTCCATTTC 228
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||
Sbjct 180 AGCGAGGCATTGCTCTTGAAGCCTTTACCTGATCGAAAAGTTTTAGCTCACTTCCACTTC 239
Query 229 GAAAACCGAGCTCCTCCTTCAAATTCCCATGGCCGCCATCACCATCTCTTCCCGAAAGCT 288
|| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 240 GAGAACCGAGCTCCTCCGTCAAACTCCCATGGCCGCCATCACCATCTCTTCCCGAAAGCT 299
Query 289 ATTTCTCAGTTGGTTCAGAAATTCCGGGTCAAGGAGATGGAGTTATCTTTTACTCAGGGT 348
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 300 ATTTCTCAGTTGGTTCAGAAGTTTCGGGTCAAGGAGATGGAGTTATCTTTTACTCAGGGT 359
Query 349 CGTTGGAATCATGAACATTGGGGAGGATTTGACCCTCTATCAAGTATGAACGCAAAGCCT 408
|| ||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 360 CGATGGAACCATGAACATTGGGGAGGATTTGACCCTCTATCAAGTATGAATGCGAAGCCT 419
Query 409 GTTGGGGTGGAGCTGTGGGCTGTGTTTGATGTTCCTCATTCTCAGGTTGATACTTCTTGG 468
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 420 GTTGGTGTGGAGCTGTGGGCTGTGTTTGATGTTCCTCAGTCTCAGGTTGATACTTCTTGG 479
Query 469 AAGAACTTAACTCACGCACTTTCAGGGCTTTTCTGTGCTTCCATCAACTTTCTAGAATCT 528
|||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 480 AAGAACTTAACTCATGCACTGTCAGGGCTTTTCTGTGCTTCCATCAATTTTCTAGAATCT 539
Query 529 TCCACTTCATATGCTGCTCCTACATGGGGATTTGG-CCCAAATTCGGACAAGCTGAGGTA 587
||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||
Sbjct 540 TCCACTTCATATGCTGCTCCTACATGGGGATTTGGACCC-AATTCTGACAAGCTGAGGTA 598
Query 588 TGGTTCACTGCCACGGGAAACTGTTTGTACTGAGAACTTGACCCCATGGCTGAAGTTGCT 647
||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||| ||
Sbjct 599 TGGTTCACTGCCACGTGAAGCTGTTTGTACTGAGAACTTGACCCCATGGCTAAAGTTACT 658
Query 648 TCCGTGTAGAGACAAGGATGGAATTTCTGCGTTAATGAATAGGCCATCTGTTTACAGAGG 707
||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 659 TCCTTGTAGAGATAAGGATGGTATTTCTGCGTTAATGAATAGGCCATCTGTTTACAGAGG 718
Query 708 GTTTTATCATTCTCAGAGATTGCATTTATCCACGGTTGAGTCTGGTCAAGAGGGATTGGC 767
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 719 GTTTTATCATTCTCAGAGATTGCATTTATCCACGGTTGAATCTGGTCAAGAGGGATTGGG 778
Query 768 TTCTGGCATAGTGCTGGAGCAGACTCTTACTGTTGTTCTTCAGCCTGAGACTACTTCTGT 827
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 779 TTCTGGTATAGTGCTGGAGCAGACGCTTACTGTTGTTCTTCAGCCTGAGACTACTTCTGT 838
Query 828 TGAATCAAATATGCAGCCAAGTTGGTCCCTCAGCTCCCTCTTTGGGCGAAAAGTAGTTGG 887
|||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||
Sbjct 839 TGAATCAAATATGCAGCCAAGTTGGTCCCTCAGCTCCCTCTTTGGGAGACAAGTTGTTGG 898
Query 888 GAGATGTATTCTTGCAAAGTCAAGTAATGTATATCTTCAATTGGAGGGTCTTCTTGGTCA 947
||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||| |
Sbjct 899 GAGATGTGTTCTTGCAAAGTCAAGTAATGTGTATCTTCAATTGGAAGGTCTTCTTGGTTA 958
Query 948 CGAATTAAAGAACATGGATACGGAAATAGAAGCACACGAACTCTGGAAGAATGCAGAGTT 1007
||||| ||| ||| ||||||| ||||||||||||||| |||| |||||||||||||||||
Sbjct 959 CGAATCAAAAAACGTGGATACAGAAATAGAAGCACACCAACTATGGAAGAATGCAGAGTT 1018
Query 1008 TGAATTATCTCTTAAGCCAGACAGGGTTCTTCGAGAAAGCAGCAGCTTTCTTTTTATCTT 1067
|||||| |||||||||||||| |||||| ||||||||||| |||||||||||||||| ||
Sbjct 1019 TGAATTGTCTCTTAAGCCAGAGAGGGTTATTCGAGAAAGCTGCAGCTTTCTTTTTATTTT 1078
Query 1068 TGATATTGACAAATCAAGTGACAGCGAGCCATTTGATCTTGGCCTTACTTGGAAGCTTCC 1127
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1079 TGATATTGACAAATCAAGTGACAGCGAGCCATTTGATCTTGGCCTTACTTGGAAGCGTCC 1138
Query 1128 CTCAAAGTGGTCATGTCAACAAGCTCCATTACACGCAAGTCGGTTTTTGATGGGAAGCGG 1187
