BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478046
Length=1729
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07270.1 | Symbols: | GTP cyclohydrolase I | chr3:2315077-2... 2357 0.0
AT1G43171.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 130 5e-29
> AT3G07270.1 | Symbols: | GTP cyclohydrolase I | chr3:2315077-2317188
FORWARD LENGTH=1904
Length=1904
Score = 2357 bits (1276), Expect = 0.0
Identities = 1427/1501 (95%), Gaps = 5/1501 (0%)
Strand=Plus/Plus
Query 233 ATTTGTGATTTTATTGTTTTTGGGTACTTTCCCTTTGTGGA-TCGGATCTGGTTGGTGGC 291
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 307 ATTTGTGATTTTGTTGTTTTTGGGTACTTTCCCTTTGTGGATTCGGATCTGGTTGGTGGC 366
Query 292 -TTCTC-AATGGGCGCTTTAGATGAGGGACATTTGAATCTGGACCTTGACATCGGAATGA 349
|| || ||||||||| |||||||||||| |||||||||||| || ||||| |||||||
Sbjct 367 TTTGTCAAATGGGCGCATTAGATGAGGGATGTTTGAATCTGGAGCTCGACATTGGAATGA 426
Query 350 AAAATGGCTGCATTGACCTTGCTTTCGAGCTCCAACCTGAGACTTTAGCAATCCAAGACG 409
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 427 AAAATGGCTGCATTGAGCTTGCTTTCGAGCACCAACCTGAGACTTTAGCAATCCAAGACG 486
Query 410 CTGTCAAACTTCTCTTGCAAGCTCTTCACGAGGATGTCAATAGGGAAGGCATCAAAAAGA 469
||||||||||||||||||||| |||||| || ||||||||| ||||||||||||||||||
Sbjct 487 CTGTCAAACTTCTCTTGCAAGGTCTTCATGAAGATGTCAATCGGGAAGGCATCAAAAAGA 546
Query 470 CTCCTTTCCGTGTCGCCAAGGCTCTTCGTGAAGGGACCAGAGGTTATAAGCTAAAGGTGA 529
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 547 CTCCTTTCCGTGTCGCCAAGGCCCTTCGTGAAGGGACCAGAGGTTATAAGCAAAAGGTGA 606
Query 530 AGGACTATGTACAGAGTGCTCTGTTTCCAGAAGCAGGGTTGGATGAAGGAGTTGGGCAAG 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 AGGACTATGTACAGAGTGCTCTGTTTCCAGAAGCAGGGTTGGATGAAGGAGTTGGGCAAG 666
Query 590 CAGGAGGAGTGGGAGGACTTGTCGTTGTGAGAGATCTCGATCATTACTCTTACTGCGAGT 649
|||||||||| ||||||||||| ||||| ||||| |||||||||||||||||||| || |
Sbjct 667 CAGGAGGAGTCGGAGGACTTGTTGTTGTCAGAGACCTCGATCATTACTCTTACTGTGAAT 726
Query 650 GTTGCTTGCTTCCTTTTCATGTGAGGTGTCACATAGGTTATGTCCCATCGGGCCA-ACGA 708
||||||||||||||||||||| | |||||||||||||||||||||||||||||| | ||
Sbjct 727 CTTGCTTGCTTCCTTTTCATGTCAAGTGTCACATAGGTTATGTCCCATCGGGCCAGA-GA 785
Query 709 GTGTTAGGACTGAGCAAGTTCTCTCGAGTCACTGATGTTTTCGCCAAGCGGCTCCAAGAC 768
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 786 GTGTTAGGACTGAGCAAGTTCTCTAGAGTCACTGATGTTTTCGCCAAGCGGCTCCAAGAC 845
Query 769 CCTCAGCGTTTGGCTGATGATATTTGTTCTGCTCTCCAACATTGGGTCAAACCGGCTGGA 828
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 846 CCTCAGCGTTTGGCTGATGATATTTGTTCAGCTCTCCAACATTGGGTCAAACCAGCTGGA 905
Query 829 GTCGCTGTTGCTCTCGAATGCTCTCACATTCACTTCCCGAGTTTGGACTTGGACTCTCTG 888
|||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 906 GTCGCTGTTGTTCTTGAATGCTCTCACATTCACTTCCCCAGTTTGGACTTGGACTCTCTG 965
Query 889 CACTTGTCGAGCCACCATGGATTTGTGAAGCTACTGGTTTCCTCGGGCTCAGGAGTTTTC 948
||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 966 AACTTGTCTAGCCACCGTGGATTTGTGAAGCTACTGGTTTCCTCGGGGTCAGGAGTTTTC 1025
Query 949 GAGGATGAAAGCTCAAATCTTTGGGGTGAGTTTCAGAGTTTCTTGATGTTCAAAGGTGTA 1008
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1026 GAGGATGAAAGCTCGAATCTTTGGGGTGAATTTCAGAGTTTCTTGATGTTCAAAGGTGTA 1085
Query 1009 AAAACGCAAGCTTTGTGCAGAAATGGCAGCTCTGTGAAAGAGTGGTGCCCGAGCGTTAAA 1068
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1086 AAAACGCAAGCTTTGTGCAGAAATGGCAGCTCTGTGAAAGAGTGGTGCCCAAGCGTTAAA 1145
Query 1069 AGCTCGTATAACTTCTCACCTGAAGAAGACCCGGAAATGGTTTCCGCTGTTGTTTCAATC 1128
||||||| ||| || |||||||||| ||||||||||||||||| ||||||||||| |||
Sbjct 1146 AGCTCGTCTAAATTATCACCTGAAGTTGACCCGGAAATGGTTTCTGCTGTTGTTTCCATC 1205
Query 1129 CTGAAATCATTGGGAGAAGATCCGTTGAGGAAAGAACTCATTGCTACACCAACTCGATTC 1188
