BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478060
Length=3338
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07400.1 | Symbols: | lipase class 3 family protein | chr3:... 5275 0.0
AT3G07410.1 | Symbols: AtRABA5b, RABA5b | RAB GTPase homolog A5... 185 2e-45
> AT3G07400.1 | Symbols: | lipase class 3 family protein | chr3:2367302-2372445
FORWARD LENGTH=3373
Length=3373
Score = 5275 bits (2856), Expect = 0.0
Identities = 3111/3234 (96%), Gaps = 18/3234 (1%)
Strand=Plus/Plus
Query 113 TAGTAATGGAGTCGATACAGAGCCGAGTGGAATCGTGGATCAGAGACCAGAGGGCGAGGT 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 150 TAGTAATGGAGTCGATACAGAGCCGAGTGGAATCGTGGATCAGAGACCAGAGGGCAAGGT 209
Query 173 TCTTACGGGTTTCGTGGGGACCGATTCAATGGAGGTTCCGGTGGCCTCCATGGAACGGAG 232
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 210 TCTTACGGGTTTCGTGGGGACCGATTCAATGGAGGTTCCGGTGGCCACCATGGAACGGAG 269
Query 233 GAGATGCCGATCAGAGGATTAAGATCCGTCGGGAATATGAGAAGCGCAAAAAGCAAATCG 292
||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 270 GAGATGCGGATCAAAGGATTAAGATCCGTCGGGAATACGAGAAGCGCAAAAAGCAAATTG 329
Query 293 AGGATCTCTGTCTGGCCCTTAAATCCGAGTCTGTCGAAGATTTACAAGACATACTCTGTT 352
||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 330 AGGATCTCTGTCTCGCACTTAAATCAGAGTCTGTCGAAGATTTACAAGACATACTCTGTT 389
Query 353 GCATGGTACTCTCCGAGTGTGTTTACAAGAGACCTGCAAGTGAGATGGTTCGAGCTGTTA 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 390 GCATGGTACTCTCCGAGTGTGTTTACAAGAGACCTGCAAGTGAGATGGTTCGAGCTGTTA 449
Query 413 ACAAATTTAAAGCCGACTTCGGTGGCCAATTTATTTCGTTGGAGAGAGTTCAACCTTCAT 472
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 450 ACAAATTTAAAGCGGACTTCGGTGGCCAATTTATTTCGTTGGAGAGAGTTCAACCTTCAT 509
Query 473 CTGATCACGTACCTCACAGGTATCTACTTGCTGAGGCAGGTGATACATTATTTGCATCCT 532
| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 510 CAGATCACGTTCCTCACAGGTATCTACTTGCTGAGGCAGGTGATACATTGTTTGCATCCT 569
Query 533 TTGTCGGAACTAGGCAATATAAGGACATCATGGCCGATGCAAATATACTTCAAGGTCACA 592
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 570 TTGTTGGAACTAGGCAATATAAGGACATCATGGCCGATGCAAATATACTTCAAGGACACA 629
Query 593 TTTTTCACGATGATGTCGCAGAGGATGAATGTATCGCAGCATCTGAACCTATTCAAAGTG 652
| |||||||||||||||||||||||||||||||||| ||||||||| ||||| || ||||
Sbjct 630 TATTTCACGATGATGTCGCAGAGGATGAATGTATCGAAGCATCTGAGCCTATACAGAGTG 689
Query 653 AACCACTTAAGAAAAATGGAGAGGGTTTGCGGAATCCTAAACAACTTAGACAGAAGCCTA 712
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 690 AACCACTTAAGAATAATGGAGAGGGTTTGCGGAATCCTAAGCAACTTAGACAGAAGCCCA 749
Query 713 AACCTGCTGCTCATCGGGGGTTCTTGGCTCGTGCTAAGGGGATACCTGCTCTGGAACTGT 772
