BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478044
Length=1216
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07220.1 | Symbols: | SMAD/FHA domain-containing protein |... 1825 0.0
AT3G07260.1 | Symbols: | SMAD/FHA domain-containing protein |... 830 0.0
> AT3G07220.1 | Symbols: | SMAD/FHA domain-containing protein
| chr3:2297886-2299572 FORWARD LENGTH=1210
Length=1210
Score = 1825 bits (988), Expect = 0.0
Identities = 1150/1225 (94%), Gaps = 24/1225 (2%)
Strand=Plus/Plus
Query 1 TCGTTTCAGAAATTATTACGATTGCAATCCCTAATCCCTAATTTAGAAGTCCCGG-TGCG 59
||| |||| ||||||||||||||| | |||||||||||| |||||||||| | |
Sbjct 1 TCGATTCACAAATTATTACGATTG------C-AATCCCTAATTTGGAAGTCCCGGTTCCT 53
Query 60 CTTTTGATCAAATCGGCGAATTTCACGGCATGGCTACGGCTGTTGGAGGCGGAAGCGATG 119
|||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 54 CTTTCGATCAAATCGGAGAATTTCACGGCATGGCTACGGCTGTTGGTGGCGGAAGCGATG 113
Query 120 TGGAGGTTGGATTTGCGAAGCTTCAAGGTGAGGATTTCGAGTACTATATGCAGTCGTACT 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 114 TGGAGGTTGGATTTGCGAAGCTTCAAGGTGAGGATTTCGAGTACTATATGCAGTCTTACT 173
Query 180 CCATTATACTCGGCCGGAATTCTAAGAAAGCGACCGTCGACGTTGATCTCTCATCCCTCG 239
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 174 CCATTATACTCGGCCGGAATTCTAAGAAAGCCACCGTCGACGTTGATCTCTCATCCCTCG 233
Query 240 GCGGCGGGATGAACATTTCGCGCAACCACGCTCGGATCTTCTATGACTTCAC-ACGACGC 298
|||| ||||||||||| ||||||||||||||||||||||||||||||||||| | ||||
Sbjct 234 GCGGTGGGATGAACATCTCGCGCAACCACGCTCGGATCTTCTATGACTTCACTA-GACGA 292
Query 299 CGCTTCTCTCTCGAGGTCCTTGGCAAAAATGGCTGCCTCGTTGAAGGTGTCCTCCATCTC 358
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 293 CGCTTCTCTCTCGAGGTCCTTGGCAAAAATGGCTGCCTCGTTGAAGGTGTTCTTCATCTC 352
Query 359 CCTGGGAATCCTAACGTCAAGCTCGATTCCCAAGACCTTTTGCAGATTGGTGACAAAGAG 418
||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||
Sbjct 353 CCTGGGAATCCTAACGTCAAGCTCGATTCACAAGACCTTTTGCAGATCGGAGACAAAGAG 412
Query 419 TTTTACTTTCTCCTTCCGGTTCGGAGCATTTTAGGCGGGCCATTGGGACCTAGGCACCAC 478
|| ||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 413 TTCTACTTTCTCCTACCGGTTCGGAGCATCTTAGGCGGGCCGTTGGGACCTAGGCACCAC 472
Query 479 GTCTCAGGGCAAACTAGTGTTGTTCCATACCATAATTATCAGTCAGGTCCGGGTTCTGGG 538
||||| |||||||| ||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 473 GTCTCTGGGCAAACAAGTGTTGTTCCATACCATAATTATCAGTCGGGTCCAGGTTCTGGG 532
Query 539 TCGGGTAAAAAGGGTGTCAGGAGTAGAGAGTTGTATGAGTACgatgatgaagatgatgat 598
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 TCGGGTAAGAAGGGCGTCAGGAGTAGAGAGTTGTATGAGTACGATGATGAAGATGATGAT 592
Query 599 gaagatgacgatgGGGAGGA---TATCAGAGGCAGTGGAAAGAAAACAAGGAGAGATGGA 655
|| || ||||||| |||||| ||| ||||| |||||||||||||||||||||||||||
Sbjct 593 GACGACGACGATGAGGAGGACGATATGAGAGGAAGTGGAAAGAAAACAAGGAGAGATGGA 652
