BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478063
Length=855
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07430.1 | Symbols: emb1990, YLMG1-1, ATYLMG1-1 | YGGT famil... 1051 0.0
> AT3G07430.1 | Symbols: emb1990, YLMG1-1, ATYLMG1-1 | YGGT family
protein | chr3:2379193-2380198 FORWARD LENGTH=1006
Length=1006
Score = 1051 bits (569), Expect = 0.0
Identities = 708/772 (92%), Gaps = 22/772 (3%)
Strand=Plus/Plus
Query 1 ATATCTAAAAGACTC-AAAACCTATCGTCA-TTATCTTCAACAGGCGGAGGAACGGAGAT 58
|||||| |||||||| |||||||||||||| |||||||||||||||||| |||||||||
Sbjct 1 ATATCTGAAAGACTCAAAAACCTATCGTCATTTATCTTCAACAGGCGGAATAACGGAGAT 60
Query 59 GGCCGCCATTACAGCACTCGCTCTCCGCTCTCCTGTTTTTCTTCCTCCATCATCCGCCAC 118
||||||||||||||| ||| |||||||||||||||||| || | | |||||||| |||||
Sbjct 61 GGCCGCCATTACAGCTCTCACTCTCCGCTCTCCTGTTTATC-T-C-CCATCATCTGCCAC 117
Query 119 AACCCCTAGATTCCATGGCTTCA-C---CAA--GCTACCAGCTCGTCTCTTCTTTCCTCT 172
|| |||||||||||||||||||| | ||| | ||||||||||||||||||||||||
Sbjct 118 AAGCCCTAGATTCCATGGCTTCACCAATCAACCACCACCAGCTCGTCTCTTCTTTCCTCT 177
Query 173 TAAACCCTTCCCTTCCCTATCCATCCAAAACCCTAAATCTAAATCCATCCGAATTTCCGC 232
||| ||||||||||| ||||| |||||||| || ||||||||||||||||||||||
Sbjct 178 TAACCCCTTCCCTTCTCTATCAATCCAAAA-CC-----CTAAATCCATCCGAATTTCCGC 231
Query 233 ATCCGCATCGCCGAT---GACACCAA-CCATCCCGACGGAGAAATCAACAACTCGACCAT 288
|||||| |||||||| ||||||| || ||| ||||||||| |||||| |||| |||
Sbjct 232 ATCCGCTTCGCCGATAACAACACCAATCC-TCCAGACGGAGAAGTCAACAGCTCGGTCAT 290
Query 289 CGACACTCACCGGGTCGACTCGGTCTCTCGCTACTCTCGCGGCTTTAACAATCGCTGTAA 348
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 291 CGACACTCACCGGGTCCACTCGGTCTCTCGCTACTCTCGCGGCTTTAGCAATCGCTGTAA 350
Query 349 CCAGAGTCTTAGCTCAGAAACTCTCTCTTGCGATCCAGATTTCAAGTCCCGCAATCGCAG 408
|||||||| ||||||||||||||||||| || ||||||| ||||||||||| |||||| |
Sbjct 351 CCAGAGTCCTAGCTCAGAAACTCTCTCTCGCAATCCAGACTTCAAGTCCCGTAATCGCCG 410
Query 409 ACGGATTACGATTCTCTCTCAGTACCGCCGGACCGGTCTTCTTCGCGTCGCTCCGGGATC 468
|||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 411 ACGGGTTACGATTCTCTCTCAGTACCGCCGGACCTGTCTTCTTCGCGTCTCTCCGGGATC 470
Query 469 GTCCTCCGGGATACTTGAACACGCCGCTTACGGTGGTTGCGGTGGGGATAAAGAAGTGGT 528
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 471 GTCCTCCGGGATACTTGAACACGCCGCTGACGGTTGTTGCGGTGGGGATAAAGAAGTGGC 530
Query 529 TAGACATATACAGTGGGGTTTTGATGGTTAGGGTTTTGCTCAGTTGGTTCCCTAATATCC 588
||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 531 TAGACATTTACAGTGGGGTATTGATGGTTAGGGTTTTGCTGAGTTGGTTCCCTAATATCC 590
Query 589 CTTGGGAAAGACAGCCTTTGTCTGCCATTAGAGATCTATGTGATCCTTACTTGAATCTCT 648
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 591 CTTGGGAAAGACAGCCTTTGTCTGCCATTAGAGATCTCTGTGATCCTTACTTGAATCTCT 650
Query 649 TCAGAAACATCATTCCTCCTATCTTCGATACTCTTGATGTTAGTCCATTGCTTGCTTTCG 708
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 651 TCAGAAACATCATTCCTCCTATCTTCGATACGCTTGATGTTAGTCCATTGCTTGCTTTCG 710
Query 709 CGGTTCTTGGTACACTTGGATCTATTGTTCATGGCAGCACCGGATAGAAATT 760
|||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct 711 CGGTTCTTGGTACACTTGGATCGATTGTTCATGGCAGCACTGGGTAGAAATT 762
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41694342010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5