BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478051
Length=1689
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07300.3 | Symbols: | NagB/RpiA/CoA transferase-like superf... 2588 0.0
> AT3G07300.3 | Symbols: | NagB/RpiA/CoA transferase-like superfamily
protein | chr3:2324617-2327625 REVERSE LENGTH=1714
Length=1714
Score = 2588 bits (1401), Expect = 0.0
Identities = 1620/1720 (94%), Gaps = 38/1720 (2%)
Strand=Plus/Plus
Query 1 GTCTCCTTTTATCAATTCCGTTTCTCTCTCGCCGGAATATTCTTGCTACTTCGTCTCCTT 60
||||||| ||||||||||||||||||||||||||||| ||| |||||||||| |||||||
Sbjct 2 GTCTCCTATTATCAATTCCGTTTCTCTCTCGCCGGAAGATTTTTGCTACTTCATCTCCTT 61
Query 61 ATCGTCCC-CCACCGTCAC--A-T-A-----TT--CA----C-C-A-TTTCTCGTTAATT 101
|||| ||| |||||||||| | | | || || | | | |||||||||||||
Sbjct 62 ATCGCCCCACCACCGTCACATATTCACTGGTTTCGCATTTTCTCAAGTTTCTCGTTAATT 121
Query 102 TCGGATAAGGAAGATGCCGGACGTCCAATCAACGGTGGTGGAATTTGTTAACAAGCTCAG 161
|||| ||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 122 TCGGTTAAAGAAGATGCCAGACGTTCAATCAACGGTGGTGGAATTTGTTAACAAGCTCAG 181
Query 162 AAAGCGTAAGATCGAGGGCTCACAGGCTACAGCCAAATGCACCGTAGAGCTACTTAGGTC 221
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 182 AAAGCGTAAGATTGAGGGCTCACAGGCTACAGCCAAATACACCGTAGAGCTACTTAGGTC 241
Query 222 AGTGATTTCGCATCAGCGGGTGCCTCACGCAAACCAAGCTGCTGCTCTTATCGATGCTGT 281
||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 242 AGTAATTTCGCATCAGCGGGTGCCTCACGCTAACCAAGCTGCCGCTCTTATCGATGCTGT 301
Query 282 GAAAGCCGTTGGTGAGCAATTGGTCGCTGCTAATCCTGTTGAGCTTGCGGTGGGAAATGT 341
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 302 GAAAGCTGTTGGTGAGCAATTGATCGCTGCTAATCCTGTTGAGCTTGCGGTGGGAAATGT 361
Query 342 AGTTAGACGGGTTTTGCATATTATAAGGGAGGAAGATCTTTCTCTCACTACAGCAGCTAT 401
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 362 AGTTAGACGGGTTTTGCATATTATAAGGGAGGAAGATCTTTCTCTAACTACAGCAGCTAT 421
Query 402 GGGTGGTTTGGACTTGTTGGATGCAAGTGATGATGATGATGTAGATAATTGCAAAGGAAT 461
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 422 GGGTGGTTTGGACTTGTTGGATGCAAGTGATGATGATGATGTAGACAATTGCAAAGGAAT 481
Query 462 TGGGTATCCTGCAATGTCTGCAGCAGTTGTTGCAGCTGCTGCTAGGAGTACGTTACGCCC 521
||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 482 TGGGTTTCCTGCAATGTCTGCAGCAGTTGTTGCAGCTGCAGCTAGGAGTACATTACGCCC 541
Query 522 TCCATCTTTGCAAACGCTTCTCGAGGGTACTCCTGAATCTGCAACTGTTCCATACACATC 581
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 542 TCCATCTTTGCAAACGCTTCTCGAGGGCACTCCTGAATCTGCAACTGTTCCATACACATC 601
Query 582 TTCATCCGGTGCTGATTCCGAAAGC---A--AAA-CTGCTGATAAAAGTTCATTAACTCG 635
|||||| |||||||||||||||||| | ||| |||| ||||||||||| ||||||||
Sbjct 602 TTCATCTGGTGCTGATTCCGAAAGCAAAAGTAAATCTGCCGATAAAAGTTCGTTAACTCG 661
Query 636 GAAGCTGAAGCATGATGTTATCGAAGGAGTGAATCAACTTATTCATGAGATTGCTGGTTG 695
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 662 GAAGCTGAAGCATGATGTTATCGAAGGAGTGAATCAACTTATTCAAGAGATTGCTGGTTG 721
Query 696 TCATGAGCAGATCGCTGAACAAGCTATAGAGCATATACATCAAAATGAGGTGATCCTAAC 755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 TCATGAGCAGATCGCTGAACAAGCTATAGAGCATATACATCAAAATGAGGTGATCCTAAC 781
Query 756 CCTGGGTAGCTCAAGAACAGTTCTTGAGTTTCTGTGTGCTGCCAAGGAGaaaaaaaGATC 815
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 782 CCTGGGTAGCTCAAGAACAGTGCTTGAGTTTCTGTGTGCTGCAAAGGAGAAAAAAAGATC 841