|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
Sbjct 750 AACCTGCTGCTCATCGGGGGTTCTTGGCTCGTGCAAAGGGGATTCCTGCTCTGGAACTTT 809
Query 773 ATAGGCTTGCTCAGAAAAAGAAACGAAAACTTGTATTATGTGGACACTCACTTGGTGGAG 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 810 ATAGGCTTGCTCAGAAAAAGAAACGAAAACTTGTATTATGTGGACACTCACTTGGTGGAG 869
Query 833 CTGTAGCTGCGTTAGCTACACTCGCCATATTGAGGGTTGTTGCTGCCTCTTCAAAGAAAG 892
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 870 CTGTAGCTGCGTTGGCTACACTCGCCATATTGAGGGTTGTTGCTGCATCTTCAAAGAGAG 929
Query 893 GAAATGAAAATATTCATGTCAAATGTATAACCTTTTCCCAGCCTCCTGTTGGAAATGCTG 952
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 930 GAAATGAAAATATTCATGTCAAATGTATAACCTTTTCCCAACCTCCTGTTGGAAATGCTG 989
Query 953 CTTTGAGAGATTATGTTCATGAAAAAGGGTGGCATCATTATTTCAAAAGCTACTGTATAC 1012
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 990 CGTTGAGAGATTATGTTCATGAAAAAGGGTGGCATCATTATTTCAAAAGCTACTGCATTC 1049
Query 1013 CTGAAGATTTGGTCCCGAGGATATTATCTCCTGCATATTTTCATCATTACAATGAACAAA 1072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1050 CTGAAGATTTGGTCCCGAGGATATTATCTCCTGCATATTTTCATCATTACAATGAACAAA 1109
Query 1073 GAATGTCAATGGCTGGAGAGACTGAAGCCACAAATGGCCAGGGCGTATCATCAGAGGCAG 1132
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1110 GAATCTCAATGGCTGGAGAGACTGAAGCCACAAATGGCCAGGGCGTAACATCAGAGGCAG 1169
Query 1133 AAAAGAGAAAAAATAAGGAGCACGAGCAGTTAGTTATTGGTGTTGGCCCTGTTCAGAACT 1192
|||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1170 AAAAGAGAAAAACTAAGGAGCACGAGCAGTTGGTCATTGGTGTTGGCCCTGTTCAGAACT 1229
Query 1193 CATTCTGGAGGCTTTCAAAACTTGTCCCCCTAGAGGCTGTTAAGAAACAACTGGATAGGT 1252
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1230 CATTCTGGAGGCTTTCAAAACTTGTCCCCCTAGAGGCTGTTAAGAAACAATTGGATAGGT 1289
Query 1253 ACATAGGAAAGAAAGAGGATCCTGCAGGGACGTCTACTGTAAATGAATCCGCAGTGTCAG 1312
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||
Sbjct 1290 ACATAGGAAAGAAAGAGGATCCTGCAGAGACGTCTACTGCAAATGAATCCGCAGTGTTAG 1349
Query 1313 CTCCTATTGGGGATGTGGTTATTGAACCACAATCTCTTGAAATAGAAGAGGGTAAGGATG 1372
|||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1350 CTCCTATTAGAGACGTGGTTATTGAACCACAATCTCTTGAAATAGAAGAGGGTAAGGATG 1409
Query 1373 GTATATCTCTCAAGCCATTGCCAGATACTGGTAATGGACAAACAGTTAGTGGAAGAAGTG 1432
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 1410 GTATATCTCTCAAGCCATTGCCAGATGCTGGTAATGGACCAACAGTTAGTGGAAGAAGTG 1469
Query 1433 AAGGAAAGACCAATTCGCCTAATGGGTTCAGGGTTCCATATCTACCCTCTTACGTTCCAT 1492
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1470 GAGGAAAGACCAATTCGCCTAATGGGTTCAGGGTTCCTTATCTACCCTCTTACGTTCCAT 1529