Query 656 CATGAAGT--T-TATGCTTCCGGAGAGAAGAAGAGAGAGGGAAGATCAAAGGTAGATCGT 712
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 CATGAAGTAGTATATGCTTCCGGAGAGAAGAAGAGAGAGGGAAGATCAAAGGTAGATCGT 712
Query 713 GAAGCTGATGATCAACAAGTTTTGCAGCTGGAGGAAAAAGATGTTGTATCATCTGTTGCC 772
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 713 GAAGCTGATGATCAACAATTTTTGCAGCTGGAGGAAAAAGATGTTGTATCGTCTGTTGCC 772
Query 773 ACTGTGCTTTCCGATTTGTGTGGTCCGGGAGACTGGATGCCTATGGAAAAACTTCACGCG 832
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 773 ACTGTGCTTTCCGATTTGTGTGGTCCGGGAGAGTGGATGCCTATGGAAAAACTTCATTCG 832
Query 833 GTGATATTAAAGGAGTATGGAAACGTATGGCATCACAGTCGAGTAAGAAGATACCTAACA 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 833 GTGATATTAAAGGAGTATGGAAACGTATGGCATCACAGTCGAGTAAGAAGATACCTATCA 892
Query 893 CAAGAAGACTGGGCTATCCCTGAAGCAAAGGGTAAACCATGGTACGGTTTGCTGATGCTG 952
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 893 CAAGAAGACTGGGCTATCCCTGAAGCAAAAGGTAAACCATGGTACGGTTTGCTGATGCTG 952
Query 953 CTGAGAAAATACCCGGTGCATTTCGTCATCAACACTAGATCAAAGGGAAGAGTTACCCTT 1012
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 953 CTGAGAAAATACCCGGAGCATTTCGTCATCAACACGAGATCAAAGGGAAGAGTTACCCTT 1012
Query 1013 CAATTCGTTTCCCTCGTTACCCTACTCACATGAGAACTTGACCTTAGTGACTCCGATTGT 1072
|||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||
Sbjct 1013 GAATTCGTTTCCCTCGTTACCCTACTCTCATGAGAACTTTACCTTAGTGACTCGGATTA- 1071
Query 1073 TTGAGATTTAAGAAGCTTTTCTCTCTTTTCTTTGTTACATATGTAAAATATTTTGGCACT 1132
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 1072 ---AGATTTAAGAAGCTTTTCTCTCTTTTCTTTGTTTCATATGTAAAATATTTTGGCATT 1128
Query 1133 GATTAGTAACACGCTGTGTCGTTTTTCTGCACC-AAAAACGCCAACTTCTTCTTGGTCGT 1191
||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
Sbjct 1129 GATTAGTAACACGCTGTGTCGTTTTTCTGCACCCAAAAACGCCAACTTCTT---GGTCCT 1185
Query 1192 TGCAGTTGAGGGATTTTGATTTTCT 1216
|||||||||| ||||||||||||||
Sbjct 1186 TGCAGTTGAGAGATTTTGATTTTCT 1210
> AT3G07260.1 | Symbols: | SMAD/FHA domain-containing protein
| chr3:2309704-2310788 FORWARD LENGTH=914
Length=914
Score = 830 bits (449), Expect = 0.0
Identities = 591/658 (90%), Gaps = 16/658 (2%)
Strand=Plus/Plus
Query 89 ATGGCTACGGCTGTTGGAGGCGGAAGCGATGTGGAGGTTGGATTTGCGAAGCTTCAAGGT 148
|||||||| || |||||| |||| |||||||| |||||||||||||||||||| ||||||
Sbjct 1 ATGGCTACAGCCGTTGGAAGCGGGAGCGATGTAGAGGTTGGATTTGCGAAGCTCCAAGGT 60
Query 149 GAGGATTTCGAGTACTATATGCAGTCGTACTCCATTATACTCGGCCGGAATTCTAAGAAA 208
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 61 GAGGATTTCGAGTACTATATGCAGTCTTACTCCATTATTCTCGGCCGGAATTCTAAGAAA 120
Query 209 GCGACCGTCGACGTTGATCTCTCATCCCTCGGCGGCGGGATGAACATTTCGCGCAACCAC 268
||||||||||||| || |||||||| |||||||| |||||||||||||| |||||||||
