BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478055
Length=2659
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07330.1 | Symbols: ATCSLC06, CSLC06, ATCSLC6, CSLC6 | Cellu... 4324 0.0
> AT3G07330.1 | Symbols: ATCSLC06, CSLC06, ATCSLC6, CSLC6 | Cellulose-synthase-like
C6 | chr3:2335612-2339100 REVERSE LENGTH=2716
Length=2716
Score = 4324 bits (2341), Expect = 0.0
Identities = 2561/2666 (96%), Gaps = 19/2666 (1%)
Strand=Plus/Plus
Query 1 AAGACAGTGGGACGAAAGACGACGTCATCTCTCTCTATTGTTAGTAAGTTTTAGCCCAAT 60
|||||| |||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 3 AAGACACTGGGACGAAAGACGACGTCA------TCTATTGTTAGTAAG-TTTAGCCCAAT 55
Query 61 CGTGTCCTCTCTGC-CTTTGTCTCCCAAATTCTCAGATCTAATCAGATCGA--TTCTCCT 117
||||| |||||||| | |||||||||||||||||||||||||||||||||| | ||||
Sbjct 56 CGTGTTCTCTCTGCGC-TTGTCTCCCAAATTCTCAGATCTAATCAGATCGACGAT-TCCT 113
Query 118 GATTTCATCAGCTTCGAGAGAGATTC-TCTTTTCCTTTC-TCGTTGAATGTCTCGCTCCC 175
|||||||||||||||||||||||| | |||||| ||| ||||||||||||||||||||
Sbjct 114 GATTTCATCAGCTTCGAGAGAGATCCTTCTTTT--GTTCTTCGTTGAATGTCTCGCTCCC 171
Query 176 AGAACGAGGAGTTTCAACAATGGTGGAACAAGCAACGAGATAGGAACAATCACGACGTTC 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 AGAACGAGGAGTTTCAACAATGGTGGAACAAGCAACGAGATAGGAACAATCACGACGTTC 231
Query 236 TTTACACCGGCGACGATGAAGCATTCCTCACCGTTGAAATCCGTACTCCGGCCACCGTTG 295
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 TTTACGCCGGCGACGATGAAGCATTCCTCACCGTTGAAATCCGTACTCCGGCCACCGTTG 291
Query 296 ACCCGGATAAGGATCGGATCCGGACCCGTACCGCTCGTCAGCTCTCTCGTCTCTACCTCC 355
|||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 292 ACCCTGATAAGGATCGGATCCGGACTCGTACCGTTCGTCAGCTCTCTCGTCTCTACCTCC 351
Query 356 TCAAGTTCAAGCAACTCGCATCTTCCTTCGTCTGGATCGGTAACTCTTTCCTTTACCTTG 415
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 352 TCAAGTTCAAGCAACTCGCATCTTCCTTCCTCTGGATCGGTAACTCTTTCCTTTACCTTG 411
Query 416 TTCGCACCGCCAATCGCCGCATTGCCAACGATAATCCTCCATCTGTCTCCTCCTCCGCTA 475
||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct 412 TTCGCACCGCCAATCGCCGCATTGCCAACGATAATCCTCCATCCGTGTCTTCCTCCGCTA 471
Query 476 GATTGTACCGTCTAATCAAGGGATTTCTCGTTGTTGTTGTGCTTCTTCTCTGTTTCGAGC 535
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 GATTGTACCGTTTAATCAAGGGATTTCTCGTTGTTGTTGTGCTTCTTCTCTGTTTCGAGC 531
Query 536 TTGCCGCTTATTTCAAGGGATGGCACTTCACACCTCCCTCTGTCGCCTCCGCCGAGGTCG 595
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 532 TTGCCGCTTATTTCAAGGGATGGCACTTCACACCTCCCTCTGTTGCCTCCGCCGAGGTCG 591
Query 596 CCGTGGAGGTGGTTTACGCTTGGTGGTTGGAGATCAGGGCGTCTTATCTCGCGCCGCCGC 655
| |||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 592 CTGTGGAGGTGGTTTACGCTTGGTGGTTGGAGATCAGGGCGTCTTACCTTGCGCCACCGC 651
Query 656 TTCAGAGCTTGACCAATGTATGTATAGTTCTCTTCTTGATTCAATCGGTTGACCGTCTGG 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 TTCAGAGCTTGACCAATGTATGTATAGTTCTCTTCTTGATTCAATCGGTTGACCGTCTGG 711
Query 716 TGCTTGTGCTTGGATGCTTCTGGATCAAGCTTCGCCGCATTAAGCCTGTTGCATCTATGG 775
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 712 TGCTTGTGCTTGGATGCTTCTGGATCAAGCTCCGCCGTATTAAGCCTGTTGCATCTATGG 771
Query 776 CGTACCCGACTAAATTGGTTGGAGAGGGAGTTAGATTGGAAGATTATCCAATGGTGATTG 835
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 AGTACCCGACTAAATTGGTTGGAGAGGGAGTTAGATTGGAAGATTATCCAATGGTGATTG 831
