BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478062
Length=2139
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07420.1 | Symbols: NS2, ATNS2, SYNC2_ARATH, SYNC2 | asparag... 3193 0.0
> AT3G07420.1 | Symbols: NS2, ATNS2, SYNC2_ARATH, SYNC2 | asparaginyl-tRNA
synthetase 2 | chr3:2373977-2376744 REVERSE LENGTH=2219
Length=2219
Score = 3193 bits (1729), Expect = 0.0
Identities = 1981/2102 (94%), Gaps = 20/2102 (1%)
Strand=Plus/Plus
Query 1 CCAACTCAAGGAACCTCACTAAACTCAAATCTTCCTCTCAATATCTTCCATTCTTCTTCC 60
|||||||||||||||||||||||||||||||||||||||| | ||| ||| |||||||||
Sbjct 1 CCAACTCAAGGAACCTCACTAAACTCAAATCTTCCTCTCAGTTTCTCCCACTCTTCTTCC 60
Query 61 TCAACCTTCCGATTTATCGGATTATTCTAAAATACCCAAAATGGAATCCCATGGAAAAAC 120
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 61 TCAACCTTCCGATTTATCGGATTACTCTAAAATACCCAAAATGGAATCTCATGGAAAAAC 120
Query 121 CCATCAGAAAGAGCAGGATGGTGATCTCTCTCCGAAACCCATAACGTTGTCAAAGTATTC 180
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCATCAGAAAGAGCACGATAATGATCTCTCTCCGAAACCCATAACGTTGTCAAAGTATTC 180
Query 181 GAACCGGGTCGAGTTAAAGACTCTGCTTGATCGGAGCGACCGTGGCGCAGCATTGGCCGG 240
||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||
Sbjct 181 GAAACGGGTCGAGTTAAAGACTCTGCTTGATCGGAGCGACCGCGGCGCAGGATTGGCTGG 240
Query 241 GAAAAGGGTTGTGATTGGTGGTTGGGTTAAGTCTGCTAGAGCGGTTAAGAAAGATTCTCC 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 241 GAAAAGGGTTGTGATTGGTGGTTGGGTTAAGTCTGCTAGAGCGGTTAAGAAAAATTCTCC 300
Query 301 TCCTCCTCCGCCGCCTGTAGTTGCCGTCCCTTCGCCGTCCAGTGGTGGGGATCAAGCTCA 360
||||||||| | |||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 301 TCCTCCTCCTCTGCCTGTAGTTGCCGCCCCTTCGCCGTCGAGTGGTGGGGATCAAGCTCA 360
Query 361 TACCACGGCGAACATTAGGTGCACCGAAATAATTCAATCGAAAATGAATATTTTCAGGAG 420
||| ||||| |||||||||||||| || ||||| |||||||||||||||||||||| |||
Sbjct 361 TACGACGGCCAACATTAGGTGCACGGAGATAATCCAATCGAAAATGAATATTTTCAAGAG 420
Query 421 ATTTTTCGATGTGTTGAGCGGCGGTGGGAAGACTTATCCAATCTTTGATAAGACGGAACT 480
|||||||||||| ||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct 421 ATTTTTCGATGTACTGAGCGGTGGTGGTAAGACTTATCCAATCTTTGATAAGACAGAACT 480
Query 481 CGCCGGTCAGAAGGCC-TCGCCACCACCGGAGTATGTTTTTTACTTCTTGATCAGTGATG 539
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CGCCGGTCAGAAGGCCGT-GCCACCACCGGAGTATGTTTTTTACTTCTTGATCAGTGATG 539
Query 540 GATCCTCCATCTCCAGTCTCCAAGTTGTTGTTGATTCTGCGTTGTCAACTGTTCCAGCAA 599
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 540 GCTCCTCCATCTCCAGTCTCCAGGTTGTTGTTGATTCTGCGTTGTCAACTGTTCCAGCAA 599
Query 600 CTCAGATTATGGCTCTAGGGACCTGTATTGTAGCTGAAGGTGTGTTAAGACTGCCATTGG 659
