BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478057
Length=1276
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07350.1 | Symbols: | Protein of unknown function (DUF506) ... 1683 0.0
> AT3G07350.1 | Symbols: | Protein of unknown function (DUF506)
| chr3:2347468-2348791 FORWARD LENGTH=1324
Length=1324
Score = 1683 bits (911), Expect = 0.0
Identities = 1184/1309 (90%), Gaps = 46/1309 (4%)
Strand=Plus/Plus
Query 1 ATAAC-TATAGCTTCTCTGCGAATATTCGGAGCCCAACTCCTCTCTCTTCACGCATTTTT 59
||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 29 ATAACTTA-AGCTTCTCTTCGAATATTCGGAGCCCAACTCCTCTCTCTTCACGCATTTCT 87
Query 60 CGTTGTCAAAAAGAAAGTTCTCTCCTTTTATAAAAACCCATCTCCTCCTCCTCGCTATCT 119
|||||||||| | ||||||||||||||||||||| |||||||||| |||||| || |||
Sbjct 88 CGTTGTCAAAGACAAAGTTCTCTCCTTTTATAAACACCCATCTCCACCTCCT--CTCTCT 145
Query 120 TATTCAAACTTCTCTGAGAAAATTC--G---A--G-----------T-TA-A---TCTGA 156
||||||||||||| ||||||||||| | | | | || | |||||
Sbjct 146 TATTCAAACTTCTTTGAGAAAATTCGAGCTAAGTGTTTTTATAATATATACATTCTCTGA 205
Query 157 TATGGGTTTCTCTAGAGCTAAACGTGTCACTGATCCACTCGCTGACGAGGTTAGGGCTCG 216
|||||||||||||||||| |||||||||||||||||||| || || ||||||||||||||
Sbjct 206 TATGGGTTTCTCTAGAGCAAAACGTGTCACTGATCCACTTGCAGAAGAGGTTAGGGCTCG 265
Query 217 TCTCGTTGGATGTAGCTTTAGCAGCGGCAGCGAACATACCGGCGACGGAACCGAAGACTA 276
|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 266 TCTCGTTGGATGCAGCTTTAGCAGCGGCAGCGAACATACCGGCGACGGAATTGAAGACTA 325
Query 277 CGAAGACGACGACTCACCTTGTCTCTCCGATCTCGTACAAGGCTTCTTGGAAGATGAAGT 336
||||||||||||||| ||||||||||| ||||| |||||||| |||||||||||||||||
Sbjct 326 CGAAGACGACGACTCGCCTTGTCTCTCTGATCTAGTACAAGGGTTCTTGGAAGATGAAGT 385
Query 337 TGAGACCGTTGTTGATGAGTCACGCTGGTGTGATCAAGACTCCGGTTCCGACTCGGATTC 396
||| || |||| |||||||||| |||||||||||||||| || |||||||||||||||||
Sbjct 386 TGATACAGTTGATGATGAGTCATGCTGGTGTGATCAAGATTCTGGTTCCGACTCGGATTC 445
Query 397 TGACTCGGAACTAGTG-GAGCTCCCTGACTTTGCCGACGATATTGCCAAACTTCTGAGGA 455
|||||||||||| | | |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 446 TGACTCGGAACTTG-GCGAGCTCCCTGACTTTGCCGACGATATCGCCAAGCTTCTGAGGA 504
Query 456 ACTCTCTGAGGGAAGATTCATACGGACGAACGATGCTGGTACACGTGGCGAGAGCGATGG 515
||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 505 ACTCTCTCAGGGAAGATTCATACGGACGAACGGTGCTGGTACATGTGGCGAGAGCGATGG 564
Query 516 AAGTGTTGTCGTCTCTTGAATCTCAGCACGAACAACGTGCCGTTTTCCAGCGTAAGGTCA 575
|| ||||||||||||| | |||||||| |||||| |||||||||||||||||||||||||
Sbjct 565 AAATGTTGTCGTCTCTCGGATCTCAGCCCGAACAGCGTGCCGTTTTCCAGCGTAAGGTCA 624
Query 576 TGTCTCTTCTAAGAGAACTCGGCCACAATGCGGCCATCTGCAAAACTAAATGGAAATCCT 635