Query 816 TTTTCGTGTATTTGTCGCCGAAGGTGCTCCAAGGTATCAGGGCCATCTCTTAGCAAAAGA 875
||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 842 TTTTCGTGTATTTGTTGCCGAAGGTGCTCCAAGATATCAGGGCCATCTATTAGCAAAAGA 901
Query 876 ATTGGTAGCTAGAGGTTTGCAGACCACTGTGATCACTGATTCTGCAGTGTTTGCGATGAT 935
|||||||||||||||||||||||| ||||||||||| || |||||||||||||| |||||
Sbjct 902 ATTGGTAGCTAGAGGTTTGCAGACAACTGTGATCACCGACTCTGCAGTGTTTGCTATGAT 961
Query 936 ATCACGAGTGAATATGGTTATAATTGGAGCTCATGCAGTGATGGCTAATGGTGGGGTTAT 995
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 962 ATCTCGAGTGAATATGGTTATAATTGGAGCTCATGCAGTGATGGCTAATGGTGGAGTTAT 1021
Query 996 AGGACCTGTTGGTGTCAATATGGCTGCTCTTGCAGCACAAAAGCACGCAGTCCCATTTGT 1055
||| || ||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1022 AGGGCCAGTTGGTGTCAACATGGCTGCTCTTGCAGCACAAAAGCACGCAGTCCCATTCGT 1081
Query 1056 GGTTCTAGCCGGTAGTCACAAGTTGTGTCCACTCTACCCTCACAATCCGGAAGTATTACT 1115
|||||| || |||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1082 GGTTCTTGCTGGTAGTCACAAGTTGTGTCCCCTCTATCCTCACAATCCGGAAGTATTACT 1141
Query 1116 AAATGAGCTGAGATCTCCATCTGAACTGCTGGATTTTGGTGAATTCTCTGATTGCCTGGA 1175
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1142 AAATGAGCTGAGATCTCCATCTGAACTGTTGGATTTTGGTGAATTCTCTGATTGCCTGGA 1201
Query 1176 TTTTGGAGCGGGTTCCGGGTCTCTTCAAGTTGTCAACCCAACATTCGATTATGTCCCACC 1235
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1202 TTTTGGAGCAGGTTCCGGGTCTCTTCAAGTTGTCAACCCAACATTCGATTATGTCCCACC 1261
Query 1236 AAACCTTGTTAGTCTCTTTATAACGGACACGGGAGGACACAATCCATCCTACATGTACCG 1295
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1262 AAACCTTGTTAGTCTCTTTATAACAGACACGGGAGGACACAATCCATCCTACATGTACCG 1321
Query 1296 TCTTATTGCGGACTATTACTCTGCTGATGATTTGGTGATGTAGCGATAAAGGACTAGCTT 1355
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1322 TCTTATTGCGGACTACTACTCTGCTGATGATTTGGTGATGTAGCGATAAAGGACTAG-TT 1380
Query 1356 TT-GGTCACTTGGTGGGAACTATACAACAGTCGGTCGGATGATAGTCCGTCATTCACAAT 1414
|| |||||||||||||||||||||||||| || ||||||| | ||| ||||||||||||
Sbjct 1381 TTCGGTCACTTGGTGGGAACTATACAACATTCAGTCGGAT-A--GTCGGTCATTCACAAT 1437
Query 1415 TGAAGAATATATGTACATTGCACAAAAACAGTTGCTCAAGGATTGTGAAAGAGAAAGAGA 1474
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1438 TGAAGAATATATGTACATTGCACAAAAACAGTTGCTCAAGGATTGTGAATGAAAAAGAGA 1497
Query 1475 AACATCTTTGTGTCTGAAATTTGTCAGGCCAAGTTTATTTTTGCCGTGTCTTGGGTAATT 1534
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1498 AACATCTTAGTGTCTGAAATT-GTCAGGCCAAGTTTATTTTTGCCGTGTCTTGGGTAATT 1556
Query 1535 CCTTTAGCTCAGTCTCAATGGTGTCTATTGTTACTTGATA-TA--CTTTTCCT-CAACAC 1590
|||||||||||||||||||||||||||||||||||||||| || ||| || | ||||||
Sbjct 1557 CCTTTAGCTCAGTCTCAATGGTGTCTATTGTTACTTGATAGTATACTTCTCTTTCAACAC 1616
Query 1591 AA-GAATTTTCTTTCGTTGGCTTTTGTATTTGCAAATACGAGAATTACCACCGGAGGTGG 1649
|| | |||||||| |||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1617 AACGT-TTTTCTTTGGTTGGCTTTTGTATTTGCTAATACGAGAATTACCACTGGAGGTGG 1675
Query 1650 ACAGGACATCTTATTTTTAACTAACTAAAGTTTTGGGTGC 1689
||||||||||||||||| |||||| |||||||||||||||
Sbjct 1676 ACAGGACATCTTATTTT-AACTAATTAAAGTTTTGGGTGC 1714
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83483506335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5