Sbjct 121 TCGACCGTCGACGTCGACCTCTCATCTCTCGGCGGTGGGATGAACATTTCTCGCAACCAC 180
Query 269 GCTCGGATCTTCTATGACTTCAC-ACGACGCCGCTTCTCTCTCGAGGTCCTTGGCAAAAA 327
||||||||||||||||||||||| | |||| ||||||||||||||||| |||||||||||
Sbjct 181 GCTCGGATCTTCTATGACTTCACTA-GACGACGCTTCTCTCTCGAGGTACTTGGCAAAAA 239
Query 328 TGGCTGCCTCGTTGAAGGTGTCCTCCATCTCCCTGGGAATCCTAACGTCAAGCTCGATTC 387
||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 240 TGGCTGCTTCGTTGAAGGTGTCCTCCATCTCCCTGGGAACCCCAACGTCAAGCTCGATTC 299
Query 388 CCAAGACCTTTTGCAGATTGGTGACAAAGAGTTTTACTTTCTCCTTCCGGTTCGGAGCAT 447
|| ||||||||||||||||||||||| ||||| ||||| || ||||||||| |||| ||
Sbjct 300 ACAGGACCTTTTGCAGATTGGTGACAAGGAGTTCTACTTCCTGCTTCCGGTTTGGAGTAT 359
Query 448 TTTAGGCGGGCCATTGGGACCTAGGCACCACGTCTCAGGGCAA-ACTAGTGTTGTTCCAT 506
||||||| ||||||||||| ||||||||||||| |||| || ||| ||||||||| |
Sbjct 360 CCTAGGCGGTCCATTGGGACCCAGGCACCACGTCTTAGGG-AAGGCTACTGTTGTTCCGT 418
Query 507 ACCATAATTATCAGTCAGGTCCGGGTTCTGGGTCGGGTAAAAAGGGTGTCAGGAGTAGAG 566
||||||||||||| || ||||| ||||| ||||||||||| || || ||| |||||||||
Sbjct 419 ACCATAATTATCATTCGGGTCCAGGTTCCGGGTCGGGTAAGAATGGCGTCCGGAGTAGAG 478
Query 567 AGTTGTATGAGTACgatgatgaagatgatgatgaagatgacgatgGGGAGGATATCAGAG 626
||||||||||||||||||||||||| || |||||||| | || || | ||||||||
Sbjct 479 AGTTGTATGAGTACGATGATGAAGACGACGATGAAGA-G--GA-GG--A---TATCAGAG 529
Query 627 GCAGTGGAAAGAAAACAAGGAGAGATGGACATGAAGT--T-TATGCTTCCGGAGAGAAGA 683
||||||||||||||||| |||||||||||||||||| | ||||| || ||||||||||
Sbjct 530 GCAGTGGAAAGAAAACATGGAGAGATGGACATGAAGGAGTATATGCCTCTGGAGAGAAGA 589
Query 684 AGAGAGAGGGAAGATCAAAGGTAGATCGTGAAGCTGATGATCAACAAGTTTTGCAGCT 741
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 590 AGAGAGAGGGAAGATCAAAGGCAGATCGTGAAGCTGATGATCAACAATTTTTGCAGCT 647
Score = 353 bits (191), Expect = 2e-96
Identities = 203/209 (97%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 835 GATATTAAAGGAGTATGGAAACGTATGGCATCACAGTCGAGTAAGAAGATACCTAACACA 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 676 GATATTAAAGGAGTATGGAAACGTATGGCATCACAGTCGAGTAAGAAGATACCTATCACA 735
Query 895 AGAAGACTGGGCTATCCCTGAAGCAAAGGGTAAACCATGGTACGGTTTGCTGATGCTGCT 954
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 736 AGAAGACTGGGCTATCCCTGAAGCAAAAGGTAAACCATGGTACGGTTTGCTGATGCTGCT 795
Query 955 GAGAAAATACCCGGTGCATTTCGTCATCAACACTAGATCAAAGGGAAGAGTTACCCTTCA 1014
|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 796 GAGAAAATACCCGGAGCATTTCGTCATCAACACGAGATCAAAGGGAAGAGTTACCCTTGA 855
Query 1015 ATTCGTTTCCCTCGTTACCCTACTCACAT 1043
||||||||||||||||||||||||| |||
Sbjct 856 ATTCGTTTCCCTCGTTACCCTACTCTCAT 884
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59738648550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5