Query 1493 TTGGAGAGCTATATCTCTTGGGAACTGCATCTGTGGAATCACTTTCAGAAGGAGAGTACT 1552
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1530 TTGGAGAGCTATATCTCTTGGGAACTGCATCTGTAGAATCACTTTCAGAAGGAGAGTACT 1589
Query 1553 CTAAATTGACATCGGTCAGATCTGTGATAACCGAACTGAGAGAACGCCTTCAGTCGCATT 1612
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1590 CTAAATTGACATCGGTCAGATCTGTGATAACCGAACTGAGAGAACGTCTTCAGTCACATT 1649
Query 1613 CTATGAAGTCCTATAGGTCTCGTTTCCAGAGAATACATGACCTCTGCATGGACGTTGATG 1672
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1650 CTATGAAGTCCTATAGGTCTCGCTTCCAGAGAATACATGACCTCTGCATGGATGTTGATG 1709
Query 1673 GtttttttGGAGTGGATCAACAGAAGCAGTTTCCACATCTACAACAGTGGCTTGGACTTG 1732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1710 GTTTTTTTGGAGTGGATCAACAGAAGCAGTTTCCACATCTACAACAGTGGCTTGGACTTG 1769
Query 1733 CTGTCGGTGGTAGTATAGAACTTGGGCACATTGTTGAATCACCGGTTATTAGAACCGCCA 1792
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1770 CTGTCGGTGGTAGCATAGAACTTGGGCACATTGTTGAATCACCGGTTATTAGAACCGCCA 1829
Query 1793 CTTCTATCGCCCCTCTTGGCTGGAAAGGCGTTCCGGGTGATAAGAATGCAGAATC-TCTA 1851
|||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1830 CTTCTATCGCTCCTCTTGGCTGGAAAGGCGTTCCGGGTGATAAGAATGCAGAA-CTTCTA 1888
Query 1852 AAAATTGATATCACTGGATTTGGCTTGCATTTGTGTTCTTTTGTACATGCACAAGTGAAT 1911
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1889 AAGGTTGATATCACTGGATTTGGCTTGCATTTGTGTTCTTTTGTACATGCACAAGTGAAT 1948
Query 1912 GGCAACTGGTGCTCAACTACCGTGGAATCCTTT-CCTACAACACCTGCTTATTCTTCTGA 1970
|||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||| ||
Sbjct 1949 GGCAACTGGTGCTCAACTACTGTGGAAT-CTTTCCCTACAACACCTGCTTATTCTTCAGA 2007
Query 1971 TAATGTAGAACAGACAGAACTACAGAAAATTAGGGTGGTCATTGGAGCTCCTCTGAAACG 2030
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2008 TAATGTAGAACAGACAGAACTACAGAAAATTAGGGTGGTCATTGGAGCTCCTCTGAAACG 2067
Query 2031 ACCTCCAAGCAATCAGATAGTTGAAGATCCTTTAGTTCCTATGTTCTCGTCTGTTGATTC 2090
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2068 ACCTCCAAGCAATCAGATAGTTGAAGATCCTTTGGTTCCTATGTTCTCGTCTGTTGATTC 2127
Query 2091 GAACACCGGTTTTCCAAAGGAAGGAATCAACCTAGGATTTTTTCAAGAGGACAAGTTTGT 2150
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2128 GAAAACCGGTTTTCCAAAGGAAGGAATCAACCTAGGATTTTTTCAAGAGGACAAGTTTGT 2187
Query 2151 TCGTCCTGAAGGTTTGGAAGACTTGTATATATTCTGCACTAGTGATTTCGCTACTGTAGC 2210
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2188 CCGTCCTGAAGGTTTGGAAGACTTGTATATATTCTGCACTAGTGATTTCGCTACTGTAGC 2247
Query 2211 TAAGGAAGTTGAGGTCAGAACACGGAGGGTGAGATTACTCGGGCTTGAGGGTGCTGGTAA 2270
