BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478059
Length=963
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07390.1 | Symbols: AIR12 | auxin-responsive family protein ... 950 0.0
> AT3G07390.1 | Symbols: AIR12 | auxin-responsive family protein
| chr3:2365301-2366496 FORWARD LENGTH=1196
Length=1196
Score = 950 bits (514), Expect = 0.0
Identities = 857/1013 (85%), Gaps = 62/1013 (6%)
Strand=Plus/Plus
Query 1 TCTATATAAACATCTCATGTCCATGTGTCTTAATAT-CTTCTTATCAAACACC--A-CAC 56
|||||||||||||| ||||||| |||||||||| || | |||||||||||||| | |||
Sbjct 136 TCTATATAAACATCACATGTCCCTGTGTCTTAAAATACCTCTTATCAAACACCAAACCAC 195
Query 57 A--ACACCAG-A---A--CATGG------CTTCTTCTTCTCTTCTAATCCTAGCCGTTGC 102
| | | ||| | | ||||| |||||||||||||||||||||||||||||||
Sbjct 196 ACCAGAACAGAACTCAGCCATGGCTTCTTCTTCTTCTTCTCTTCTAATCCTAGCCGTTGC 255
Query 103 TTGTTTCGTCTCGCTAATCTCACCGGCGATTTCACAGCAGACTTGCTC-TACGCAGAACC 161
|||||||||||||||||||||||||||||||||||| ||| ||||| | | ||||||
Sbjct 256 TTGTTTCGTCTCGCTAATCTCACCGGCGATTTCACAACAGGCTTGCAAAT-CACAGAACT 314
Query 162 TAAACTCCGCTGGTCCGTACGATAGTTGCCTGGACCTTCCCGTACTCAATTCCTACCTCC 221
| |||||||| ||||||| |||||||||| |||||||| |||||||||||||||||||
Sbjct 315 TGAACTCCGCCGGTCCGTTCGATAGTTGCGAAGACCTTCCGGTACTCAATTCCTACCTCC 374
Query 222 ATTACACATACGATTCCTCAAACTCGTCTCTCTCGGTTGCTTTCGTCGCCACTCCATCTC 281
||||||| ||| |||||||||| || |||||||| || ||||||||||||||||||||||
Sbjct 375 ATTACACCTACAATTCCTCAAATTCATCTCTCTCCGTCGCTTTCGTCGCCACTCCATCTC 434
Query 282 AAACCAACAATGGCTGGGTCGCTTGGGCTATCAATCCTACGGGGACTAAGATGGCCGGTT 341
|| ||||| ||||||||||||||||||||| || |||||||||||||||||||| ||||
Sbjct 435 AAGCCAACGGTGGCTGGGTCGCTTGGGCTATTAACCCTACGGGGACTAAGATGGCTGGTT 494
Query 342 CTCAGGCCTTCCTCGCTTACAGATCTAACGGCGGTGCTGCTCCCGTCGTCAGGACGTACA 401
|||| |||||||||||||||||||| ||| ||||| ||||| ||||| | ||||||||
Sbjct 495 CTCAAGCCTTCCTCGCTTACAGATCCGGCGGTGGTGCGGCTCCGGTCGTGAAGACGTACA 554
Query 402 ACATAAGCGGCTACAG---TCTCGACGAAAGCGCTACGAGACTTTCCTTCGAGTTCTGGA 458
|||| ||| ||||||| ||||| |||| | | || | |||| | || || || ||||
Sbjct 555 ACATTAGCAGCTACAGCAGTCTCGTCGAA-G-G-TA--A-ACTTGCTTTTGATTTTTGGA 608
Query 459 ATCTACGCGCCGAGTCGTTGAGCGGCGGCAGGATCGCGATTTTCACCACGGTTAAGGTCC 518
||||||||||||||||||| |||||||| |||||||| |||||||| ||||||||||| |
Sbjct 609 ATCTACGCGCCGAGTCGTTAAGCGGCGGTAGGATCGCCATTTTCACGACGGTTAAGGTTC 668
Query 519 CGGCGGGAGCCGATAGTGTGAATCAGGTGTGGCAGATCGGCGGGAATGTCACCAACGGTC 578
|||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||||||
Sbjct 669 CGGCGGGAGCTGATAGTGTGAATCAGGTATGGCAGATCGGCGGCAATGTTACCAACGGTC 728
Query 579 GTCCCGGAATACATCCTTTCACTCCA-AGTAATTTGGGCTCCCACCGCGTCCTGAGATTT 637
||||||| ||||||||||| ||| | |||||||||||||||||| || |||| |||
Sbjct 729 GTCCCGGTGTACATCCTTTCGGTCCTGA-TAATTTGGGCTCCCACCGTGTGTTGAG-TTT 786
Query 638 -ACCGCCGA--C-GCACCGGGCTCTGC-CC--CG-----A-C-GC-C-GAC-C-----AC 675
|| | || | |||||||||||||| || || | | || | | | | ||
Sbjct 787 CACAGAAGATGCAGCACCGGGCTCTGCTCCTTCGCCGGGATCTGCTCCGGCGCCGGGCAC 846
Query 676 CGGTGGCTCCACTACCCCAGGG-CAAGCGGCGGGAGGTCCAGGGAACGCGGGGTCTTTGA 734
| ||||||| ||||||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct 847 CAGTGGCTCGACTACCCCAGGAACA-GCGGCGGGAGGTCCAGGGAACGCGGGGTCATTGA 905
Query 735 CGACCAACGTAAattttggggtcaattttgtaattttggttttgttggctactattttta 794
||| ||||||||||||||||||||||| | ||||||||||||||||| | |||||||||
Sbjct 906 CGAGGAACGTAAATTTTGGGGTCAATTTGGGAATTTTGGTTTTGTTGGGTTCTATTTTTA 965
Query 795 ttttCTGAATGTA-Atctctctctctcatctctcttcacttcttgagtctctctctctat 853
||||||||||| |||||||||| ||||||||| |||||||||||||||||| | |
Sbjct 966 TTTTCTGAATGGGGATCTCTCTCTAG--TCTCTCTTCTCTTCTTGAGTCTCTCTCTATTT 1023
Query 854 ttctttttttttG-TTCGAAC-AATAATAATGGAGCCCCATACTTTT-TACTGTTTTAGT 910
|| |||||||||| || | | || |||||||| ||||||||||||| ||||||||||||
Sbjct 1024 TTTTTTTTTTTTGGTTTGTTCGAACAATAATGGTGCCCCATACTTTTGTACTGTTTTAGT 1083
Query 911 CTTAGGGCCATTTACTTCGTTTCACCACATTATTTAGAGTTATTGGATTGTAT 963
||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1084 CTTAGGGCCATTTACTTTGTTTCACCACATTACTTAGAGTTATTGGATTGTAT 1136
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47119629886
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5