Query 836 TTCAGATTCCAATGTGCAATGAAAAGGAGGTTTACCAACAATCTATTGGAGCTGTGTGTA 895
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 832 TTCAGATTCCTATGTGCAATGAAAAGGAGGTTTACCAACAATCTATAGGAGCTGTGTGTA 891
Query 896 TGCTTGACTGGCCAAGGGAGAGAATGCTAGTTCAGGTTCTTGATGACTCCAGTGAGTTAG 955
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
Sbjct 892 TGCTTGACTGGCCAAGGGAAAGAATGCTAGTTCAGGTTCTTGATGACTCCAGTGAATTGG 951
Query 956 ATGTTCAGCAGCTTATAAAAGCTGAAGTACAGAAATGGCAACAAAGGGGTGTAAGGATAG 1015
|||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||
Sbjct 952 ATGTTCAGCAGCTTATAAAAGCGGAAGTACAAAAATGGCAACAAAGGGGTGTTCGGATAG 1011
Query 1016 TGTATAGACACCGTCTCATACGTACTGGTTACAAGGCTGGAAACCTTAAAGCTGCAATGA 1075
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 TGTATAGACATCGTCTCATACGTACTGGTTACAAGGCTGGAAACCTTAAAGCTGCAATGA 1071
Query 1076 ACTGTGAATACGTCAAAGACTACGAATTTGTTGCCATATTTGATGCGGATTTCCAGCCAC 1135
|||||||||| |||||||||||||| ||||| |||||||||||||| |||||||||||||
Sbjct 1072 ACTGTGAATATGTCAAAGACTACGAGTTTGTCGCCATATTTGATGCAGATTTCCAGCCAC 1131
Query 1136 CAGCGGATTTCTTGAAGAAAACTGTGCCTCACTTTAAGGGTAATGATGAATTAGCCTTGG 1195
| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1132 CTGCGGATTTCTTGAAGAAAACTGTGCCTCATTTTAAGGGTAATGAAGAATTAGCCTTGG 1191
Query 1196 TCCAAACACGGTGGGCTTTTGTGAACAAAGACGAAAACTTGCTTACAAGACTCCAGAACA 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 TCCAAACACGGTGGGCTTTTGTGAACAAAGACGAAAACTTGCTTACAAGACTCCAGAACA 1251
Query 1256 TAAATTTGTCTTTCCACTTTGAAGTTGAACAGCAGGTTAATGGTGTCTTTATTAACTTCT 1315
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1252 TAAATTTGTCTTTCCACTTTGAAGTTGAACAGCAGGTCAATGGTGTTTTTATTAACTTCT 1311
Query 1316 TTGGCTTTAATGGAACTGCTGGTGTTTGGAGAATCAAAGCCCTCGAGGACTGCGGGGGAT 1375
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1312 TTGGCTTTAATGGAACTGCTGGTGTTTGGAGAATCAAAGCCCTCGAGGATTGCGGGGGAT 1371
Query 1376 GGTTGGAGCGAACAACTGTTGAAGACATGGATATTGCCGTTCGTGCGCATCTTTGCGGAT 1435
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1372 GGTTGGAGCGAACAACTGTTGAGGACATGGATATTGCCGTTCGTGCGCATCTTTGTGGAT 1431
Query 1436 GGAAGTTCATTTATCTGAATGATGTAAAGTGTCTCTGTGAACTTCCGGAGTCCTATGAGG 1495
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1432 GGAAGTTCATTTATCTGAATGATGTTAAGTGTCTCTGTGAACTTCCGGAGTCCTATGAGG 1491
Query 1496 CATACAAAAAACAGCAATACCGTTGGCATTCGGGTCCAATGCAATTGTTCCGTTTGTGCT 1555
|||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 1492 CATATAAAAAACAGCAATACCGCTGGCATTCGGGTCCAATGCAACTGTTCCGTTTGTGCT 1551
Query 1556 TCTTTGACATTCTTCGGTCAAAGGTGAGTGTTGCCAAGAAAGCAAATATGATATTTCTCT 1615
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1552 TCTTTGACATTCTTCGGTCAAAGGTGAGTGCTGCCAAGAAAGCAAATATGATATTTCTCT 1611
Query 1616 TCTTCTTGCTACGGAAGCTTATCTTGCCATTCTACTCATTCACGCTCTTCTGCGTCATTC 1675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1612 TCTTCTTGCTACGGAAGCTTATCTTGCCATTCTACTCATTCACGCTCTTCTGCGTCATTC 1671
Query 1676 TTCCATTAACAATGTTCTTCCCAGAAGCTAACTTACCATCTTGGGTTGTTTGCTACATCC 1735
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1672 TTCCATTAACGATGTTCTTCCCAGAGGCTAACTTACCATCTTGGGTTGTTTGCTATATCC 1731
Query 1736 CTGGGATCATGTCCATCTTAAACATCATCCCAGCCCCAAGATCCTTCCCTTTCATAGTTC 1795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1732 CTGGGATCATGTCCATCTTAAACATCATCCCAGCCCCAAGATCCTTCCCTTTCATAGTTC 1791