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 625 TGTCTCTTCTTAGAGAACTCGGCCACAATGCGGCCATCTGCAAAACTAAATGGAAATCCT 684
Query 636 CCGGCGGACTCACCGCCGGAAACCACGAATTCATCGACGTCATGCATACACCTTCCGCCT 695
||||||||||||||||||| ||||| || |||||||||||| || |||||||||||||||
Sbjct 685 CCGGCGGACTCACCGCCGGTAACCATGAGTTCATCGACGTCGTGTATACACCTTCCGCCT 744
Query 696 CGTCTCAGCCCGTCCGTTACATCGTCGATTTAGATTTCGCGTCGCGGTTTCAAATCGCGA 755
|||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 745 CGTCTCAGTCCGTCCGTTTCATCGTCGATTTAGATTTCTCGTCGCGGTTTCAAATCGCGA 804
Query 756 GGCCAACTTCACAGTACGCGCGTGTGCTTCAATCGCTTCCGGCGGTTTTCGTCGGAAGAG 815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 805 GGCCAACTTCACAGTACGCGCGTGTGCTTCAATCGCTTCCGGCGGTTTTCGTCGGAA-AG 863
Query 816 GGG-ACGATCTGAAGCGGATCTTGCGGCTCGTATGTGACGCGGCGAGGATTTCTCTTAGA 874
||| | |||||||||||||||||||| ||||| |||||||| |||||||||||||||||
Sbjct 864 GGGGATGATCTGAAGCGGATCTTGCGTCTCGTGTGTGACGCCGCGAGGATTTCTCTTAGG 923
Query 875 AACCGCGGCCTCACGCTACCGCCGTGGAGGAAGAATCGTTATATGCAAACGCGGTGGCTT 934
|||||||| || ||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 924 AACCGCGGGCTGACGCTTCCGCCGTGGAGGAAGAATCGTTATATGCAGACGCGGTGGCTT 983
Query 935 GGTCCTTACAAACGCACTACCAACTTAACGCCGTCATCTACCGCCGTTA-ACACCGTCAT 993
||||||||||||||||| |||||||||||||||||| || ||| || | ||||||||||
Sbjct 984 GGTCCTTACAAACGCACCACCAACTTAACGCCGTCAACTTCCGGTGT-AGACACCGTCAT 1042
Query 994 GTGTCGTGCCATCGGTTTCGATAATGTTGTCGGTGGCCGTCTATTTGTGCGAACCCGATA 1053
|||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct 1043 GTGTCGTGCCATCGGTTTCGATAATGCCGTCGGAGGCCGTCTATTTGTGCGAACACGATA 1102
Query 1054 AAGCC-AGACCAAAAAGGCCACGTGTCATTTTTAACTTGGATTTTTTCAAAATACATCCT 1112
|| | ||||||||||| ||||||||||||||||||||| |||||||| | |||| | ||
Sbjct 1103 AAAACTAGACCAAAAAGACCACGTGTCATTTTTAACTTG-ATTTTTTCCATATACGTTCT 1161
Query 1113 AGAGAATAATAGTATAATTCATTATTTAGAAATTCTCGTTTGAAATTAT-A---Taaaaa 1168
||||||||||| || | ||||||||| | ||||| ||||||||||| | ||||||
Sbjct 1162 AGAGAATAATA--AT--T-CATTATTTACAT-TTCTCATTTGAAATTATTAAAATAAAAA 1215
Query 1169 aatgtgatt-caaaaacaaacaaattaaagccaagaaaaaTCCAGATTTTACGATGAAGA 1227
||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1216 AATCTGATAACAAAAACAAACAAATTAAAGCCAAGAAAAATCCAGATTTTACGATGAAGA 1275
Query 1228 AACAATTCTATGCGGAAAATGAACATCGTCCAGGAAACACACAAGGTTC 1276
|| ||||||| ||||||||||||||||||| || |||||||||||||||
Sbjct 1276 AAGAATTCTACGCGGAAAATGAACATCGTCAAGAAAACACACAAGGTTC 1324
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62750681250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5