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2248 TAAGGAAGTTGAGGTCAGAACACGGAGGGTGAGACTACTCGGGCTTGAGGGTGCTGGTAA 2307
Query 2271 AACCTCTCTATTCCGCTCAATACTGGGTCAAAGCATGCTGAGCTCGATGACTCATGTGGA 2330
|||||||||||||||| | |||||||| ||||||||||| || |||||||||||||||||
Sbjct 2308 AACCTCTCTATTCCGCGCTATACTGGGCCAAAGCATGCTAAGTTCGATGACTCATGTGGA 2367
Query 2331 GAATCTTCAGATACAATCCGATGTTCAAGAATGTATTATTGGTGGTGTTTGCTACTCGGA 2390
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2368 AAATCTTCAGATACAATCTGATGTTCAAGAATGTATTATTGGTGGTGTTTGCTACTCGGA 2427
Query 2391 CACGGTGGGCGTAAACCTGCAGGAGCTGCACTTAGAGGCATCTCGCTTCAGAGAAGAACT 2450
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2428 CACTGTGGGCGTAAACCTGCAGGAGCTGCACTTAGAGGCATCTCGCTTCAGAGAAGAACT 2487
Query 2451 ATGGAAAGGAGTTCGTAATCTAAGTAAAAAGATTGATTTAATTATTCTTGTGCACAATCT 2510
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2488 ATGGAAAGGAGTTCGTAATCTAAGTAAAAAGATAGATTTAATTATTCTTGTGCACAATCT 2547
Query 2511 CTCTCACAGAATACCACGTTACCAAAACTCTACAACGCAACTGCAGCAACAGCAACCTGC 2570
|||||||||||||||||||||||||||||| ||||| | |||||||||||||||||| ||
Sbjct 2548 CTCTCACAGAATACCACGTTACCAAAACTCAACAACACTACTGCAGCAACAGCAACCAGC 2607
Query 2571 ACTTGCTCTTCTGTTAGACGAGGTTAAATCTCTCGGTATCCCTTGGGTCCTCGCCATAAC 2630
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 2608 ACTTGCTCTTCTGTTAGATGAGGTTAAATCTCTTGGTATCCCTTGGGTCCTCGCCATAAC 2667
Query 2631 AAACAAGTTCTCAGTCAGTGCCCATCAGCAGAAATCCGCTATCGAAGCTGTACTTCAGGC 2690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2668 AAACAAGTTCTCAGTCAGTGCCCATCAGCAGAAATCCGCTATCGAAGCTGTACTTCAGGC 2727
Query 2691 ATACCAAGCGTCTCCAAACACAACCGGAATTGTCAACTCTATCCCTTATATTATTTCTGG 2750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2728 ATACCAAGCGTCTCCAAACACAACCGGAATTGTCAACTCTATCCCTTATATTATTTCTGG 2787
Query 2751 CTCTGGAACTTCCTCATTGCCTTGGGCAGCTGTGAATGCAGGTAATGATGGATCAGTAGG 2810
||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 2788 CTCTGGAACTTCCTCATTGCCTTGGGCAGCTGTGAATGCGGGAAATGACGGATCAGTAGG 2847
Query 2811 CGCGCAGAAGATGATATTCGCTCCACTCGACCTAGTCAAAAAGCCTTTTCAGAGAAAAGA 2870
|| | ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 2848 CGTACCGAAGATGATATTCGCTCCACTCGACCTTGTCAAAAAGCCGTTTCAGAGAAAAGA 2907
Query 2871 CACTGTTTTTCCAGTGGATGGTGTGAATTCCCTTTGCCAGCTTGTCCATCGTGTCCTTCA 2930
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 2908 CACTGTTTTTCCAGTGGATGGTGTGAATTCTCTTTGCGAGCTTGTCCATCGTGTCCTTCA 2967
Query 2931 AACTCAAGAAGAAGCTTGCTTTCAGGAACTTGCTAGAGACAGACTGCTGGTGGAACTAGC 2990
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2968 AACTCAAGAAGAAGCTTGCTTTGAGGAACTTGCTAGAGACAGACTGCTGGTGGAACTAGC 3027