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1206 CTGAAATCACTGGGAGAAGATCCGTTGAGGAAAGAACTCATTGCTACACCAACTCGATTC 1265
Query 1189 CTCAAATGGATGTTGAACTTCCAAAGAACCAACCTCGAGATGAAGCTAAACGGCGTTAAC 1248
|||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||
Sbjct 1266 CTCAAATGGATGTTGAACTTCCAAAGAACCAACCTCGAAATGAAGCTAAACAGCTTTAAC 1325
Query 1249 TCTGCCAAAGTCAACGGCGAGGTCAAAGAGAAAAGGCTGCACTGTGAACTGAACATGCCC 1308
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1326 CCTGCCAAAGTCAATGGCGAGGTCAAAGAGAAAAGGCTGCACTGTGAGCTGAACATGCCC 1385
Query 1309 TTCTGGTCAATGTGTGAGCATCATTTGCTTCCTTTCTATGGTGTTGTTCATATTGGCTAC 1368
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1386 TTCTGGTCAATGTGTGAACATCATTTGCTTCCTTTCTATGGAGTTGTTCATATTGGCTAC 1445
Query 1369 TTTTGTGCTGAAGGATCCAACCACAATCCTATTGGAAGTTCACTCATGAAATCGATTGTA 1428
|||||||||||||||||||||| ||| ||| |||||||||||||||||||| ||||||||
Sbjct 1446 TTTTGTGCTGAAGGATCCAACCCCAACCCTGTTGGAAGTTCACTCATGAAAGCGATTGTA 1505
Query 1429 CACTTTTATGGGTTCAAGCTTCAAGTGCAAGAGAGAATGACTCGACAGATCGCTGAGACG 1488
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1506 CACTTTTATGGGTTCAAGCTTCAAGTGCAAGAGAGGATGACTCGACAGATCGCTGAAACG 1565
Query 1489 CTATCTCCTCTTGTTGGCGGGGATGTGATTGTTGTGGCAGAAGCTGGGCATACTTGTATG 1548
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1566 CTATCGCCTCTTGTTGGCGGGGATGTGATTGTTGTGGCGGAAGCTGGGCATACTTGTATG 1625
Query 1549 ATCTCTAGAGGAATTGAGAAGTTTGGAAGCAGCACTGCAACTATCGCAGTTTTGGGTCGG 1608
||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct 1626 ATCTCTAGAGGAATTGAGAAGTTTGGAAGCAGCACCGCGACAATCGCAGTTTTGGGTCGG 1685
Query 1609 TTTTCGAGTGACAATTCCGCAAGAGCGATGTTTCTAGACAAGATTCATACAACTAATGCC 1668
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1686 TTTTCGAGTGACAATTCCGCAAGAGCGATGTTTCTAGACAAGATCCATACAACTAATGCC 1745
Query 1669 TTGAAGACAGATTCAGGCTCTCCATTTTGAGATGGTTTCATGTCTATTTGTTGTCTTTTT 1728
||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1746 TTGAAGACAGAGTCAAGCTCTCCATTTTGAGATGGTTTCATGTCTGTTTGTTGTCTTTTT 1805
Query 1729 T 1729
|
Sbjct 1806 T 1806
Score = 206 bits (111), Expect = 8e-52
Identities = 164/187 (88%), Gaps = 14/187 (7%)
Strand=Plus/Plus
Query 1 TTTTACGAATCCACATATTCCTGGATCAACGGGAACCCTTCGTTTCTTTCTTCCCACCCT 60
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1 TTTTACGAATCCACATATTCCTGGATCAACGGGAACCCTTCGTTTCTTTC--CC-ACCCG 57
Query 61 CGTATTATCCTGTTTCTCAAATTTCTCAGCTTTCCGGGAAAATTCACCttttcttttttg 120
||| |||||| ||||||||||||||||| |||||||||||||||||| |||| ||||||
Sbjct 58 CGTGTTATCCCGTTTCTCAAATTTCTCATCTTTCCGGGAAAATTCAC-TTTT-TTTTTT- 114
Query 121 ttttCCTGGGAAGGGAAGATTCGTTGTGGTGAGAGTTTTTGTGGGCATCTTCAAATTTTC 180
| ||||||||| | ||||||||| || || |||| ||||||| ||||||||||||
Sbjct 115 T---CCTGGGAAG--A---TTCGTTGTGTTGTGAATTTTAGTGGGCACCTTCAAATTTTC 166
Query 181 GATTTTT 187
|||||||
Sbjct 167 GATTTTT 173
> AT1G43171.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT1G50220.1);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422;
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source:
NCBI BLink). | chr1:16269075-16270513 FORWARD LENGTH=1439
Length=1439
Score = 130 bits (70), Expect = 5e-29
Identities = 82/88 (93%), Gaps = 0/88 (0%)
Strand=Plus/Minus
Query 1326 GCATCATTTGCTTCCTTTCTATGGTGTTGTTCATATTGGCTACTTTTGTGCTGAAGGATC 1385
|||||||||| ||||||||| ||| ||| ||||||||||||||||||||||||||||||
Sbjct 88 GCATCATTTGGTTCCTTTCTGTGGAGTTAATCATATTGGCTACTTTTGTGCTGAAGGATC 29
Query 1386 CAACCACAATCCTATTGGAAGTTCACTC 1413
|||||||||| |||||||||||||||||
Sbjct 28 CAACCACAATTCTATTGGAAGTTCACTC 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85491528135
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5