||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 600 CTCAGCTTATGGCTCTAGGGACTTGTATTGTAGCTGAAGGTGTGTTAAGACTACCATTGG 659
Query 660 CTGCTTCTGCAAAACATGTAATTGAGCTTGAGGCTGAGAAGCTTCTTCATGTTGGAACAG 719
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 660 CTGCTTCTGCAAAACATGTAATTGAGCTTGAGGCAGAGAAGCTTCTTCATGTTGGAACAG 719
Query 720 TGGATCCAGAGAAGTATCCACTCTCGAAGAAACAGCTTCCTCTGCATATGCTTAGAGACT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TGGATCCAGAGAAGTATCCACTCTCGAAGAAACAGCTTCCTCTGCATATGCTTAGAGACT 779
Query 780 TCTCTCATTTCAGACCCCGCACAACTACGGTTGGGTCGGTGACTCGAGTCCACAGTGCGC 839
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TCTCTCATTTCCGTCCCCGCACAACTACGGTTGGGTCGGTGACTCGAGTCCACAGTGCGC 839
Query 840 TAACCTTAGCAAGCCACACATTCCTTCAGTACCATGGCTTTCAGTATGTTCAAGTACCAG 899
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 840 TAACCTTAGCAAGCCACACATTCCTTCAATACCATGGGTTTCAGTATGTTCAAGTACCAG 899
Query 900 TCATCACAACAACCACTGGATTTGGCGAAATGTTTAGGGTCACTACACTTGTAGGTAAAA 959
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 900 TCATCACAACAACCACTGGATTTGGCGAAATGTTTAGGGTCACTACTCTTTTAGGTAAAA 959
Query 960 CTGATGATAAAGAGGAGAAGAAGCCT---GTC-AATGAAAAAGATGGATTTAGCATTGAC 1015
|||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||
Sbjct 960 CTGATGATAAAGAGGAGAAGAAGCCTCCTGTCCAA-GAAAAAGATGGATTTAGCATTGAC 1018
Query 1016 ACCGTAAAGGCTGCGATAAAGGAAAAGACTAGGCTTATTGATCACCTCAAGAGATCTGAC 1075
||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1019 ACCGTAAAGGCTGTGATAAAGGAAAAGACGAGGCTTATTGATCACCTCAAGAGATCCGAC 1078
Query 1076 AGCAACCGAGAAGCTGTTGTTGCTGCGGTACACGACTTGAAGAAAACGAGCGATCTTGCA 1135
|||||||||||| | || |||||||| |||||||||||||||||||||| ||||||||||
Sbjct 1079 AGCAACCGAGAAACCGTGGTTGCTGCTGTACACGACTTGAAGAAAACGAACGATCTTGCA 1138
Query 1136 TCTCAGCTTGAGATGAAACAAAAATCCAAAACAGGAACTTTGGTTAAATCTGAAAAGCTT 1195
|| ||| ||||||||||||||||||||||||||||||||||||| ||| |||| ||||||
Sbjct 1139 TCGCAGATTGAGATGAAACAAAAATCCAAAACAGGAACTTTGGTCAAACCTGAGAAGCTT 1198
Query 1196 GATTTCTCAAAAGATTTCTTTGGTCGCGACGCTTATCTGACTTCTTCTGGGAGGTTTCAT 1255
|||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1199 GATTTCTCGAAAGATTTCTTTGGTCGCGACACTTATCTGACTGCTTCTGGGAGGTTTCAT 1258
Query 1256 CTTGAGAGCTATGCCTCTGCACTTGGAAAAGTGTATACCTTTGGACCAAGATTCATAGCT 1315
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1259 CTTGAGAGCTATGCTTCTGCACTTGGAAAAGTTTATACCTTTGGACCAAGATTCATAGCT 1318
Query 1316 GATAAAATCGACAATGCAAGGCATTTGGCAGAGATGTGGAGTGTGGAAACTGAGATGGCT 1375
|||||||| ||||||||||||||||||||||||| ||||| ||||||||| || ||||||
Sbjct 1319 GATAAAATTGACAATGCAAGGCATTTGGCAGAGAAGTGGAATGTGGAAACCGAAATGGCT 1378
Query 1376 TTCTCGGAATTGGATGATGCTATGGATTGTGCTGATGAATACTTCAAGTTCCTCTGCAAA 1435
