BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478041
Length=977
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07190.1 | Symbols: | B-cell receptor-associated protein 31... 1478 0.0
> AT3G07190.1 | Symbols: | B-cell receptor-associated protein
31-like | chr3:2285777-2287447 REVERSE LENGTH=1157
Length=1157
Score = 1478 bits (800), Expect = 0.0
Identities = 927/987 (94%), Gaps = 14/987 (1%)
Strand=Plus/Plus
Query 1 TTTTGTTTTTGTTTTAGCGTTTCCCGATCTGGGAATTGGGTTTCAGCTCCAAAGGTGTAA 60
||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||| |||
Sbjct 118 TTTTGTTTTCGTTTTAGCGTTTCCCGATCTGTGAATTGGGTATCAGCTCCAAAGGTTTAA 177
Query 61 TGCCCAG-AATTGTTATTGAGGACGAGAGTTTAGGGTTTTTACAGTGCGAGTGAATTTTT 119
||||||| || ||||| |||||||||||||||||| | |||||||||||||||| |||
Sbjct 178 TGCCCAGTAA-AGTTATCGAGGACGAGAGTTTAGGGGTCTTACAGTGCGAGTGAA-TTTA 235
Query 120 GATTTAAAGGCACAAACTTTACCTTTTGGTCGGAACTGGGAAgggggggAATCAGACATG 179
|||| ||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 236 GATTAAAAGGTACAAACTTTACCTTTTGGTCGGAACTGGGAAGAGGGGGAATCGGACATG 295
Query 180 ATTCAGTTACTATTCCTGGTTCTGTTCGTAGAAGGTGCGATTGCGTTCTTACTACTGGTG 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 ATTCAGTTACTATTCCTGGTTCTGTTCGTAGAAGGTGCGATTGCGTTCTTACTACTGGTA 355
Query 240 AAGATTGGTCCTTTAAGGGAGCTTGTAATGAAGAGCTTAGACCAGCTTAAATTGGGGAAA 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 AAGATTGGTCCTTTAAGGGAGCTTGTAATGAAGAGCTTAGACCAGCTTAAATTGGGGAAA 415
Query 300 GGTCCTGCTACTGTGAAAACCATCGCTGGAACCATGTCTGTCATCCTCTTGTCGAATCTC 359
||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 416 CGTCCTGCTACTCTGAAAACCATCGCTGGAACCATGTCTGTGATCCTCCTGTCGAATCTC 475
Query 360 ATGAATATCATCAAGATCCAGAACAAGGGTGCCAAACTTGGGACAATGTCTCCTATGGAT 419
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 476 ATGAATATCATTAAGATCCAGAACAAGGGTGCCAAACTTGGGACAATGTCTCCAATGGAT 535
Query 420 CAAGTCCTCTGGAGAACACACTTGCTTGAGGCTTCTCTTATGGGTGTTGTGCTCTTTTTC 479
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 536 CAAGTCCTCTGGAGAACACACTTGCTCGAGGCTTCTCTTATGGGTGTTGTGCTCTTTTTT 595
Query 480 GGCTTCATCATTGACCGGACACATCATTACCTCGAAAAGCTTATCACTTTAAGAAGCAAT 539
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 596 GGCTTCATTATTGACCGGACACATCATTACCTCGAAAAGCTAATCACTTTAAGAAGCAAT 655
Query 540 GTCGGGTCATCgaaaggagaactggaacaacttaggaaggagagaaccgaactgaaggaa 599
||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||
Sbjct 656 GTCGGGTCATCGAAAGGAGAACTAGAAGAACTTAGGAAGGAGAGAATCGAACTGAAGGAG 715
Query 600 aaagaagagaagaCATCCAAGGAAATTAAACAGCTGAAAGAAAAACTGTCCTGTGTTTCA 659
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 716 AAAGAAGAGAAGACATCCAAGGAAATTAAGCAGCTGAAAGAAAAACTGTCGTGTGTTTCA 775
Query 660 GAGAATCTGAAGAAAGC-AGAGAAGGAATCCAAAGAGAAAGAAACAAAGCTCGAAACAGC 718
|||||||| |||||| | ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 776 GAGAATCTCAAGAAA-CTAGAGAAGGAATCCAAAGAGAAAGAAACGAAGCTCGAAACAGC 834
Query 719 TGAAGCCCATGTGACAGCTCTTCAAAAGCAGTCTTCAGAGCTATTGTTGGAGTATGACAG 778
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 835 TGAAGCCCATGTCACAGCTCTCCAAAAGCAGTCTTCAGAGCTATTGTTGGAGTATGACAG 894
Query 779 ATTGCTAGAAGACAACCAGAATCTCCAAAGCCAGATTTTGGTAGGAACaaaaaaaaCCTG 838
|||||||||||||||||| ||||||||||||||||||||||| ||||| || ||||||||
Sbjct 895 ATTGCTAGAAGACAACCAAAATCTCCAAAGCCAGATTTTGGTTGGAACCAAGAAAACCTG 954
Query 839 AAGTGATATAAGATTCTTAAGAGCTCTTTGATAGAGTTTTAGAGTGTTT-GTAAACGAAT 897
||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 955 AAGTGATTTAAGATTCTTAAGAGCTCTTTGATAGAGTTTTAGAGTGTTTTGTGAACGAAT 1014
Query 898 GCGGAAATGGCA--T--C--CGA-GGAATTCTTGTACTCGTTTATTTTTTGCTCTCTTGG 950
|||||||||| | | | | | ||||||||||||||||||| |||||||| |||||||
Sbjct 1015 GCGGAAATGGTAAGTGGCAACCAAGGAATTCTTGTACTCGTTTTTTTTTTGCGCTCTTGG 1074
Query 951 TTCTTCACCCATTGATGATGTCTTCCA 977
||| | ||||||||||| |||||||||
Sbjct 1075 TTCCT-ACCCATTGATGCTGTCTTCCA 1100
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47822907944
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5