Query 2991 CAAAGACCGTG-CTGTAGATGGTTCACAGGGCAAGTCATCGTCAATGTCAGCAGCATCTG 3049
||||||||||| | |||||||||||||||| ||||||||| ||||||||||||||| |||
Sbjct 3028 CAAAGACCGTGTC-GTAGATGGTTCACAGGCCAAGTCATCATCAATGTCAGCAGCAGCTG 3086
Query 3050 TGGGCGCTTCACTTGGAGCTGGTCTTGGCCTTGTCTTGGCAGTAGTAATGGGTGCTGGTT 3109
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3087 TAGGTGCTTCACTTGGAGCTGGTCTTGGCCTTGTCTTGGCAGTAGTAATGGGTGCTGGTT 3146
Query 3110 CCGCTTTACGAAAACCCTGATTGTACCCAATCAACCGTTGCACCTGTTAATGTTATATAT 3169
|||||||||||||||||||||||||| ||||||| || || |||||||||||||||||
Sbjct 3147 CCGCTTTACGAAAACCCTGATTGTACTTGATCAACCATTCCATCTGTTAATGTTATATAT 3206
Query 3170 TTTTATATGTACATAACTCCCACTAAAGTTCAAATTCATGTTTTCGCCATTTTCTCGATT 3229
|||| ||||||||||||||||||||||||||| | ||||||||||||||||| |||
Sbjct 3207 TTTTCTATGTACATAACTCCCACTAAAGTTCA--T----GTTTTCGCCATTTTCTCTATT 3260
Query 3230 CGGTCAGGTCATTTT-GTTTAATCCCTCGGCCAGAACCAATGTGTAGTATCAACG-CAAA 3287
||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 3261 CGGTCAGGTCATTTTTGTTTAATCCCTCGGCCAGAACCAATGTGTAGTATCAA-GACAAA 3319
Query 3288 ACAGATAGCAAGTATCTTAT-A-A-GTCCGACTTCATAAATGATAATTATAACC 3338
|||||| ||||||||||||| | | ||| |||||||||||||||||||||||||
Sbjct 3320 ACAGATTGCAAGTATCTTATTATAAGTCTGACTTCATAAATGATAATTATAACC 3373
Score = 156 bits (84), Expect = 2e-36
Identities = 104/114 (91%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 1 CGCTTCCTTAATTCTATCATCTTCTCAAATCTCACCCAGAATATTCCCATTTTCAAATTT 60
||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1 CGCTTCCTTAATTTTATCATCTTCTCAAATCTCACCCTGAGTATTCCCATTTTCAAATTT 60
Query 61 CGACGCGGTTTCAAAACTCAAAACTCAAATGCTCGAAGGTAATTGCGGTCTTTA 114
|||||||||||||| ||||||||||||| |||| || ||||| |||||||||
Sbjct 61 CGACGCGGTTTCAATACTCAAAACTCAAGCGCTCCAAACTAATTCCGGTCTTTA 114
> AT3G07410.1 | Symbols: AtRABA5b, RABA5b | RAB GTPase homolog
A5B | chr3:2372317-2373556 REVERSE LENGTH=896
Length=896
Score = 185 bits (100), Expect = 2e-45
Identities = 121/130 (93%), Gaps = 6/130 (5%)
Strand=Plus/Minus
Query 3214 CGCCATTTTCTCGATTCGGTCAGGTCA-TTTTGTTTAATCCCTCGGCCAGAACCAATGTG 3272
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 896 CGCCATTTTCTCTATTCGGTCAGGTCATTTTTGTTTAATCCCTCGGCCAGAACCAATGTG 837
Query 3273 TAGTATCAACG-CAAAACAGATAGCAAGTATCTTAT-A-A-GTCCGACTTCATAAATGAT 3328
||||||||| | |||||||||| ||||||||||||| | | ||| |||||||||||||||
Sbjct 836 TAGTATCAA-GACAAAACAGATTGCAAGTATCTTATTATAAGTCTGACTTCATAAATGAT 778
Query 3329 AATTATAACC 3338
||||||||||
Sbjct 777 AATTATAACC 768
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 166102748273
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5