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 TTCGCGGAATTGGATGATGCTATGGATTGTGCTGATGAATACTTCAAGTTCCTCTGCAAA 1438
Query 1436 TATGTTCTGGAGAATCGCGATGAAGACATGAAATTCATATCAAAACGAGTTGACAAGACC 1495
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 TATGTTCTGGAAAATCGCGATGAAGACATGAAATTCATATCAAAACGAGTTGACAAGACC 1498
Query 1496 ATCACCACACGTCTCGAAGCAACAGCATCCAGCTCTCTTTTGAGATTCTCCTATACCGAT 1555
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1499 ATCACCACACGTCTCGAAGCAACAGCATCCAGCTCCCTTTTGAGATTCTCCTATACCGAA 1558
Query 1556 GTGATTAGTCTTCTTCAAAAGGCAACCACTACAAAATTTGAAACCAAGCCTGAGTGGGGA 1615
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 GTGATTAGTCTTCTGCAAAAGGCAACCACTACAAAATTTGAAACCAAGCCTGAGTGGGGA 1618
Query 1616 GTTGCTTTAACAACAGAGCATCTAAGTTATCTAACTGATGAGATCTACAAGGGTCCTGTA 1675
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1619 GTTGCTTTAACAACAGAGCATCTAAGTTATCTGACTGATGAGATCTACAAAGGTCCTGTA 1678
Query 1676 ATCATACATAGCTACCCGAAAGCAGTTAAACAGTTTTACGTACGGTTGAATGATGATAAG 1735
|| |||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1679 ATTGTACATACCTACCCGAAAGCAATTAAACAGTTTTACGTAAGGTTGAATGATGATAAG 1738
Query 1736 AAGACGGTAGCAGCATTTGATCTGGTCGTACCAAAGGTTGGTGTTGTAATCACCGGGAGC 1795
||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1739 AAGACTGTAGCAGCGTTTGATCTGGTCGTACCAAAGGTTGGTGTTGTGATCACCGGGAGC 1798
Query 1796 CAAAATGAAGAACGGTTTGAGATTTTAAATGCGAGGATCGCGGAATTTGGATT-ATCGAG 1854
||||| |||||||||||||||||| | |||||||||||| ||||| ||||| | ||||
Sbjct 1799 CAAAACGAAGAACGGTTTGAGATTCTGGATGCGAGGATCGGGGAATCCGGATTCA-CGAG 1857
Query 1855 GGAGAAGTTTGAGTGGTACCTAGATTTAAGGAGGCATGGGACAGTGAAACATTCCGGAAT 1914
||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 1858 GGAGAAGTTCGAGTGGTACTTAGATTTAAGGAGGCATGGGACAGTGAAACATTCAGGAAT 1917
Query 1915 AAGCCTAAGCATGGAACAAATGCTTCTGTTTGCAACCGGACTTCCTGATATCAAAGACGC 1974
||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||| ||
Sbjct 1918 AAGCCTAAGCATGGAACAAATGCTTCTGTATGCGACCGGGCTTCCTGATATCAAAGATGC 1977
Query 1975 CATTCCATTCCCAAGAAGTTGGGGCAAAGCTAATAATTAAAGGCTTAAAGCAGCCTCAAG 2034
|||||| ||||||||||||||||||||||| || | || ||||||||||||||||
Sbjct 1978 CATTCCTTTCCCAAGAAGTTGGGGCAAAGC-AA-AC--AA----TTAAAGCAGCCTCAAG 2029
Query 2035 CT-TTTATGTACAAACTCTCA-GTTACATTGTTATGTATCCAATGTAACCATACTTGTGT 2092
|| |||||||||||||| | | ||||||||||| ||||| | |||||||||||||| ||
Sbjct 2030 CTATTTATGTACAAACT-TGAAGTTACATTGTTGTGTATTCTCTGTAACCATACTTGGGT 2088
Query 2093 GT 2094
||
Sbjct 2089 GT 2090
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106073751585
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5