BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478058
Length=1115
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07370.1 | Symbols: ATCHIP, CHIP | carboxyl terminus of HSC7... 1493 0.0
> AT3G07370.1 | Symbols: ATCHIP, CHIP | carboxyl terminus of HSC70-interacting
protein | chr3:2358083-2360549 REVERSE LENGTH=1325
Length=1325
Score = 1493 bits (808), Expect = 0.0
Identities = 892/933 (96%), Gaps = 3/933 (0%)
Strand=Plus/Plus
Query 90 AGACTATGGTTACAGGCGTGGCCTCCCCCATGGCGGAGCGGTTAAAGGAAGACGGAAACA 149
||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 245 AGA-TATGGTTACAGGCGTGGCTTCCGCCATGGCGGAGCGGTTAAAGGAAGACGGAAACA 303
Query 150 ATTGCTTTAAGAAAGAACGTTTTGGTGCTGCCATTGATGCTTATACCGAGGCAATAGCCT 209
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 304 ATTGCTTTAAGAAAGAACGTTTTGGTGCTGCCATTGATGCTTATACCGAGGCAATAGCTT 363
Query 210 TGTCTCCAAATGTTCCTGCTTATTGGACAAATCGAGCACTTTGCCACATGAAACGAAAGG 269
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 364 TGTCTCCAAATGTTCCTGCTTATTGGACCAATCGAGCACTTTGCCACATGAAGCGAAAGG 423
Query 270 ATTGGACTAAGGTTGAAGAGGATTGTCGCAAAGCTATTCAGCTTGTCCACAATTCCGTCA 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 ATTGGACTAAGGTTGAAGAGGATTGTCGCAAAGCTATTCAGCTTGTCCACAATTCCGTCA 483
Query 330 AGGCCCACTACATGCTAGGACTTGCATTATTGCAGAAGAAAGAATATACTGATGGAGTCA 389
|||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 484 AGGCACACTACATGCTAGGACTTGCATTATTGCAGAAGAAAGAATTTACTAATGGAGTCA 543
Query 390 AAGAGTTGCAAAGGGCTTTAGATCTTGGAAGAAGCTCGAATCCAACAGGATATATGGTTG 449
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 544 AAGAATTGCAAAGGGCTTTAGATCTTGGAAGATGCTCGAATCCAACAGGATATATGGTAG 603
Query 450 AGGAAATATGGGAAGAGCTTTCTAAAGCAAAATACATGGAGTGGGAACTGGTTTCTGCAA 509
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 AAGAAATATGGGAAGAGCTTTCTAAAGCAAAATACATGGAGTGGGAACTGGTTTCTGCAA 663
Query 510 GGCGCTCATGGGAACTGAGTAGTTTGAAGGAAACTTGTGAGGCTGCTCTTAATCAACAAT 569
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 664 TGCGGTCATGGGAACTGAATAGTTTGAAGGAAACTTGTGAGGCTGCTCTTAATCAACAAC 723
Query 570 GTGCTTTAGATATGTCTCGAACAGAAGAGTCCTCAGACGAAGCCTATATTGCCCATACCG 629
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
Sbjct 724 GTGCTTTAGATATGTCTCGAACAGAAGAGTCCTCAGACGAAGCATATACTGCCCATACTG 783
Query 630 AGCGTTTAAAAGCTCTTGAACGAGTGTTTGAGAAAGCTGCAGAAGAAGATAAACCAACTG 689
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 784 AGCGTTTGAAAGCTCTTGAACGAGTGTTTAAGAAAGCTGCAGAAGAAGATAAACCAACTG 843
Query 690 AGGTGCCAGGTTATTTGTGTTGCAATATAACTCTTGAGATTTTCCGAGATCCTGTAATAT 749
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 844 AGGTGCCAGATTATTTATGTTGCAATATAACTCTTGAGATTTTCCGAGATCCTGTAATTT 903
Query 750 CTCCAAGTGGGGTTACATATGAAAGAGCAGCAATCCTTGAACATCTCAAGAAGGTGGGGA 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 904 CTCCAAGTGGGGTTACATATGAAAGAGCAGCAATCCTTGAACATCTCAAGAAGGTGGGGA 963
Query 810 AGTTTGATCCGATAACGCGTGAAAAAATCGACCCGTCCAAGCTCGTCCCAAATCTGGCTA 869
|||||||||| ||||| |||||||||||||||||| | || ||||| |||||||||||||
Sbjct 964 AGTTTGATCCTATAACTCGTGAAAAAATCGACCCGGCTAATCTCGTTCCAAATCTGGCTA 1023
Query 870 TCAAAGAGGCAGTGGCTGCATATCTAGAAAAACACGTTTGGGCTTACAAGATGGGTTGTT 929
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1024 TCAAAGAGGCAGTGGCAGCATATCTAGAAAAACACGTCTGGGCTTACAAGATGGGTTGTT 1083
Query 930 GAT-GCAAATGGGGATTAACATAAACACAATGAAGCGGATGTGAAATTGAGGTTAACTAG 988
||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1084 GATCG-AAATGGGGATTAACATAAACACAATGAAGCGGATGAGAAATTGAGGTTAACTAC 1142
Query 989 TAATGTGAGTGAACAAAACAGATGGGTGCGTTT 1021
| | |||| |||||||||||||||||||||||
Sbjct 1143 TCAGGTGACCGAACAAAACAGATGGGTGCGTTT 1175
Score = 156 bits (84), Expect = 5e-37
Identities = 96/101 (95%), Gaps = 3/101 (3%)
Strand=Plus/Plus
Query 1018 GTT-TTGCCGATGTTTTCAGTGTAAGATTCTCTACCCTGTGTATATAT-ACAATGTTTTT 1075
||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1198 GTTGTTGCCGATGTTTTCAGTGTAAGATTCTCTGCCCTGTGTATATATTACAATGTTTTT 1257
Query 1076 T-GTGCACTCTGCACACATTGGCCATATGGCTTAGCCTATA 1115
| |||||||||| ||||||||||||||||||||||||||||
Sbjct 1258 TTGTGCACTCTGTACACATTGGCCATATGGCTTAGCCTATA 1298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54668393505
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5