Query 1796 CATATCTCCTTTTCGAAAACACCATGTCAGTTACCAAATTTGGAGCCATGATCTCTGGTT 1855
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1792 CGTATCTCCTTTTCGAAAACACCATGTCAGTTACCAAATTTGGAGCCATGATCTCTGGTT 1851
Query 1856 TGTTCAAGTTTGGA-AGTTCTTACGAGTGGGTAGTCACCAAAAAGCTTGGGAGATCCTCT 1914
|||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1852 TGTTCAAGTTTG-ATAGTTCTTACGAGTGGGTAGTCACCAAAAAGCTAGGGAGATCCTCT 1910
Query 1915 GAGGCTGATCTGGTTGCATACGCAGAGTCAGGTTCTCTGGCCGAGTCCACAACCATCCAA 1974
||||| ||||||||||||||||||||||| || ||| ||| ||||||||||||||||||
Sbjct 1911 GAGGCGGATCTGGTTGCATACGCAGAGTCCGGCTCTTTGGTTGAGTCCACAACCATCCAA 1970
Query 1975 AGATCATCCTCTGATTCAGGTCTGACTGAGCTTAGCAAACTAGGAGCAGCAAAGAAAGCT 2034
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1971 CGATCATCCTCTGATTCAGGTCTGACCGAGCTTAGCAAACTAGGAGCAGCAAAGAAAGCT 2030
Query 2035 GGCACGACCAAAAGAAACCGTCTGTACAGAACAGAGATCGCACTTGCGTTTATCCTCTTG 2094
|||| |||||||||||||||||||||||||| || |||||||| |||||||||||||||
Sbjct 2031 GGCAAAACCAAAAGAAACCGTCTGTACAGAACGGAAATCGCACTCGCGTTTATCCTCTTG 2090
Query 2095 GCAGCTTCGGTGAGAAGCTTGTTGTCTGCGCAAGGGATCCATTTCTACTTCCTCTTGTTC 2154
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2091 GCAGCCTCGGTGAGAAGCTTGTTGTCTGCGCAAGGGATCCATTTCTACTTCCTCTTGTTC 2150
Query 2155 CAAGGAATCACTTTCGTTGTTGTCGGTCTAGATTTGATCGGGGAACAGGTCAGTTAGTTT 2214
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2151 CAAGGAATCACGTTCGTTATTGTCGGTCTAGATTTGATCGGGGAACAGGTCAGTTAGTTT 2210
Query 2215 ATATAACCTTTTTTGTCAGTTTAAAACTACATTGAACCATACCACCGGAAGAATGAACAA 2274
|||||||| ||||| ||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 2211 ATATAACCCTTTTTCTCAGTTTAAAACTACATTGAACCATACCACCAGAAGAACGAACAA 2270
Query 2275 GACCCAAAGACCAAGTCAGGAAGGAACGAACCAACTCACTCGCAGGTCTTTTCGTTACAG 2334
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2271 GACCCAAAGATCAAGTCAGGAAGGAACGAACCAACTCACTCGCAGGTCTTTTCGTTACAG 2330
Query 2335 ATAGATACATAAAAACAATTCATTTAAAGTTTCTGTCTTGGGAACATGATTCTATACTCT 2394
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2331 ATAGATACATAAAAACAATTCATTTAAAGTTTCTGTCTTGGGAACATGATTTTATACTCT 2390
Query 2395 ACTTGGGTTGGTTTAGATTCTTCCtttttttACGGATAGTATTAGAGAATGGCAGAAAGA 2454
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2391 ACTTGGGTTGGTTTAGATTCTTCCTTTTTTTACGGATAGTATTAGAGAATGGCAGAAACA 2450
Query 2455 GCCGTCGAAGAGGATTCCAAAGACTTGCCTTCCTGTCTTTGTTGTGGTATTAAGCCAAAA 2514
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2451 ACCGTCGGAGAGGATTCCAAAGACTTGCCTACCTGTCTTTGTTGTGGTATTAAGCCAAAC 2510
Query 2515 CTTGGtttttttGTTGTGCAAAAATTGTTGTTAGGTTGTTCGTTTTT-GTTTCGGATGAT 2573
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 2511 CTTGGTTTTTTTGTTGTGCAAAAATTGTTGTTAGGTTGTTGGTTTTTTGTTTCGGATGAT 2570
Query 2574 GTGGCAGAAACATCTTTTAAGATTTGCTCTAATGCCACTCTCAAATTCTTTGTTGTTGTT 2633
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2571 GTGGCAGAAACATATTTTAAGCTTTGCTCTAATGCCACTCTCAAATTCTTTGTTGTTGTT 2630
Query 2634 GTTTCTCTCTTATGGGTTCATTTATT 2659
||||||||| || |||||||||||||
Sbjct 2631 GTTTCTCTCCTAAGGGTTCATTTATT 2656
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 132039393976
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5