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1139 CTCAAAGTGGTCATGTCAACAAGCTCCATTACACTCGAGTCGGTTTTTGATGGGAAGCGG 1198
Query 1188 GAACGAAAGGGGTGCAATAGCCATCTTGTTAAAAGCGACAGAATCTCAGGAGAAGTTATC 1247
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 GAACGAAAGAGGTGCAATAGCCATCTTGTTAAAAGCGACAGAATCTCAGGAGAAGTTATC 1258
Query 1248 AGGCAGAGATCTCACTAATGGCCACTGTACAATAAAAGCAAACATTTTCCAGATTTTCCC 1307
|||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||
Sbjct 1259 AGGCAGAGATCTCACTAATGGCCAATGTACAATAAAAGCAAATATCTTCCAGATTTTCCC 1318
Query 1308 ATGGTATATTAAGGTTTATTATCATAGTCTACAAATCTTTGTTGACCAACAACAGACGAC 1367
|||||||||||||||||||||||||| ||||||||||||||| || |||||||||| |||
Sbjct 1319 ATGGTATATTAAGGTTTATTATCATACTCTACAAATCTTTGTGGATCAACAACAGAAGAC 1378
Query 1368 AGACAGTGAGGTCTTAAAGAAGATCAATGTCTCACCATCTACGGATAAGGTGTCATCTGG 1427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 AGACAGTGAGGTCTTAAAGAAGATCAATGTCTCACCATCTACGGATAAGGTGTCATCTGG 1438
Query 1428 CATGATGGAGATGATGCTGGAACTACCATGTGAAGTGAAATCTGTAGCCATATCAATCGA 1487
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1439 CATGATGGAGATGATGTTGGAACTACCATGTGAAGTGAAATCTGTAGCCATATCAATTGA 1498
Query 1488 ATATGATAAGGGTTTTCTACATATAGATGAATATCCTCCTGATGCTAATCAAGGATTCGA 1547
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 ATATGATAAGGGTTTTCTGCATATAGATGAATATCCTCCTGATGCTAATCAAGGATTCGA 1558
Query 1548 CATTCCATCGGCTCTGATAAGCTTCCCCAATCATCATGCTAGTTTAGATTTCCAAGAAGA 1607
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1559 CATTCCATCGGCTTTGATAAGCTTCCCCGATCATCATGCTAGTTTAGATTTCCAAGAAGA 1618
Query 1608 GCTCAGCAAATCCCCCTTATTATCAAGTTTTAAGGAAAAATCTTTAGTTCGCTCTTACAC 1667
||||||||| || ||||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct 1619 GCTCAGCAACTCGCCCTTATTATCAAGTTTAAAGGAAAAATCCTTAGTACGCTCTTACAC 1678
Query 1668 AGAAGTATTGCTCGTACCATTGACAACCCCAGATTTTAGCATGCCTTACAACGTAATCAC 1727
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1679 AGAAGTATTGCTCGTACCTTTGACAACCCCTGATTTTAGCATGCCTTACAACGTAATCAC 1738
Query 1728 GATCACATGCACCATCTTCGCATTGTATTTCGGATCATTGCTCAATGTTCTACGTAGACG 1787
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1739 GATCACATGCACCATCTTCGCATTGTATTTTGGATCATTGCTAAATGTTCTACGTAGACG 1798
Query 1788 AATCGGCGAAGAAGAAAGGTTTCTCAAAAGCCAAG--G-AAAGAAAACAGGTGGGCGGCT 1844
||| || |||||||||||||||||||||||||||| | ||||||||||||||||| |
Sbjct 1799 AATTGGTGAAGAAGAAAGGTTTCTCAAAAGCCAAGCAGGAAAGAAAACAGGTGGGC---T 1855
Query 1845 TAAGCAGTTATTATCGAGAATCACAGCCAAGATTAGAGGGAGACCAATTGAAGAACAATC 1904
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1856 TAAGCAGTTATTATCGAGAATCACAGCCAAGATTAGAGGGAGACCAATTGAAGCACCATC 1915
Query 1905 ATCATCAGAGTCGCCTGCAGCTCAATCTTCGGTCTTGTCTAGTAAACTTATCTTCAAAAT 1964
||||||||| || || | | ||||||||||||||||||||||||||||| |||||
Sbjct 1916 ATCATCAGAA--GC-TG-A----A-TCTTCGGTCTTGTCTAGTAAACTTATCTTAAAAAT 1966
Query 1965 CATTTTAGTTGCAGGAGCTGCTGCAGCGTGGCAATATTTTTCCACGGACAAGTAGACT-A 2023
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct 1967 CATATTAGTTGCAGGAGCTGCTGCAGCGTGGCAATATTTTTCCACGGACGAGTAGGCTTA 2026
Query 2024 AA-CTTT-GAAGAAATACCAGTTGTACCATATGTATCAACAAGGTAAttttttttGGATC 2081
|| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 2027 AAACTTTTGAAGAAATACCAGTTGTACCATATGTATCAACAAGGTAATTTTTTTGGGACC 2086
Query 2082 GTGTAAGATTTG 2093
||||||||||||
Sbjct 2087 GTGTAAGATTTG 2098
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103764526515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5